mRNA_E-siliculosus-1a_F_contig10650.463.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE) HSP 1 Score: 236 bits (603), Expect = 5.410e-64 Identity = 121/165 (73.33%), Postives = 131/165 (79.39%), Query Frame = 2 Query: 665 IENETARGSVGG--HILKD---KALQVSTVCGFCGEVGCRSTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLGSAKAGSDTSPCTNMVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALP 1144
+ N +RG V G H+ D K VSTVCGFCG VGCRSTIHDPPG+ARPLVHSTCPSAPRSDARQEAVALNL SA+A SDTSPCTNMVLKC CSQD YIW YGM +HVTRCH+ ++LVA GT D+FKEA TISESEKAKVL K KAGRPRRR QGN P
Sbjct: 1062 VGNTDSRGIVVGDCHVGGDPGNKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGTGADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLPP 1226
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI) HSP 1 Score: 212 bits (539), Expect = 3.200e-62 Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 2 Query: 917 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMAGTRSLEDMGEE 1231
MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNM+GTRSLEDMGEE
Sbjct: 1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTRSLEDMGEE 105
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE) HSP 1 Score: 207 bits (526), Expect = 2.260e-56 Identity = 102/129 (79.07%), Postives = 108/129 (83.72%), Query Frame = 2 Query: 695 GGHILKDKALQVSTVCGFCGEVGCRSTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLGSAKAGSDTSPCTNMVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAK 1081
GGHILKDK VST CGFCG VG +TIHDPPGKARPLVHSTCPSAPRSDARQEAVALNL SA+AGSDTS CTNMV KC FCSQ YIWKY MS+H+TRCH+ D+LVA GT D FKE TISESEKAK
Sbjct: 403 GGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGTGADNFKETCTISESEKAK 528
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE) HSP 1 Score: 174 bits (440), Expect = 7.530e-48 Identity = 85/106 (80.19%), Postives = 93/106 (87.74%), Query Frame = 2 Query: 917 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMAGTRSLEDMGEEE 1234
MVLKC CSQ+ YIWKYGMSEHVTR H+ED+ VAAGT VD+FKEAY+ISESEKAK L KFKAG+PR+RGQGNE LP GALG TEGNG GRNMAGTRSLEDMGEE+
Sbjct: 1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGTGVDKFKEAYSISESEKAKALHKFKAGKPRQRGQGNEVLPPGALGRTEGNGASGRNMAGTRSLEDMGEED 106
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match: A0A6H5J9C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C9_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 1.040e-7 Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 2 Query: 1100 AGRPRRRGQGNEALPTGALGSTEGNG-TFGRNMAGTRSLEDMGEEE 1234
AG+P RRGQGNE +P G LGS E NG GR M GTRSLEDMGEEE
Sbjct: 10 AGKPLRRGQGNEVVPPGTLGSAERNGGASGRKMVGTRSLEDMGEEE 55
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Match: A0A371DN83_9APHY (PHD domain-containing protein n=1 Tax=Polyporus brumalis TaxID=139420 RepID=A0A371DN83_9APHY) HSP 1 Score: 57.4 bits (137), Expect = 7.140e-5 Identity = 40/143 (27.97%), Postives = 68/143 (47.55%), Query Frame = 2 Query: 692 VGGHILKDKAL-QVSTVCGFCGEVGCRSTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLGSAKAGSDTSPCTNMVLKCLFCSQDT-YIWKYGMSEHVTRCHREDILVAAGTTVDRFKEAYTISESEKAKVLQKFKAGRPR 1114
+G HIL D + + ST CGFC ++ G+ + R A+ L++ + SPCTN+ ++C C +D +WKY +S H+ R HR+D V+ F + +S +E A+ ++K + +PR
Sbjct: 1424 IGAHILFDSRIDRSSTPCGFCLSTADTCAVYLKRGQGARRGERLDYNKSRCPAKYT---LSITRTSQPAARSPCTNVPMRCSLCPKDAPAVWKYNLSSHLLRAHRQD------PEVEPFASLWRLSPTEVAR-MEKLYSAKPR 1556 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10650.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10650.463.1 >prot_E-siliculosus-1a_F_contig10650.463.1 ID=prot_E-siliculosus-1a_F_contig10650.463.1|Name=mRNA_E-siliculosus-1a_F_contig10650.463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=224bp MLVATPGRSPAQYALGLFSCTKAPSEEQAQDGAVVKGRLMKLQWSSVAPAback to top mRNA from alignment at E-siliculosus-1a_F_contig10650:163..2035+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10650.463.1 ID=mRNA_E-siliculosus-1a_F_contig10650.463.1|Name=mRNA_E-siliculosus-1a_F_contig10650.463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1873bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10650:163..2035+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10650:163..2035+ >mRNA_E-siliculosus-1a_F_contig10650.463.1 ID=mRNA_E-siliculosus-1a_F_contig10650.463.1|Name=mRNA_E-siliculosus-1a_F_contig10650.463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10650:163..2035+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |