mRNA_E-siliculosus-1a_F_contig10647.459.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10647.459.1 vs. uniprot
Match: D7FSV5_ECTSI (Fatty acid desaturase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSV5_ECTSI) HSP 1 Score: 253 bits (647), Expect = 1.180e-80 Identity = 124/136 (91.18%), Postives = 128/136 (94.12%), Query Frame = 1 Query: 1 LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYAAEDDSSYVETQFRTTRDAITDGPVAEYVWGGMQYQLEHHLFPTIPRYKYRHLVPLVRKFAEENGIEYRATPQWEIIKDNIALVSPLVHTPFCLG 408 LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYAAEDDSSYVETQFRTTRDAITDGPVAEYVWGGMQYQLEHHLFPTIPRYKYR LVPLVRKFAEENGIEYRATPQWEIIKDN+AL+ + +P G Sbjct: 314 LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYAAEDDSSYVETQFRTTRDAITDGPVAEYVWGGMQYQLEHHLFPTIPRYKYRQLVPLVRKFAEENGIEYRATPQWEIIKDNLALLKRVGSSPVMPG 449
BLAST of mRNA_E-siliculosus-1a_F_contig10647.459.1 vs. uniprot
Match: A0A6H5JY43_9PHAE (FA_desaturase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY43_9PHAE) HSP 1 Score: 195 bits (496), Expect = 1.660e-59 Identity = 94/145 (64.83%), Postives = 114/145 (78.62%), Query Frame = 1 Query: 1 LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYAAED-------------DSSYVETQFRTTRDAITDGPVAEYVWGGMQYQLEHHLFPTIPRYKYRHLVPLVRKFAEENGIEYRATPQWEIIKDNIALVSPLVHTP 396 LALHYC L ALVPLPVAIGH+F+GGWLTA +VTVTHTAEE++ +D D+S+VETQF+TTRDA+ P++E++WGGMQYQLEHHLFPTIPRYKY LVPLV+KFAEENG+EYR+T WEII+DNI + + P Sbjct: 166 LALHYCWLLALVPLPVAIGHVFVGGWLTAIIVTVTHTAEEFSVKDEPAHPSSPFEEEGDASFVETQFKTTRDAVCGDPLSEHLWGGMQYQLEHHLFPTIPRYKYPDLVPLVKKFAEENGLEYRSTGSWEIIRDNIKQLKRVGEAP 310
BLAST of mRNA_E-siliculosus-1a_F_contig10647.459.1 vs. uniprot
Match: D7G2Y4_ECTSI (Fatty acid desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y4_ECTSI) HSP 1 Score: 197 bits (501), Expect = 3.290e-59 Identity = 94/145 (64.83%), Postives = 115/145 (79.31%), Query Frame = 1 Query: 1 LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYAAED-------------DSSYVETQFRTTRDAITDGPVAEYVWGGMQYQLEHHLFPTIPRYKYRHLVPLVRKFAEENGIEYRATPQWEIIKDNIALVSPLVHTP 396 LALHYC L ALVPLPVAIGH+F+GGWLTAT+VTVTHTAEE++ +D D+S+VETQF+TTRDA+ P +E++WGGMQYQLEHHLFPT+PRYKYR LVPLV+KFAEENG+EY++T WEII+DNI + + P Sbjct: 259 LALHYCWLLALVPLPVAIGHVFVGGWLTATIVTVTHTAEEFSVKDEPAHPSSPFEEEGDASFVETQFKTTRDAVCGDPFSEHLWGGMQYQLEHHLFPTLPRYKYRDLVPLVQKFAEENGLEYKSTGSWEIIRDNIMQLKRVGEAP 403
BLAST of mRNA_E-siliculosus-1a_F_contig10647.459.1 vs. uniprot
Match: A0A836CAU7_9STRA (Fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU7_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.770e-48 Identity = 82/132 (62.12%), Postives = 101/132 (76.52%), Query Frame = 1 Query: 1 LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYAAEDDSSYVETQFRTTRDAITDGPVAEYVWGGMQYQLEHHLFPTIPRYKYRHLVPLVRKFAEENGIEYRATPQWEIIKDNIALVSPLVHTP 396 L+LHY L ALV VA+GHI LGG LTAT+VTVTHTAEE +D+ S+VE QFRTTRDA P++EYVWGGMQYQLEHHLFPT+PRYKY LVP+++++A ENG+EYR T W+II DN+ + + P Sbjct: 295 LSLHYVALLALVGPGVALGHIMLGGLLTATIVTVTHTAEEMLMDDEMSFVEAQFRTTRDAKCTDPLSEYVWGGMQYQLEHHLFPTLPRYKYARLVPVIKQWAAENGLEYRVTGAWKIIADNVNQLKRVAAQP 426
BLAST of mRNA_E-siliculosus-1a_F_contig10647.459.1 vs. uniprot
Match: A0A7S4PM16_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PM16_GUITH) HSP 1 Score: 148 bits (374), Expect = 1.040e-42 Identity = 69/132 (52.27%), Postives = 95/132 (71.97%), Query Frame = 1 Query: 1 LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYAAEDDSSYVETQFRTTRDAITDGPVAEYVWGGMQYQLEHHLFPTIPRYKYRHLVPLVRKFAEENGIEYRATPQWEIIKDNIALVSPLVHTP 396 LA HY + VP +G +FL G++TA + TVTH +EE +++ +VE QFR+TRDA+ P +E++WGGMQYQLEHHLFPT+PRY+Y LVP V+KFAEENG+E+R TP++E++K N L S + P Sbjct: 26 LACHYAFMLYWVPAGTFVGALFLSGFMTAIITTVTHQSEELFFDENPEFVEGQFRSTRDAVCSNPFSEWLWGGMQYQLEHHLFPTMPRYRYPALVPHVKKFAEENGLEFRITPEFELLKMNWKLYSDIAKLP 157
BLAST of mRNA_E-siliculosus-1a_F_contig10647.459.1 vs. uniprot
Match: A0A7S0LKA8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LKA8_9EUKA) HSP 1 Score: 147 bits (371), Expect = 7.570e-41 Identity = 67/132 (50.76%), Postives = 98/132 (74.24%), Query Frame = 1 Query: 1 LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYAAEDDSSYVETQFRTTRDAITDGPVAEYVWGGMQYQLEHHLFPTIPRYKYRHLVPLVRKFAEENGIEYRATPQWEIIKDNIALVSPLVHTP 396 +AL+Y +A L+P VA+GH+FL G ++AT+VTVTH +E+ +V+ Q R+TR+A+T P++E++WGGMQYQLEHHLFPT+PRYKYR L P+VR++A E G EYR +W+I+ N+A++ + H P Sbjct: 156 IALNYLWMALLLPPAVAVGHVFLAGLISATIVTVTHQSEDLFDGLQHDWVDAQLRSTRNAVTSNPLSEWLWGGMQYQLEHHLFPTMPRYKYRALSPIVRRWAAEAGAEYREDGEWQILCRNLAMLQHVAHQP 287
BLAST of mRNA_E-siliculosus-1a_F_contig10647.459.1 vs. uniprot
Match: L1IL22_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IL22_GUITC) HSP 1 Score: 148 bits (374), Expect = 1.200e-40 Identity = 69/132 (52.27%), Postives = 95/132 (71.97%), Query Frame = 1 Query: 1 LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYAAEDDSSYVETQFRTTRDAITDGPVAEYVWGGMQYQLEHHLFPTIPRYKYRHLVPLVRKFAEENGIEYRATPQWEIIKDNIALVSPLVHTP 396 LA HY + VP +G +FL G++TA + TVTH +EE +++ +VE QFR+TRDA+ P +E++WGGMQYQLEHHLFPT+PRY+Y LVP V+KFAEENG+E+R TP++E++K N L S + P Sbjct: 246 LACHYAFMLYWVPAGTFVGALFLSGFMTAIITTVTHQSEELFFDENPEFVEGQFRSTRDAVCSNPFSEWLWGGMQYQLEHHLFPTMPRYRYPALVPHVKKFAEENGLEFRITPEFELLKMNWKLYSDIAKLP 377
BLAST of mRNA_E-siliculosus-1a_F_contig10647.459.1 vs. uniprot
Match: A0A7S3U1W3_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U1W3_9SPIT) HSP 1 Score: 138 bits (347), Expect = 5.630e-39 Identity = 68/136 (50.00%), Postives = 94/136 (69.12%), Query Frame = 1 Query: 1 LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYAAEDDSSYVETQFRTTRDAITDGPVAEYVWGGMQYQLEHHLFPTIPRYKYRHLVPLVRKFAEENGIEYRATPQWEIIKDNIALVSPLVHTPFCLG 408 LAL+Y LA L P+PVAIGHIFL G ++A +VTVTH +E+ +V QFR+TR+A T P +E++WGGMQYQLEHHLFPT+PRY+YR L P ++++A E G+EYR + E++ N ++ + H P G Sbjct: 28 LALNYLWLACL-PVPVAIGHIFLAGLISAIIVTVTHQSEDMFDGLQHDWVLAQFRSTRNARTSNPFSEWLWGGMQYQLEHHLFPTMPRYRYRRLAPRLKQWAAEQGVEYREDSEAEVLLRNFRMLRDVAHEPAVTG 162
BLAST of mRNA_E-siliculosus-1a_F_contig10647.459.1 vs. uniprot
Match: A0A6U1MJH9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MJH9_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.180e-38 Identity = 75/148 (50.68%), Postives = 96/148 (64.86%), Query Frame = 1 Query: 1 LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYA------------AEDDSSYVETQFRTTRDAITDGPVAEYVWGGMQYQLEHHLFPTIPRYKYRHLVPLVRKFAEENGIEYRATPQWEIIKDNIALVSPLVHTPFCLG 408 LA +Y L+ + G + LGG L AT+VTVTH AEEY + DD S+V+ QFRTTRDAI PV+EY+WGGMQYQLEHHLFP +PRYKY L P+V+++AE+ G++YRAT QW+II DNI + + P G Sbjct: 300 LAANYAFFLYLLGPAMFAGMVTLGGLLIATIVTVTHQAEEYLPNNDGIGLDGQESSDDPSFVDMQFRTTRDAICRDPVSEYIWGGMQYQLEHHLFPIMPRYKYSKLAPVVKEWAEKVGLDYRATDQWQIISDNINYLKKVGEAPALKG 447
BLAST of mRNA_E-siliculosus-1a_F_contig10647.459.1 vs. uniprot
Match: A0A7S4DB60_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB60_HETAK) HSP 1 Score: 137 bits (344), Expect = 4.530e-38 Identity = 65/122 (53.28%), Postives = 87/122 (71.31%), Query Frame = 1 Query: 1 LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYAAEDDSSYVETQFRTTRDAITDGPVAEYVWGGMQYQLEHHLFPTIPRYKYRHLVPLVRKFAEENGIEYRATPQWEIIKDNI 366 +A HY + AL + +GG + AT+VT TH +EEY E + S+V+ QF T+RDA+ P++EYVWGGMQYQLEHHLFPT+PRYKY LVP+V+++A E GIEYR ++EI+K NI Sbjct: 52 IAAHYAIFLALFGPGWLFAQVAIGGAMLATIVTCTHQSEEYYEEYEDSFVDNQFSTSRDAVCSNPISEYVWGGMQYQLEHHLFPTMPRYKYPALVPVVQQWAAEQGIEYRTAGEFEIVKRNI 173 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10647.459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10647.459.1 >prot_E-siliculosus-1a_F_contig10647.459.1 ID=prot_E-siliculosus-1a_F_contig10647.459.1|Name=mRNA_E-siliculosus-1a_F_contig10647.459.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=138bp LALHYCLLAALVPLPVAIGHIFLGGWLTATLVTVTHTAEEYAAEDDSSYVback to top mRNA from alignment at E-siliculosus-1a_F_contig10647:336..1322+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10647.459.1 ID=mRNA_E-siliculosus-1a_F_contig10647.459.1|Name=mRNA_E-siliculosus-1a_F_contig10647.459.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=987bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10647:336..1322+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10647:336..1322+ >mRNA_E-siliculosus-1a_F_contig10647.459.1 ID=mRNA_E-siliculosus-1a_F_contig10647.459.1|Name=mRNA_E-siliculosus-1a_F_contig10647.459.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=828bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10647:336..1322+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |