mRNA_E-siliculosus-1a_F_contig10644.458.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A6H5JHA7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA7_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 4.590e-21 Identity = 68/187 (36.36%), Postives = 71/187 (37.97%), Query Frame = 1 Query: 13 LSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHL-----------------------------------------------------------------------------------------------------------------RKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
+S+ +VVTGAGFPEWRRVRLLLSEDLGQHL RKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP
Sbjct: 167 VSLVGNEVVTGAGFPEWRRVRLLLSEDLGQHLAAAGKELLCPPTAAPREAAEAXXXXXXXVVAGVGRTRDSTTGALGKEGVGGAGXXXXXXXXEEADARRKANSNAKVVKMVETHAAGEKEERGDASGKAKTATTVRGGESRKRERKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 353
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 2.220e-20 Identity = 67/187 (35.83%), Postives = 70/187 (37.43%), Query Frame = 1 Query: 13 LSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHL-----------------------------------------------------------------------------------------------------------------RKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
+S+ +VVTGAGFPEWRRVRLLLSEDLGQHL RKVRVMHVSRPLMGGLSWAPEN GELDMITVDKYTAVLKSYP
Sbjct: 63 VSLVGNEVVTGAGFPEWRRVRLLLSEDLGQHLVAAGEKPLCPPTAAPREAAEXXXXXXXXVVAVGSRTRDSTTGALGKEDAGGAAVGDGGGETEEADARRKANSNAKVVKMVETNAAGEKEERGDASGKAKTSTTVRGKESRKRERKVRVMHVSRPLMGGLSWAPENAGELDMITVDKYTAVLKSYP 249
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A5D6Y6E5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6E5_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 9.380e-14 Identity = 36/78 (46.15%), Postives = 56/78 (71.79%), Query Frame = 1 Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + ++I VVTG GFPE R+VR+LLSE H ++V V+H+SRPL+GG++ PE+ E+D+ T + TA+L+++P
Sbjct: 68 NGKSVTIQGSHVVTGRGFPEPRKVRILLSEPREVHRQRVTVLHLSRPLVGGVA-LPEDPNEIDVATFRRVTAILRAFP 144
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A833TGC7_PHYIN (Regulator of chromosome condensation (RCC1) repeat n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TGC7_PHYIN) HSP 1 Score: 73.9 bits (180), Expect = 1.270e-13 Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1 Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +++ + TG GF + R+VR+LLSE H ++V V+H+SRPL GGL PE+ E+D+ T+ KYTA+L+S+P
Sbjct: 68 NGKQVAVLGSHIHTGKGFSDRRQVRILLSEKREIHHQEVTVLHISRPLEGGLE-VPEDPSEIDVATLRKYTAILRSFP 144
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: D0NR99_PHYIT (VPS9 domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NR99_PHYIT) HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13 Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1 Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +++ + TG GF + R+VR+LLSE H ++V V+H+SRPL GGL PE+ E+D+ T+ KYTA+L+S+P
Sbjct: 68 NGKQVAVLGSHIHTGKGFSDRRQVRILLSEKREIHHQEVTVLHISRPLEGGLE-VPEDPSEIDVATLRKYTAILRSFP 144
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: V9F7P2_PHYPR (VPS9 domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F7P2_PHYPR) HSP 1 Score: 73.9 bits (180), Expect = 1.280e-13 Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1 Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +++ + TG GF + R+VR+LLSE H ++V V+H+SRPL GGL PE+ E+D+ T+ KYTA+L+S+P
Sbjct: 68 NGKQVAVLGSHIHTGKGFSDRRQVRILLSEKREIHHQEVTVLHISRPLEGGLE-VPEDPSEIDVATLRKYTAILRSFP 144
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A225UX42_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UX42_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.180e-13 Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +++ + TG GF + R+VR+LLSE H ++V V+H+SRPL GG+ PE+ E+D+ T KYTA+L+S+P
Sbjct: 66 NGKQVAVLGSHIHTGKGFNDQRQVRILLSEKREIHHQEVTVLHISRPLAGGIE-VPEDPSEIDVATFRKYTAILRSFP 142
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A2P4YDT4_9STRA (VPS9 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YDT4_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 6.090e-13 Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +++ + TG GF + R+VR+LLSE H ++V V+H+SRPL GG+ PE+ E+D+ T KYTA+L+S+P
Sbjct: 69 NGKQVAVLGSHIHTGRGFNDRRQVRILLSEKREIHHQEVTVLHISRPLEGGIE-VPEDPSEIDVATFRKYTAILRSFP 145
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A8K1CEM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEM3_PYTOL) HSP 1 Score: 71.6 bits (174), Expect = 8.310e-13 Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1 Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +SI QV T GF E R+VR+LLSE H +++ ++H+SRPL+GG+ PE+ E+D+ T +YTA+L+S+P
Sbjct: 72 NGKTVSIIGSQVHTRRGFDEPRKVRILLSEQRDVHHQEIMLLHLSRPLIGGIV-LPEDPNEIDLATFRRYTAILRSFP 148
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Match: A0A6A3J236_9STRA (VPS9 domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3J236_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12 Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 1 NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGGLSWAPENTGELDMITVDKYTAVLKSYP 234
N + +++ + TG GF + R+VR+LLSE L++V V+H+SRPL GG+ PE+ E+D+ T KYTA+L+S+P
Sbjct: 67 NGKQVAVVGSHIHTGKGFKDRRQVRILLSEKREIQLQEVTVLHISRPLEGGIE-IPEDPSEIDVATFRKYTAILRSFP 143 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10644.458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 21 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10644.458.1 >prot_E-siliculosus-1a_F_contig10644.458.1 ID=prot_E-siliculosus-1a_F_contig10644.458.1|Name=mRNA_E-siliculosus-1a_F_contig10644.458.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=78bp NDRHLSIFPQQVVTGAGFPEWRRVRLLLSEDLGQHLRKVRVMHVSRPLMGback to top mRNA from alignment at E-siliculosus-1a_F_contig10644:354..1400- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10644.458.1 ID=mRNA_E-siliculosus-1a_F_contig10644.458.1|Name=mRNA_E-siliculosus-1a_F_contig10644.458.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1047bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10644:354..1400- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10644:354..1400- >mRNA_E-siliculosus-1a_F_contig10644.458.1 ID=mRNA_E-siliculosus-1a_F_contig10644.458.1|Name=mRNA_E-siliculosus-1a_F_contig10644.458.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10644:354..1400- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |