mRNA_E-siliculosus-1a_F_contig10637.451.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10637.451.1 vs. uniprot
Match: PSBA_ECTSI (Photosystem II protein D1 n=1129 Tax=Eukaryota TaxID=2759 RepID=PSBA_ECTSI) HSP 1 Score: 436 bits (1122), Expect = 1.420e-152 Identity = 219/220 (99.55%), Postives = 219/220 (99.55%), Query Frame = 1 Query: 1 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 660 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILM PFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG Sbjct: 141 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMRPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 360
BLAST of mRNA_E-siliculosus-1a_F_contig10637.451.1 vs. uniprot
Match: A0A1N7TJI8_9PHAE (Photosystem II protein D1 n=412 Tax=Eukaryota TaxID=2759 RepID=A0A1N7TJI8_9PHAE) HSP 1 Score: 434 bits (1116), Expect = 1.170e-151 Identity = 213/220 (96.82%), Postives = 219/220 (99.55%), Query Frame = 1 Query: 1 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 660 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPV+ IWLT+LG+STMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNE+LPVA+SAPS+VG Sbjct: 141 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVIAIWLTSLGISTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEVLPVAVSAPSIVG 360
BLAST of mRNA_E-siliculosus-1a_F_contig10637.451.1 vs. uniprot
Match: PSBA_PHATC (Photosystem II protein D1 n=590 Tax=root TaxID=1 RepID=PSBA_PHATC) HSP 1 Score: 421 bits (1082), Expect = 1.740e-146 Identity = 207/220 (94.09%), Postives = 215/220 (97.73%), Query Frame = 1 Query: 1 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 660 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTA+GVSTMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLAS E+LPVA++AP+V G Sbjct: 141 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWLTAMGVSTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVLPVALTAPAVNG 360
BLAST of mRNA_E-siliculosus-1a_F_contig10637.451.1 vs. uniprot
Match: A0A023JEK8_9STRA (Photosystem II protein D1 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A023JEK8_9STRA) HSP 1 Score: 415 bits (1066), Expect = 4.720e-144 Identity = 203/220 (92.27%), Postives = 215/220 (97.73%), Query Frame = 1 Query: 1 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 660 PWIFVAFSAPVAAA+AVF+VYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES ++GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTA+G+STMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLAS E+LPVA++AP+V G Sbjct: 141 PWIFVAFSAPVAAAAAVFVVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESPDFGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWLTAMGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVLPVALTAPAVNG 360
BLAST of mRNA_E-siliculosus-1a_F_contig10637.451.1 vs. uniprot
Match: A0A7S2RD40_9STRA (Photosystem II protein D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD40_9STRA) HSP 1 Score: 412 bits (1059), Expect = 8.300e-143 Identity = 200/220 (90.91%), Postives = 213/220 (96.82%), Query Frame = 1 Query: 1 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 660 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET++ ES N GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPV+GIW+TA+G+STMAFNLNGFNFNQSVVDSEGRVINTWADI+NRADLG+EVMHERNAHNFPLDLA+ E+ PVA+SAP+V G Sbjct: 153 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTDSESTNNGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVLGIWITAMGISTMAFNLNGFNFNQSVVDSEGRVINTWADILNRADLGIEVMHERNAHNFPLDLAAGEVFPVAVSAPAVNG 372
BLAST of mRNA_E-siliculosus-1a_F_contig10637.451.1 vs. uniprot
Match: PSBA_CYAM1 (Photosystem II protein D1 n=18 Tax=Eukaryota TaxID=2759 RepID=PSBA_CYAM1) HSP 1 Score: 408 bits (1049), Expect = 1.820e-141 Identity = 198/218 (90.83%), Postives = 213/218 (97.71%), Query Frame = 1 Query: 1 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSV 654 PWI VAFSAPVAAA+AVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGG+LFSAMHGSLVTSSLIRETSE ES+N GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFL AWPVVGIWLTA+G+STMAFNLNGFNFNQSVVDSEGRVINTWADI+NRA+LG+EVMHERNAHNFPLDLASN ++PVA++APSV Sbjct: 141 PWICVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGALFSAMHGSLVTSSLIRETSENESLNNGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVVGIWLTAIGISTMAFNLNGFNFNQSVVDSEGRVINTWADILNRANLGIEVMHERNAHNFPLDLASNSVVPVALTAPSV 358
BLAST of mRNA_E-siliculosus-1a_F_contig10637.451.1 vs. uniprot
Match: A0A451FLR3_9STRA (Photosystem II protein D1 n=179 Tax=Eukaryota TaxID=2759 RepID=A0A451FLR3_9STRA) HSP 1 Score: 408 bits (1048), Expect = 2.580e-141 Identity = 199/218 (91.28%), Postives = 211/218 (96.79%), Query Frame = 1 Query: 1 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSV 654 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET + S NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTALG+STMAFNLNGFNFNQSVVDS+GRVINTWADI+NRA+LG+EVMHERNAHNFPLDLA + +LPVA++AP+V Sbjct: 141 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETEDGVSANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAIWPVVGIWLTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGIEVMHERNAHNFPLDLAVSNVLPVALNAPAV 358
BLAST of mRNA_E-siliculosus-1a_F_contig10637.451.1 vs. uniprot
Match: A0A0D6KAE8_9CYAN (RnfA-Nqr electron transport subunit (Fragment) n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A0D6KAE8_9CYAN) HSP 1 Score: 403 bits (1035), Expect = 3.470e-141 Identity = 194/218 (88.99%), Postives = 210/218 (96.33%), Query Frame = 1 Query: 1 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSV 654 PWI +AFSAPVAAA+AVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM GVAGVFGGSLFSAMHGSLVTSSL+RET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFLAAWPVVGIW TALG+STMAFNLNGFNFNQSV+DS+GRV+NTWADIINRA+LGMEVMHERNAHNFPLDLA+ E PVA++AP++ Sbjct: 18 PWICLAFSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTENESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVIDSQGRVVNTWADIINRANLGMEVMHERNAHNFPLDLAAGEQAPVALTAPAI 235
BLAST of mRNA_E-siliculosus-1a_F_contig10637.451.1 vs. uniprot
Match: A0A448Z6F3_9STRA (32 kDa thylakoid membrane protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448Z6F3_9STRA) HSP 1 Score: 409 bits (1050), Expect = 1.020e-140 Identity = 200/219 (91.32%), Postives = 210/219 (95.89%), Query Frame = 1 Query: 1 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVV 657 PWIFVAFSAPVAAA+AVFL YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHP HMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES N GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPV+GIW TA+GVSTMAFNLNGFNFNQ+V+DSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLAS EILPVA+ AP++V Sbjct: 201 PWIFVAFSAPVAAATAVFLTYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPLHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESTNNGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVLGIWCTAMGVSTMAFNLNGFNFNQAVIDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEILPVAMEAPAIV 419
BLAST of mRNA_E-siliculosus-1a_F_contig10637.451.1 vs. uniprot
Match: A0A3C1RYZ8_9CYAN (Photosystem II q(B) protein (Fragment) n=1 Tax=Planktothrix sp. UBA8407 TaxID=2055758 RepID=A0A3C1RYZ8_9CYAN) HSP 1 Score: 401 bits (1030), Expect = 1.510e-140 Identity = 192/220 (87.27%), Postives = 208/220 (94.55%), Query Frame = 1 Query: 1 PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 660 PWI VA+SAPVAAA+AVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHM GVAGVFGGSLFSAMHGSLVTSSL+RET+EVES+NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHF L AWPV+GIW TALGVSTMAFNLNGFNFNQS++DS GRVINTWAD++NRA+LGMEVMHERNAHNFPLDLAS E PVA+ AP + G Sbjct: 12 PWICVAYSAPVAAAAAVFLIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTEVESLNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFLLGAWPVIGIWFTALGVSTMAFNLNGFNFNQSIIDSTGRVINTWADVLNRANLGMEVMHERNAHNFPLDLASGESAPVALVAPQING 231 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10637.451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10637.451.1 >prot_E-siliculosus-1a_F_contig10637.451.1 ID=prot_E-siliculosus-1a_F_contig10637.451.1|Name=mRNA_E-siliculosus-1a_F_contig10637.451.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=221bp PWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHback to top mRNA from alignment at E-siliculosus-1a_F_contig10637:1708..2370- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10637.451.1 ID=mRNA_E-siliculosus-1a_F_contig10637.451.1|Name=mRNA_E-siliculosus-1a_F_contig10637.451.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=663bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10637:1708..2370- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10637:1708..2370- >mRNA_E-siliculosus-1a_F_contig10637.451.1 ID=mRNA_E-siliculosus-1a_F_contig10637.451.1|Name=mRNA_E-siliculosus-1a_F_contig10637.451.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1326bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10637:1708..2370- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |