mRNA_E-siliculosus-1a_F_contig10623.444.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10623.444.1 vs. uniprot
Match: A0A6H5JGH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH1_9PHAE) HSP 1 Score: 348 bits (892), Expect = 1.420e-113 Identity = 207/276 (75.00%), Postives = 210/276 (76.09%), Query Frame = 1 Query: 1 SRCQEKVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRL----------------KSRSRIRGADRKGARMELKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPQASPRSPGAHGGNSKGGGVXXXXXXXXXXXXG---------------------------------LGLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWAS 681 +R +VLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRL KSRSRIRGADRKGARME EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPP+A PRSPGAHGGNSK GG XXXXXXX G LGLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWAS Sbjct: 226 ARLLPQVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLYGEPGTGGGGRAGGVSKSRSRIRGADRKGARME------EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPRAPPRSPGAHGGNSKDGGXXXXXXXXVGTGWGXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGGDGLGLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWAS 495
BLAST of mRNA_E-siliculosus-1a_F_contig10623.444.1 vs. uniprot
Match: D7G8K5_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K5_ECTSI) HSP 1 Score: 352 bits (903), Expect = 3.200e-110 Identity = 207/246 (84.15%), Postives = 209/246 (84.96%), Query Frame = 1 Query: 1 SRCQEKVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRL-------------------KSRSRIRGADRKGARMELKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPQASPRSPGAHGGNSKGGGVXXXXXXXXXXXXGLGLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWAS 681 +R +VLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRL KSRSRIRGADRKGARME EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPP A RSPGAHGGNSK GG XXXXXXXXXXX LTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWAS Sbjct: 318 ARLLPQVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLHGESGTGXXXXXXXXXXVSKSRSRIRGADRKGARME------EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPHAPARSPGAHGGNSKDGGGVXXXXXXXXXXXXXXLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWAS 557
BLAST of mRNA_E-siliculosus-1a_F_contig10623.444.1 vs. uniprot
Match: A0A7S4IQC8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQC8_9STRA) HSP 1 Score: 151 bits (382), Expect = 1.520e-38 Identity = 104/258 (40.31%), Postives = 133/258 (51.55%), Query Frame = 1 Query: 1 SRCQEKVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLKSRSRIRGADRKGARMELKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLRE---------------------EEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPQASPRSPGAHGGNSKGGGVXXXXXXXXXXXXGLGLTMFDRVL----------RDLGHGVCRMLNVQYRMNRDICDWAS 681 +R + +L HS+E LV +GT IV+DVR+++D+ + ++ S + RG+DR+ AR E K LR E R RE VV+EVL S +VVL TCVGA + +L + FDLVVIDEAAQALEA+CWIP L+G RLVLAGDHKQL PTV R E GLG TMF+R++ D+ V RML VQYRM+ DI DW+S Sbjct: 12 ARLRPAILPHSLEHLVRAADGTEIVRDVRRELDSYI-KVLSNPKARGSDRRIARREAKALRAEVRRREEGVVREVLGSANVVLCTCVGAGSSALNKLARTAAASPSSAYSGGPGNDSGHFDLVVIDEAAQALEASCWIPALRGSRLVLAGDHKQLPPTVMCRSGEV-------------------------------------------RNGLGRTMFERIMGLYGDDSSKGTDVEGRVSRMLRVQYRMHSDIADWSS 225
BLAST of mRNA_E-siliculosus-1a_F_contig10623.444.1 vs. uniprot
Match: A0A835Z7I8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I8_9STRA) HSP 1 Score: 147 bits (371), Expect = 5.520e-37 Identity = 86/151 (56.95%), Postives = 96/151 (63.58%), Query Frame = 1 Query: 19 VLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLKSRSRIRGA------------------DRKGARMELKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVK 417 VL HS++ALV HEGTA+V D R + L +L R DR+ R +L LRKE R RE VV VLR R VVLATCVGAAT LR+E FDLVVIDEAAQALEAACW+P LKGRRLVLAGDHKQL PT+K Sbjct: 303 VLRHSLDALVRAHEGTALVADARAEAAALRAQLTGRXXXXXXXXXXXXXXXXXXXXXXXXDRRAVRAQLSALRKEIRVREEGVVASVLRKRRVVLATCVGAATRLLRDETFDLVVIDEAAQALEAACWVPALKGRRLVLAGDHKQLPPTIK 453
BLAST of mRNA_E-siliculosus-1a_F_contig10623.444.1 vs. uniprot
Match: A0A448ZKX4_9STRA (R3H domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKX4_9STRA) HSP 1 Score: 144 bits (364), Expect = 4.760e-36 Identity = 101/258 (39.15%), Postives = 137/258 (53.10%), Query Frame = 1 Query: 1 SRCQEKVLEHSMEALVSRHEGTAIVKDVRKDIDTLL-----------GRLKS-RSRIRGA-DRKGARMELKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLR---------------EEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPQASPRSPGAHGGNSKGGGVXXXXXXXXXXXXGLGLTMFDRVL---RDLGHGVCRMLNVQYRMNRDICDWAS 681 +R + +L+HS+EALV +GT IV+DVR++++ L GR S R R + A D++ A ++ TLR+E RARE KVV+E++RS VVLAT VGA +L + FDLVVIDEAAQALEA+CWIPIL+GR++VLAGDH QL PT+KS+ GLG+T+F+R++ R + RML +QYRM+ I DWAS Sbjct: 332 ARIKPSILKHSLEALVQSSDGTEIVRDVRRELEACLRTVSRDRSGAGGRSGSGRPRKKDALDKRAAYRDIGTLRREVRAREEKVVRELIRSAHVVLATTVGADNRALNSITNPTETDGHTAGDDPGFDLVVIDEAAQALEASCWIPILRGRKVVLAGDHCQLPPTIKSKDPRVAA-------------------------------------------GLGVTLFERLMDLYRTREREISRMLKIQYRMHHQIADWAS 546
BLAST of mRNA_E-siliculosus-1a_F_contig10623.444.1 vs. uniprot
Match: A0A7S4A8W4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A8W4_9STRA) HSP 1 Score: 144 bits (362), Expect = 8.920e-36 Identity = 98/262 (37.40%), Postives = 137/262 (52.29%), Query Frame = 1 Query: 1 SRCQEKVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLKSRSRIRGA-----------------DRKGARMELKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEE--------------FDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPQASPRSPGAHGGNSKGGGVXXXXXXXXXXXXGLGLTMFDRVLRDLGH----GVCRMLNVQYRMNRDICDWAS 681 +R + ++++S+EALV +GT IV+DVRK++++ L + + +G+ DR+ A E+K LRKE R RE KVVQE+++S VVLAT VGA L + FDLV+IDEAAQALEA+CWIPIL+GR++VLAGDH QL PT+KS+ GLG+T+F+R++ +L H + RML +QYRM+ DI DWAS Sbjct: 381 ARIKPSIVKYSLEALVQSSDGTEIVRDVRKELESYLKVMSRSNMAKGSKSSKPGSKGQQQRQAKFDRRAAYKEIKALRKEVRIREEKVVQELIQSAHVVLATTVGADNRVLNQITHPRDGNNKSGDQMGFDLVIIDEAAQALEASCWIPILRGRKVVLAGDHCQLPPTIKSKDHRV-------------------------------------------VAGLGVTLFERLM-NLYHTQEQAISRMLQIQYRMHHDIADWAS 598
BLAST of mRNA_E-siliculosus-1a_F_contig10623.444.1 vs. uniprot
Match: W7TRN4_9STRA (Dna-binding protein smubp-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRN4_9STRA) HSP 1 Score: 143 bits (361), Expect = 9.840e-36 Identity = 84/138 (60.87%), Postives = 103/138 (74.64%), Query Frame = 1 Query: 28 HSMEALVSRHEGTAIVKDVRKDIDTLLGRLKSRS--RIRGADRKGARMELKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEA 435 +S+EALV +GTA+V+D+R ++ L R S ++R A R+ R E + LR+E R RE +VV EV+ SR+VVL TCVGA LREE FDLVVIDEAAQALEAACWIPI +G R+VLAGDHKQLAPTVKS +AEA Sbjct: 342 YSLEALVEGADGTALVRDIRAELAALERRGVSPKTPQLREARRQW-RSETRALRRELRTREARVVGEVVSSREVVLCTCVGAGARVLREERFDLVVIDEAAQALEAACWIPIQRGGRVVLAGDHKQLAPTVKSGRAEA 478
BLAST of mRNA_E-siliculosus-1a_F_contig10623.444.1 vs. uniprot
Match: A0A7S2YDZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YDZ8_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.280e-35 Identity = 79/156 (50.64%), Postives = 108/156 (69.23%), Query Frame = 1 Query: 1 SRCQEKVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLKSRSRIRGADRKGARMELKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEE--------------FDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRK 426 +R Q ++L +S+EALV +GT IV++VR ++ + L ++ S + RG +++ A E+K+LR+E R RE KVV+E+L S VVLATCVG+A L+ FDLVVIDEAAQALEAACWIP L+G+RLVLAGDHKQL PT++S + Sbjct: 18 ARLQPEILPYSVEALVQAADGTEIVREVRSELQSFL-QILSNPKSRGNEKRIAYREMKSLRQEVRQREEKVVRELLTSAQVVLATCVGSANSILKSFTRGNGDNNNKKDGGFFDLVVIDEAAQALEAACWIPALRGKRLVLAGDHKQLPPTIQSNQ 172
BLAST of mRNA_E-siliculosus-1a_F_contig10623.444.1 vs. uniprot
Match: A0A7S3MFF8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFF8_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.960e-35 Identity = 79/164 (48.17%), Postives = 109/164 (66.46%), Query Frame = 1 Query: 1 SRCQEKVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLKSRSRIRGAD-----------RKGARMELKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILK-----GRRLVLAGDHKQLAPTVKSRKAEAGCL 444 +R K++++++++++S EGT IVKDVRKDID L + + + R A+ ++ R E+++L KEAR RE VV +LR D+VL+TCVGA + L++ +FD+VVIDEAAQ LEAACWIPILK G VLAGDH QL PT+KS +AE G L Sbjct: 126 ARISSKIMKYALDSIISTDEGTDIVKDVRKDIDELRQAMSKKGKRRPANQDEPGVSFAQVKRDQRSEMRSLMKEARQRERAVVVNILRKADIVLSTCVGAGSRLLKDLQFDMVVIDEAAQGLEAACWIPILKINSQTGGTCVLAGDHCQLPPTIKSPQAERGGL 289
BLAST of mRNA_E-siliculosus-1a_F_contig10623.444.1 vs. uniprot
Match: A0A7S3PU07_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PU07_9STRA) HSP 1 Score: 142 bits (359), Expect = 2.260e-35 Identity = 80/146 (54.79%), Postives = 106/146 (72.60%), Query Frame = 1 Query: 1 SRCQEKVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLKSRSRIRGADRKGARMELKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLR--EEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAE 432 +R Q +L+ S+E LV +GT IV D+R ++ + L ++ S + R DR+ A E++TLRKE R REGKV+Q V+ + VV AT VGAA+ L E+ FDLV+IDEAAQALEA+CWIPILKG+R+VLAGDH QL PT+KSR +E Sbjct: 415 ARIQPAILKFSLEYLVQNADGTEIVSDIRSEMKSYL-QIASNPKTRSVDRRSAYREIRTLRKEIRQREGKVLQGVISNAQVVFATNVGAASSILNKCEKSFDLVIIDEAAQALEASCWIPILKGKRVVLAGDHCQLPPTIKSRHSE 559 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10623.444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10623.444.1 >prot_E-siliculosus-1a_F_contig10623.444.1 ID=prot_E-siliculosus-1a_F_contig10623.444.1|Name=mRNA_E-siliculosus-1a_F_contig10623.444.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=227bp SRCQEKVLEHSMEALVSRHEGTAIVKDVRKDIDTLLGRLKSRSRIRGADRback to top mRNA from alignment at E-siliculosus-1a_F_contig10623:473..2239- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10623.444.1 ID=mRNA_E-siliculosus-1a_F_contig10623.444.1|Name=mRNA_E-siliculosus-1a_F_contig10623.444.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1767bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10623:473..2239- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10623:473..2239- >mRNA_E-siliculosus-1a_F_contig10623.444.1 ID=mRNA_E-siliculosus-1a_F_contig10623.444.1|Name=mRNA_E-siliculosus-1a_F_contig10623.444.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1362bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10623:473..2239- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |