mRNA_E-siliculosus-1a_F_contig10612.438.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10612.438.1 vs. uniprot
Match: D8LLG5_ECTSI (DEAD/DEAH box helicase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG5_ECTSI) HSP 1 Score: 257 bits (656), Expect = 4.780e-77 Identity = 136/156 (87.18%), Postives = 140/156 (89.74%), Query Frame = 1 Query: 52 RYRFDPLRALEYLKSLPIYEDQAVYSETLPGRAGEYEDTLRPLHPEYPPPHTLGPESLSNWQRLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLKELVGASPYLSERVRPMTLDGDTPFRE 519 + RFDPLRALEYLKSLPIYEDQAVYSETLPGR+GEYEDTLRPLHPE E RLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVI+AIVGPRPDAVALYLFPTKALAQDQLRSLKELVGASPYLS+RVRPMTLDGDTPFRE Sbjct: 94 KLRFDPLRALEYLKSLPIYEDQAVYSETLPGRSGEYEDTLRPLHPEL----KAALERSKGVTRLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIDAIVGPRPDAVALYLFPTKALAQDQLRSLKELVGASPYLSQRVRPMTLDGDTPFRE 245
BLAST of mRNA_E-siliculosus-1a_F_contig10612.438.1 vs. uniprot
Match: A0A6H5KP27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP27_9PHAE) HSP 1 Score: 256 bits (654), Expect = 8.310e-76 Identity = 138/161 (85.71%), Postives = 139/161 (86.34%), Query Frame = 1 Query: 37 DTTVVRYRFDPLRALEYLKSLPIYEDQAVYSETLPGRAGEYEDTLRPLHPEYPPPHTLGPESLSNWQRLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLKELVGASPYLSERVRPMTLDGDTPFRE 519 D + RFDPLRALEYLKSLPIYEDQAVYSETLPGRAGEYEDT RPLHPE E RLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLK LVGASPYLSERVRPMTLDGDTPFRE Sbjct: 273 DGAAEKLRFDPLRALEYLKSLPIYEDQAVYSETLPGRAGEYEDTKRPLHPEV----KAALERSKGVARLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLKGLVGASPYLSERVRPMTLDGDTPFRE 429
BLAST of mRNA_E-siliculosus-1a_F_contig10612.438.1 vs. uniprot
Match: A0A7S2WFF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFF7_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.390e-33 Identity = 76/137 (55.47%), Postives = 90/137 (65.69%), Query Frame = 1 Query: 91 KSLPIYEDQAVYSETLPGRAGEYEDTLRPLHPEYPPPHTLGPESLSNWQRLFKHQALAIDAAAA-GRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLKELVGASPYLSERVRPMTLD 498 K LP Y DQ ++ ETLP RAGE+ + L L E P + RLF+HQA AIDAA G HVALST TSSGKSV FNV V+ +V +PDAVA+YLFPTKALAQDQL S + L+G SP L V P+T+D Sbjct: 1 KGLPFYRDQVMHVETLPPRAGEFVE-LSDLAVEIAPCVLEALQKSKGISRLFRHQADAIDAAVGHGMHVALSTGTSSGKSVAFNVPVLHRLV-EQPDAVAIYLFPTKALAQDQLGSFQGLIGGSPALESSVLPLTVD 135
BLAST of mRNA_E-siliculosus-1a_F_contig10612.438.1 vs. uniprot
Match: F2TYE6_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TYE6_SALR5) HSP 1 Score: 129 bits (325), Expect = 1.450e-31 Identity = 78/172 (45.35%), Postives = 108/172 (62.79%), Query Frame = 1 Query: 1 TKNKAYNDFTQNDTTVVRYRFDPLRALEYLKSLPIYEDQAVYSETLPGRAGEYEDTLRPLHPEYPPPHTLGPESLSNWQRLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLKELVGASPYLSERVRPMTLDGDTPFR 516 T + Y ++T + +FDP L++L LP+ + +++ ETLP RA + + RPL P HTL + QRLF HQA ++AA G HV +STATSSGKS+V+++ +EA++ + VALY+FPTKALAQDQLRSL+E VGA +L + VR LD DTP R Sbjct: 235 TASVQYTNYTGDYRATPPAQFDPKEILDHLLRLPLAKGHSLHVETLPARAPVFGELERPL--PSPLQHTLADLGI---QRLFSHQAEGVNAARDGAHVMISTATSSGKSLVYHLPTMEALLSDPHNTVALYIFPTKALAQDQLRSLREFVGAG-WLGDAVRADCLDADTPAR 400
BLAST of mRNA_E-siliculosus-1a_F_contig10612.438.1 vs. uniprot
Match: A0A835ZL03_9STRA (DEAD/DEAH box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL03_9STRA) HSP 1 Score: 110 bits (276), Expect = 4.960e-27 Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 1 Query: 238 RLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLKELVGASPYLSERVRPMTLDGDTPFRE 519 R +KHQA+ I+A AG+H+A+STATSSGKSVVF V V++A++ P+AVAL++FPTKALAQDQLRS++ L+ A +L+ + LDGDTPF E Sbjct: 1 RFYKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAE 94
BLAST of mRNA_E-siliculosus-1a_F_contig10612.438.1 vs. uniprot
Match: A0A2M7KNY8_9BACT (Uncharacterized protein n=1 Tax=Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20 TaxID=1973912 RepID=A0A2M7KNY8_9BACT) HSP 1 Score: 110 bits (276), Expect = 5.140e-25 Identity = 70/152 (46.05%), Postives = 91/152 (59.87%), Query Frame = 1 Query: 64 DPLRALEYLKSLPIYEDQAVYSETLPGRAGEYEDTLRPLHPEYPPPHTLGPESLSNWQRLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLKELVGASPYLSERVRPMTLDGDTPFRE 519 D +E LK+ P Y Q V+ E LPGR +Y + PLHP LG + + +RL++HQ A+ A AGRHV + TAT+SGK++ +N VIEAI+ R ALYLFPTKALAQDQLR L EL L ++ T DGDTP ++ Sbjct: 4 DCANLVEELKAAPDYNGQIVHHEILPGRRAKYAELDPPLHPSLA--EALGRQGI---KRLYQHQVEALTLARAGRHVMVVTATASGKTLCYNAPVIEAILADRGTR-ALYLFPTKALAQDQLRKLNEL-----DLFPTLKAATYDGDTPAKD 144
BLAST of mRNA_E-siliculosus-1a_F_contig10612.438.1 vs. uniprot
Match: A0A8J9S2L8_9CHLO (Probable ATP-dependent helicase hrq1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S2L8_9CHLO) HSP 1 Score: 110 bits (274), Expect = 1.050e-24 Identity = 67/149 (44.97%), Postives = 97/149 (65.10%), Query Frame = 1 Query: 67 PLRALEYLKSLPIYEDQAVYSETLPGRAGEYEDTLRPLHPEYPPPHTLGPESLSNWQRLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLKELVGASPYLSERVRPMTL-DGDTP 510 P L +L+++ Y+DQ V++E +P RA +Y + PL P L +++ LF HQA AIDAA AG+HV + T+T+SGKS+ +N+ ++EA+V P A ALY+FPTKALAQDQLR+LKEL A+ ++ + + DGDTP Sbjct: 605 PEAFLAHLRTVSWYKDQIVHTEQIPARAAQYSEPAAPL--SSPVRAALSARGVTH---LFTHQAQAIDAARAGKHVVVCTSTASGKSLCYNLPILEALVRD-PQATALYMFPTKALAQDQLRALKELCAAA--FGDKAPCIDIYDGDTP 745
BLAST of mRNA_E-siliculosus-1a_F_contig10612.438.1 vs. uniprot
Match: A0A0L0G3V6_9EUKA (Helicase ATP-binding domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G3V6_9EUKA) HSP 1 Score: 108 bits (271), Expect = 2.220e-24 Identity = 67/143 (46.85%), Postives = 89/143 (62.24%), Query Frame = 1 Query: 79 LEYLKSLPIYEDQAVYSETLPGRAGEYEDTLRPLHPEYPPPHTLGPESLSNWQRLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLKELVGASPYLSERVRPMTLDGDT 507 L +LKSLP Y Q + E +P RA ++ +T P + +S +RL+ HQA AI ++AG HV L T+TSSGKS+ +N+ V++AIV P +ALYLFPTKALAQDQ R+LK+L A L RV+ T DGDT Sbjct: 453 LAHLKSLPFYHGQIAHVEHIPARAAKFSETDIDEDPNIGWSVADAVKCVSKIERLYTHQAHAIAHSSAGNHVVLCTSTSSGKSLAYNIPVLQAIVDD-PTTMALYLFPTKALAQDQQRALKKLT-AHDTLCNRVKVATFDGDT 593
BLAST of mRNA_E-siliculosus-1a_F_contig10612.438.1 vs. uniprot
Match: A0A7V2CKQ6_9BACT (DEAD/DEAH box helicase (Fragment) n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7V2CKQ6_9BACT) HSP 1 Score: 105 bits (263), Expect = 4.750e-24 Identity = 65/135 (48.15%), Postives = 82/135 (60.74%), Query Frame = 1 Query: 106 YEDQAVYSETLPGRAGEYEDTLRPLHPEYPPPHTLGPESLSNWQRLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLKELVGASPYLSERVRPMTLDGDTP 510 Y Q E LP R Y PLHP L E + + L+ HQA AIDA AAGR+V + T T+SGK++ +N+ V+++++ P+A ALYLFPTKALAQDQL +LK L A LS VRP T DGDTP Sbjct: 16 YRGQIAAVEELPARPARYAPPQTPLHPVLR--QMLRAEGI---EELYLHQARAIDALAAGRNVVVVTGTASGKTMCYNLPVLQSLL-ESPEARALYLFPTKALAQDQLGTLKRLAAADLILSGTVRPATYDGDTP 144
BLAST of mRNA_E-siliculosus-1a_F_contig10612.438.1 vs. uniprot
Match: A0A5A8CYB9_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYB9_CAFRO) HSP 1 Score: 107 bits (267), Expect = 8.440e-24 Identity = 70/165 (42.42%), Postives = 99/165 (60.00%), Query Frame = 1 Query: 19 NDFTQNDTTVVRYRFDPLRALEYLKSL-PIYEDQAVYSETLPGRAGEYEDTLRPLHPEYPPP-HTLGPESLSNWQRLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLKELVGASPYLSERVRPMTLDGDT 507 N ++ D ++V P+ + SL P Y DQ + T+ R ++ D RP+HP H G + F+HQ+LAIDAA AG+HV +ST+TSSGKS+VF+V V + ++ R AVA+ +FPTKALAQDQLR+++E S L+ VR TLDGD+ Sbjct: 191 NGPSKPDLSMVELTLRPVGSSMQRSSLRPWYVDQLRHVHTILPRPAKFRDVERPVHPAIRMAMHARG------ITKFFEHQSLAIDAALAGKHVVISTSTSSGKSLVFSVPVFDRLLRDRA-AVAILIFPTKALAQDQLRAVREFCRGSATLASAVRAATLDGDS 348 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10612.438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10612.438.1 >prot_E-siliculosus-1a_F_contig10612.438.1 ID=prot_E-siliculosus-1a_F_contig10612.438.1|Name=mRNA_E-siliculosus-1a_F_contig10612.438.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=176bp TKNKAYNDFTQNDTTVVRYRFDPLRALEYLKSLPIYEDQAVYSETLPGRAback to top mRNA from alignment at E-siliculosus-1a_F_contig10612:490..2260- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10612.438.1 ID=mRNA_E-siliculosus-1a_F_contig10612.438.1|Name=mRNA_E-siliculosus-1a_F_contig10612.438.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1771bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10612:490..2260- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10612:490..2260- >mRNA_E-siliculosus-1a_F_contig10612.438.1 ID=mRNA_E-siliculosus-1a_F_contig10612.438.1|Name=mRNA_E-siliculosus-1a_F_contig10612.438.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1056bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10612:490..2260- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |