mRNA_E-siliculosus-1a_F_contig1061.436.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5JU76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU76_9PHAE) HSP 1 Score: 226 bits (576), Expect = 1.780e-66 Identity = 120/144 (83.33%), Postives = 126/144 (87.50%), Query Frame = 2 Query: 1028 PPPHFAHHPALGRRKFQARVDESAVKLPPQERRDTAAETRPARGNRRGLEIELS----PEQNKASFAAAGLWPVNKDRAISRLRGTAKRNARPTDRPPLEDVAIVASNQELEESLGGTALRDLEVRGHLVVGVEASAVMVGGLL 1447 PPPHFAHHPALGRRKFQAR DESAVKLPPQERRDTAAE R ARGNRR L +E+ EQNKASFAAA LWPVNKDRAISRL GTAKR RPTDRPPLEDV+IVAS QELEESLGG A++DLEV GHLVVGV+ASAVMVGGLL Sbjct: 61 PPPHFAHHPALGRRKFQARGDESAVKLPPQERRDTAAEKRRARGNRRALRLEIELFTGAEQNKASFAAAELWPVNKDRAISRLWGTAKRKTRPTDRPPLEDVSIVASIQELEESLGGAAVKDLEVNGHLVVGVKASAVMVGGLL 204
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5JBS6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS6_9PHAE) HSP 1 Score: 202 bits (515), Expect = 1.130e-54 Identity = 116/198 (58.59%), Postives = 142/198 (71.72%), Query Frame = 3 Query: 615 TSQGTRTLNAIAET--KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSF 1187 T QGT+T+ A AE K +S RS ENTT VV+TISANG T+APTIIF+G+RL+PDW NGP+ ARY C T+SS ++ + F+ YLKD HKQL G+LDGKPH LV+ DG AS V S + I+LAM+LNI+LFQLP TSHITQPLDV G FK+E+TK L + NGG+LP KRD+PGVIA AW+ S Sbjct: 168 TPQGTKTMKAFAEAGQKVVESMRSNSLENTT----VVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTC-TDSSFMQGDVFIKYLKDFHKQLDDRGVLDGKPHTLVL-DGHASHV--SYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQRSL 357
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE) HSP 1 Score: 197 bits (501), Expect = 2.070e-53 Identity = 110/182 (60.44%), Postives = 135/182 (74.18%), Query Frame = 3 Query: 657 KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSF 1187 K +S RS RENTT VV+TISANG T+APTIIF+G+RL+PDW NGP+ ARY C T+SS ++ + F+ YLKD HKQL G+LDGKPHILV+ DG AS V S + I+LAMDLNI+LF+LP TSHITQPLDV G FK+E+TK L + NGG+LP KRD+PGVIA AW++S Sbjct: 10 KVVESMRSNSRENTT----VVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTC-TDSSFMQGDVFIMYLKDFHKQLDDRGVLDGKPHILVL-DGHASHV--SYEFIKLAMDLNIILFKLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQNSL 183
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5KC91_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC91_9PHAE) HSP 1 Score: 198 bits (503), Expect = 2.190e-53 Identity = 114/197 (57.87%), Postives = 140/197 (71.07%), Query Frame = 3 Query: 657 KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSFRRSRTRHHSPPRGYG 1232 K +S RS RENTT VV+TISANG T+APTIIF+G+RL+PDW NGP+ ARY C T+SS ++ + F++YLKD HKQL G+LD KPHILV+ DG AS V S + I+LAM+LNI+LFQLP TSHITQPLDV G FK+E+TK L + NGG+LP KRD+PGVIA AW+ SF R + RG G Sbjct: 10 KVVESMRSNSRENTT----VVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTC-TDSSFMQGDVFINYLKDFHKQLDDRGVLDRKPHILVL-DGHASHV--SYEVIKLAMELNIILFQLPSRTSHITQPLDVVAFGTFKKEVTKVLQDYCHANGGLLPPKRDVPGVIAAAWQRSFTPERHKASFGGRGCG 198
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5JYS0_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS0_9PHAE) HSP 1 Score: 198 bits (503), Expect = 3.250e-52 Identity = 115/198 (58.08%), Postives = 140/198 (70.71%), Query Frame = 3 Query: 615 TSQGTRTLNAIAET--KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSF 1187 T QGT+T A AE+ K S RS RENTTT VV TISA+G T+APTIIF+G RL+ DW NGP GARY C T+SS ++ + F+ YLKD HKQ G GLLDGKPHIL++ DG +S V + RLAM+L I+L QLP TSHITQPLDV G FK+ +T+ L+SF +GG+LP KRD+PGVIA+AWK SF Sbjct: 148 TPQGTKTTKAFAESGQKVVGSMRSNSRENTTT---VVVTISADGHTWAPTIIFKGHRLQADWFVERNGPEGARYTC-TDSSFMQGDVFIAYLKDFHKQFGERGLLDGKPHILLL-DGHSSHVRV--EVTRLAMNLKIILIQLPSHTSHITQPLDVVAFGRFKKSVTRVLASFYHNSGGLLPLKRDMPGVIADAWKLSF 338
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5KHG4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG4_9PHAE) HSP 1 Score: 195 bits (495), Expect = 1.460e-51 Identity = 114/198 (57.58%), Postives = 140/198 (70.71%), Query Frame = 3 Query: 615 TSQGTRTLNAIAET--KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSF 1187 T QGT+T+ A AE K +S RS REN T VV+TIS NG T+APTIIF+G+RL+ DW NGP+ ARY C T+SS ++ + F+ YLKD +KQL G+LDGKPHILV+G G AS V S + I+LAM+LNI+LFQLP TSHITQPLDV G FK+E+TK L + NGG LP KRD+P VIA AW+ SF Sbjct: 111 TPQGTKTMKAFAEVGQKVVESMRSNSRENAT----VVTTISTNGVTWAPTIIFKGQRLQLDWFAERNGPKDARYTC-TDSSFMQGDVFIKYLKDFYKQLDDRGVLDGKPHILVLG-GHASLV--SYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGSLPLKRDVPSVIAAAWQRSF 300
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE) HSP 1 Score: 199 bits (505), Expect = 1.780e-51 Identity = 115/204 (56.37%), Postives = 146/204 (71.57%), Query Frame = 3 Query: 615 TSQGTRTLNAIAET--KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSFRRSRTR 1205 T QG +T+ A + K +S R+ RENTT +V+TISA+G T+APTIIF+G+RL+PDW NGP ARY C T+SS ++ N F+ YLKD H+QL GL+DGKPHIL++ DG AS V S + I+LAM+LNIVLFQLP TSHITQPLDV G FKRE+TK LS + +GG+LP+KRD+PGVIA AW ++F R R Sbjct: 172 TPQGNKTMKAYCQAGQKVVESVRANSRENTT----LVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTC-TDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLL-DGHASHV--SVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNR 367
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5J9B8_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B8_9PHAE) HSP 1 Score: 189 bits (480), Expect = 1.060e-50 Identity = 106/179 (59.22%), Postives = 129/179 (72.07%), Query Frame = 3 Query: 666 DSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSF 1187 +S RS RENTT VV+TISANG T+APTIIF G+RL+PDW NGP+ ARY C T+SS ++ + F+ Y KD HKQL G+LDGKPH LV+ D AS V S + I+LAM+LNI+LFQLP TSHITQPLDV G FK+E+T L + NGG+LP KRD+PGVIA AW+ SF Sbjct: 13 ESMRSNSRENTT----VVTTISANGATWAPTIIFRGQRLQPDWFAERNGPKDARYTC-TDSSFMQGDVFIKYFKDFHKQLDDRGVLDGKPHTLVL-DEHASYV--SYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTTVLQDYYHANGGLLPLKRDVPGVIAAAWQRSF 183
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE) HSP 1 Score: 199 bits (505), Expect = 2.080e-50 Identity = 115/204 (56.37%), Postives = 146/204 (71.57%), Query Frame = 3 Query: 615 TSQGTRTLNAIAET--KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSFRRSRTR 1205 T QG +T+ A + K +S R+ RENTT +V+TISA+G T+APTIIF+G+RL+PDW NGP ARY C T+SS ++ N F+ YLKD H+QL GL+DGKPHIL++ DG AS V S + I+LAM+LNIVLFQLP TSHITQPLDV G FKRE+TK LS + +GG+LP+KRD+PGVIA AW ++F R R Sbjct: 413 TPQGNKTMKAYCQAGQKVVESVRANSRENTT----LVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTC-TDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLL-DGHASHV--SVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNR 608
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Match: A0A6H5KN20_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN20_9PHAE) HSP 1 Score: 192 bits (487), Expect = 2.220e-50 Identity = 114/202 (56.44%), Postives = 141/202 (69.80%), Query Frame = 3 Query: 609 SATSQGTRTLNAIAET--KAADSFRSEMRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWL--NNGPRGARYACCTESSSIRTNAFMDYLKDLHKQLGGLGLLDGKPHILVVGDGLASRVVASSDAIRLAMDLNIVLFQLPPPTSHITQPLDV---GNFKRELTKALSSFRLKNGGILPRKRDLPGVIAEAWKSSFRR 1193 S T QGT+T A AE+ K + RS RENTT VV+TIS +G T+APTIIF+G+RL+ DW NGP GARY C T+SS ++ + F+ YLKD HKQLG GLLDGKPHIL++ DG AS V S RLAM+L I+LFQLP TSHITQPL+V G FK+ +T+ L+SF +GG+LP KRD+P VIA+A K RR Sbjct: 226 STTPQGTKTTKAFAESGQKVVGAMRSNSRENTT----VVATISVDGHTWAPTIIFKGQRLQADWFVERNGPEGARYTC-TDSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLL-DGHASHV--SVQVFRLAMNLRIILFQLPSHTSHITQPLNVVAFGRFKKSVTRVLASFYHNSGGLLPLKRDMPSVIADASKKKERR 419 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1061.436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1061.436.1 >prot_E-siliculosus-1a_F_contig1061.436.1 ID=prot_E-siliculosus-1a_F_contig1061.436.1|Name=mRNA_E-siliculosus-1a_F_contig1061.436.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=185bp MRENTTTTTTVVSTISANGDTFAPTIIFEGRRLEPDWLNNGPRGARYACCback to top mRNA from alignment at E-siliculosus-1a_F_contig1061:27992..30937+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1061.436.1 ID=mRNA_E-siliculosus-1a_F_contig1061.436.1|Name=mRNA_E-siliculosus-1a_F_contig1061.436.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2946bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1061:27992..30937+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1061:27992..30937+ >mRNA_E-siliculosus-1a_F_contig1061.436.1 ID=mRNA_E-siliculosus-1a_F_contig1061.436.1|Name=mRNA_E-siliculosus-1a_F_contig1061.436.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1110bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1061:27992..30937+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |