mRNA_E-siliculosus-1a_F_contig106.431.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig106.431.1 vs. uniprot
Match: D7FL86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL86_ECTSI) HSP 1 Score: 276 bits (707), Expect = 1.390e-93 Identity = 154/156 (98.72%), Postives = 154/156 (98.72%), Query Frame = 1 Query: 1 MPSVLRGTGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSKVR 468
MPSVLR TGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK R
Sbjct: 1 MPSVLRETGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSKAR 156
BLAST of mRNA_E-siliculosus-1a_F_contig106.431.1 vs. uniprot
Match: A0A6H5KTC9_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC9_9PHAE) HSP 1 Score: 223 bits (569), Expect = 9.440e-71 Identity = 115/146 (78.77%), Postives = 117/146 (80.14%), Query Frame = 1 Query: 70 QDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXX-------------SRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSKVR 468
+DVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLR SRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWF+VDECDVDGGDDMWPKCGGESLGSKVR
Sbjct: 131 EDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRQDGFVFANYVVAALVRVFRLLKXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFVVDECDVDGGDDMWPKCGGESLGSKVR 276
BLAST of mRNA_E-siliculosus-1a_F_contig106.431.1 vs. uniprot
Match: D8LJT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT9_ECTSI) HSP 1 Score: 230 bits (587), Expect = 2.960e-67 Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 1 Query: 70 QDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK 462
+DVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK
Sbjct: 176 EDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK 306
BLAST of mRNA_E-siliculosus-1a_F_contig106.431.1 vs. uniprot
Match: A0A2D4BDQ3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDQ3_PYTIN) HSP 1 Score: 52.4 bits (124), Expect = 6.480e-5 Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = 1 Query: 70 QDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFIT-----TVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVD 411
+D+L+ R IA++YV+TWF PD++ ++P + G + +V SL+ +RXXXXXXXXXXXX +RK+ V ++ RL +++G+++ H+L C W +V D D
Sbjct: 165 EDMLITDRYLIAKRYVTTWFLPDLISSLPTEYIFGGVMDGSHDKSVVSLKLTRVIRXXXXXXXXXXXXLRQFARKIEDV---LEIDAVGARLSQVIGQVLLVTHILACFWHLVGYSDDD 280 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig106.431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig106.431.1 >prot_E-siliculosus-1a_F_contig106.431.1 ID=prot_E-siliculosus-1a_F_contig106.431.1|Name=mRNA_E-siliculosus-1a_F_contig106.431.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=156bp MPSVLRGTGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGTback to top mRNA from alignment at E-siliculosus-1a_F_contig106:83357..84519+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig106.431.1 ID=mRNA_E-siliculosus-1a_F_contig106.431.1|Name=mRNA_E-siliculosus-1a_F_contig106.431.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1163bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:83357..84519+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig106:83357..84519+ >mRNA_E-siliculosus-1a_F_contig106.431.1 ID=mRNA_E-siliculosus-1a_F_contig106.431.1|Name=mRNA_E-siliculosus-1a_F_contig106.431.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=936bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:83357..84519+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |