mRNA_E-siliculosus-1a_F_contig106.428.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig106.428.1 vs. uniprot
Match: A0A6H5K0H9_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H9_9PHAE) HSP 1 Score: 606 bits (1562), Expect = 5.120e-197 Identity = 522/570 (91.58%), Postives = 525/570 (92.11%), Query Frame = 3 Query: 201 MSGSSPISTPTASPPAAAAESVGPSATEXXXXXXXXX--AHPYHLELTPQQQHDADQAAIKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIPGLEDKRAKRGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTGXXXXXXXXXXXXXXXXXXXXXXXXXXXTEFRDLGNPTSPLAAAPGVQQEEVGAAGGGEASAGGDGAYGPDIQAMEEAXXXXXXXXXXXXXXXAAQSPYGMPPHMSMAGMGMGYSPYVHMAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----GSPMHGYGLHAMYGGYPGMMGMPYPFQAHGYPGMPGYGVPGMGSYPSLAAGGGDPTLASSSFGMNGMAAMQLAAQSMHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPXXYHDPNHPQHQQHIDLNQPHEVQSHQLTYHQHHL 1889
MSGSSPISTPTA PPAAA ESV PSAT+ XXXXXXX AHPY LELTPQQQHDADQAAIKA XXXX XXXXXXXXXXXXXXXXXXXX IPGLEDKRAKRGFSKRVTLRDLERYFEYPIE+VSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTG XXXXXXXXXXXXXXXXXXXXX TEF DLGNPTSPLA APGV QEE G AG GEASAGGDGAYGPDIQAMEEA XXXXXXXXXXXXXAAQSPYGMPPHMSMAGMGMGYSPYVHMAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GSPMHGYGLHAMYGGYPGMMGMPYPFQAHGYPGMPGYGVPGMGSYPSLAAGGGDPTLASSSFGM+GMAAMQLAAQSMHQXXXXXXXXXXXXXXXXXXXXXXXXXX HPXXYHDPNHPQHQQHIDLNQPHEVQSHQLTYHQHHL
Sbjct: 1 MSGSSPISTPTALPPAAA-ESVEPSATDQQXXXXXXXXXAHPYDLELTPQQQHDADQAAIKAAXXXXEAVHXXXXXXXXXXXXXXXXXXXXXIPGLEDKRAKRGFSKRVTLRDLERYFEYPIEDVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTGGXXXXXXXXXXXXXXXXXXXXXA----TEFGDLGNPTSPLAEAPGVPQEEAGPAGVGEASAGGDGAYGPDIQAMEEAAAXXXXXXXXXXXXXAAQSPYGMPPHMSMAGMGMGYSPYVHMAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPMHGYGLHAMYGGYPGMMGMPYPFQAHGYPGMPGYGVPGMGSYPSLAAGGGDPTLASSSFGMSGMAAMQLAAQSMHQXXXXXXXXXXXXXXXXXXXXXXXXXX------------HPXXYHDPNHPQHQQHIDLNQPHEVQSHQLTYHQHHL 553
BLAST of mRNA_E-siliculosus-1a_F_contig106.428.1 vs. uniprot
Match: D8LJT6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT6_ECTSI) HSP 1 Score: 474 bits (1221), Expect = 9.810e-149 Identity = 542/731 (74.15%), Postives = 545/731 (74.56%), Query Frame = 3 Query: 201 MSGSSPISTPTASPPAAAAESVGPSATEXXXXXXXXXAHPYHLELTPQQQHDADQAAIKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIPGLEDKRAKRGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTGXXXXXXXXXXXXXXXXXXXXXXXXXXXTEFRDLGNPTSPLAAAPGVQQEEVGAAGGGEASAGGDGAYGPDIQAMEEAXXXXXXXXXXXXXXXAAQSPYGMPPHMSMAGMGMGYSPYVHMAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPMHGYGLHAMYGGYPGMMGMPYPFQAHGYPGMPGYGVPGMGSYPSLAAGGGDPTLASSSFGMNGM------AAMQLAAQSMHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------HPXXYHDPNHPQHQQHIDLNQPHEVQSHQLTYHQHHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADDAGXAAGEGCEEQGSAVDGAGTDAVAGGGDGGESSTERDLGADANEAGGSA 2357
MSGSSPISTPTA PPAAA E GPSAT+ XXXXXX PYHLELTPQQQHDADQAAIKA XXXX XXXXXXXXXXXXXXXXXXXX IPGLEDKRAKRGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTGXXXXXXXXXXXXXXXXXXXXXXXXXXXTEF DLGNPTSPLAAAPGVQQEE G+AGGGEASAGGDGAYGPDIQ AHGYPGMPGYG GSYPSLAAGGGDPTLASSSFGMN AAMQLAAQSMHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HPXXYHDPNHPQHQQHIDLNQPHEVQSHQLTYHQHHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DDAG AAG GCEEQGSAV+GAG DAVAG DGGE STERD GADAN AGGSA
Sbjct: 1 MSGSSPISTPTALPPAAA-EREGPSATDQQHXXXXXXXXPYHLELTPQQQHDADQAAIKAAXXXXEAVHXXXXXXXXXXXXXXXXXXXXXIPGLEDKRAKRGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTGXXXXXXXXXXXXXXXXXXXXXXXXXXXTEFGDLGNPTSPLAAAPGVQQEEAGSAGGGEASAGGDGAYGPDIQ---------------------------------------------------------------------------------------------------------------------------------------------AHGYPGMPGYGXXXXGSYPSLAAGGGDPTLASSSFGMNXXXXXXXXAAMQLAAQSMHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPXXYHDPNHPQHQQHIDLNQPHEVQSHQLTYHQHHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XDDAGAAAGVGCEEQGSAVEGAGGDAVAGXXDGGEGSTERDFGADANGAGGSA 588
BLAST of mRNA_E-siliculosus-1a_F_contig106.428.1 vs. uniprot
Match: A0A836CMG7_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG7_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.500e-16 Identity = 49/135 (36.30%), Postives = 84/135 (62.22%), Query Frame = 3 Query: 468 DIPGLEDKRAKRGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSI-KYVELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTG 869
D G++ ++ R +R+TL LE + P+ ++ +GVS T++K+LCR+YGI+RWP+RQIRS+ K + K+++ A+ VD E++ L K+ ++ + A+ G +A +R +I RP ELDA+ L +G
Sbjct: 83 DEHGVKIRQNSREVGQRITLSVLEACYGEPLTAAARRLGVSNTMLKKLCRRYGIQRWPHRQIRSIEKEVQKHMQARAQATSAVDIAACDERIALLQKKRAIVVKTASCGLNASLRSAIFMARPGELDADQLFSSG 217
BLAST of mRNA_E-siliculosus-1a_F_contig106.428.1 vs. uniprot
Match: A0A835Z1M5_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M5_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.030e-14 Identity = 43/114 (37.72%), Postives = 76/114 (66.67%), Query Frame = 3 Query: 519 VTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYV-ELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETL 857
+TL L+ ++ P+ E++K +G+S T++K++CRKYGI+RWP+RQIRS+NKS + + E + +R LQ QL L KK+L+ + A++G + +R ++ PE+L+ + +
Sbjct: 14 ITLELLQSFYNVPLAELAKELGLSLTLLKKICRKYGIQRWPHRQIRSINKSAQELTERINGATSHEERAELQSQLHLLEKKKRLVTRGASSGLQSALRNALFLANPEQLEEDAV 127
BLAST of mRNA_E-siliculosus-1a_F_contig106.428.1 vs. uniprot
Match: A0A835YTG3_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG3_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 5.180e-14 Identity = 41/115 (35.65%), Postives = 79/115 (68.70%), Query Frame = 3 Query: 516 RVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQ-RLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETL 857
++TL L+ Y+ P+ E++K +G+S T++K++CRK+GI+RWP+RQIRS+NK+ + ++ A+ A + ++ QL L KK+L+ + A++G + +R ++ PE+L+ E++
Sbjct: 10 QITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSLNKTAQELKERAQCALTAEEHAEIEAQLQLLEKKKRLVTRGASSGLQSALRNALFLANPEQLEEESV 124
BLAST of mRNA_E-siliculosus-1a_F_contig106.428.1 vs. uniprot
Match: H6WBB7_VAULI (Putative NIN-like transcription factor n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB7_VAULI) HSP 1 Score: 84.3 bits (207), Expect = 2.010e-13 Identity = 41/114 (35.96%), Postives = 73/114 (64.04%), Query Frame = 3 Query: 519 VTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQ-RLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETL 857
+TL L+ Y+ P+ E++K +G+S T++K++CRK+GI+RWP+RQIRS+NK+I+ + + D L+ Q+ L K++L+ + A++G +R +I PE L E++
Sbjct: 14 ITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSINKNIQDLNERINSVNSPDEHAELRNQIGLLEKKRRLVTKGASSGLHTAMRNAIFLANPEHLQEESM 127
BLAST of mRNA_E-siliculosus-1a_F_contig106.428.1 vs. uniprot
Match: A0A2D4BXJ0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXJ0_PYTIN) HSP 1 Score: 83.2 bits (204), Expect = 1.480e-12 Identity = 39/96 (40.62%), Postives = 66/96 (68.75%), Query Frame = 3 Query: 483 EDKRAKRGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLI 770
E R K +K +T+ +L +F+ PI +V+K G+ T++K++CR+ GIKRWP+RQIRS++KSI +E +AQG +R + ++Q++SL K+ +
Sbjct: 151 ESNRVKSLVTKHITIDELRAHFDRPIIDVAKDFGICITLMKKICRRNGIKRWPHRQIRSLSKSIASMEAAMLSAQGPERDKYRDQIISLKLKRDAV 246
BLAST of mRNA_E-siliculosus-1a_F_contig106.428.1 vs. uniprot
Match: G4ZYN2_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZYN2_PHYSP) HSP 1 Score: 82.0 bits (201), Expect = 3.520e-12 Identity = 42/120 (35.00%), Postives = 76/120 (63.33%), Query Frame = 3 Query: 483 EDKRAKRGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKS---ILQMRP 833
E R K +K +++ +L +F+ PI +V+K G+ T++K++CR+ GIKRWP+RQIRS++KSI +E +A G +R++ ++Q+V+L K++ + +S + + S +L RP
Sbjct: 141 ESNRVKSLVTKHISIEELRAHFDRPIIDVAKDFGICITLMKKICRRNGIKRWPHRQIRSLSKSIASMEAAMLSAHGSEREKYRDQIVNLKMKRESVIADPNKDSSMRPKTSPPSLLTPRP 260
BLAST of mRNA_E-siliculosus-1a_F_contig106.428.1 vs. uniprot
Match: A0A024FU44_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FU44_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 5.140e-12 Identity = 37/96 (38.54%), Postives = 67/96 (69.79%), Query Frame = 3 Query: 483 EDKRAKRGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLI 770
E R+K +K+++L +L +F+ PI EV+K G+ T++K++CR+ GIKRWP+RQIRS+ KSI +E +A +++R Q+Q+++L +++ +
Sbjct: 97 ESGRSKNSLTKQISLDELRAHFDRPIIEVAKKFGICITLMKKICRRNGIKRWPHRQIRSLTKSIAALEAAMLSANETEQERYQDQIMNLRRRRESV 192
BLAST of mRNA_E-siliculosus-1a_F_contig106.428.1 vs. uniprot
Match: D0NKH4_PHYIT (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0NKH4_PHYIT) HSP 1 Score: 80.9 bits (198), Expect = 6.530e-12 Identity = 37/96 (38.54%), Postives = 67/96 (69.79%), Query Frame = 3 Query: 483 EDKRAKRGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLI 770
E R K +K +++ +L +F+ PI +V+K G+ T++K++CR+ GIKRWP+RQIRS++KSI +E +A G +R++ ++Q+V+L K++ +
Sbjct: 128 ESNRVKSLVTKHISIEELRAHFDRPIIDVAKDFGICITLMKKICRRNGIKRWPHRQIRSLSKSIASMEAAMLSAHGSEREKYRDQIVNLKMKRESV 223 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig106.428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig106.428.1 >prot_E-siliculosus-1a_F_contig106.428.1 ID=prot_E-siliculosus-1a_F_contig106.428.1|Name=mRNA_E-siliculosus-1a_F_contig106.428.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=720bp MSGSSPISTPTASPPAAAAESVGPSATEQQQQQQQQHAHPYHLELTPQQQback to top mRNA from alignment at E-siliculosus-1a_F_contig106:54078..61977+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig106.428.1 ID=mRNA_E-siliculosus-1a_F_contig106.428.1|Name=mRNA_E-siliculosus-1a_F_contig106.428.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7900bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:54078..61977+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig106:54078..61977+ >mRNA_E-siliculosus-1a_F_contig106.428.1 ID=mRNA_E-siliculosus-1a_F_contig106.428.1|Name=mRNA_E-siliculosus-1a_F_contig106.428.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4320bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:54078..61977+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |