mRNA_E-siliculosus-1a_F_contig106.426.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig106.426.1 vs. uniprot
Match: A0A6H5K5B5_9PHAE (BAH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5B5_9PHAE) HSP 1 Score: 1974 bits (5113), Expect = 0.000e+0 Identity = 1146/1291 (88.77%), Postives = 1181/1291 (91.48%), Query Frame = 3 Query: 234 MSAATFSNTANGGPSSPALSAPEIGGHHAAVAMAVAPXXXXXAAVGPAAGRDDNIVRALAFAEEPTAAILAQTANASSNIKGGSSSTNGGQGGERTAVSVFATEEDPESCVQPSRAAEDRSSGAAVGHHSGGAASATSRSPGVSASSGSTKASWRDRRLAASTTSSANGGRVGIAENGSATAGARGSDARVNRGTAAGSVGAGDESDAGSVDEDNDDYTWFSSEKRVSGGERKHGRGRLGGGRVYDRVRITDHAEEINTLKQQLADGSIEESDGREKLRQLEAKTFTIKIGDTIEIHSGNDAQPFVGKLVLLDRGTRRFRVRWYFVRHEVEAQLAEEMEPKEILLSDCLSSYQLLDTVDRKVDTVQRRPPHAQELPANTYLCYRGYDMKAKMIVPLLEDGSLEKFRRGKPSTKKGQASARGAVSPGASSVAAAHTPPRASTSSSIMSPSNPSQEDNDPSELVLLQRWNRTGPEFDVYVPKWTEPTRTTKPPPEEHTAAQSRFDDCQQWSTQALPFEPHALKEYLARAKAIAPIIPGTIVYIRPRPDGQWGDGKTVKQVRRPNGSGGGRSGVSAGLDTGAGPRLSSMARSTYRWGLVAEPPPPAQKQQLTREQVPSKTEALPVQGAPNIPMMQEPATGSTGVEMPMTPQWFRQQQHHXXXXXXXXYVRFEQQRQQQLMXXXXXXXXXXXXYQRRDHISGDSFRPQLQLPPDSLLQSNLIQQGSKLGSLAAAHPTAAQGVAPASTPRGGGNPHALAPSSVPGDAMAKGGAGAMNEESVVWIASPSEGSSPLQVERSRIVGREFEEEAMNILWDARGQFGVALDIVRSKRYQDDLKRRLKNAGEIWTFQQVKAAVKSCTKLAAERRNEEMGELGDECTDEADYGVASKPFRCVVDFSRRFATLSRFGQNSKRRGTAEAVTVAQGAAATXXXXXXXXXXXPKPGTYNDARPHNKRARAGSSGSDRSCKQEQSYEXXXXXXXXXXXXXXXXXXXXXXXXXGSSVIFVRGXXXXXXXXXXXXXXRKVDVTPTTTT--------RSRKPTSPPLDPSPGVIHDLCSSDEEDEMQELSRKGPAAGSADAPAAGRSPGAAGRGDHEGHQTMAPATAAKVEAAAAARETRGVAAEAAARAEADGADVENGGPXXXXXXXXXXAGMPSACPKEARGGTMSTEREGDGIGVGSDVTPPARDDSPVPGVASGNTGGEAMAPRPQTETGSVLHVFMDRCKATLTPELFDKFVSALSQYREQRLAIGELVDVVGQCFNHLEEREVKLVKEFNSFLPPGHAVKITEA 4082
MSAATFSNTANGGPSSPALSAPEIGGHHAA+AMAVA XXXX GPAAGRDD+IVRALAFAEEPTAA+LAQTANASSNIK GSSST+GGQGGE T VSVFA EDPESC+QPSRAAED SSG AV HH+GGAASATSRSPG+SASSGST+ASW DRRLAASTTSSANGGRV IAEN SATA ARG DA+VNR TAAGSVGAGDESDAGSVDEDNDDYTWFSSEKRVSGGERKHGRGRLGGGRVYDRVRITDHAEEINTLKQQLADGSIEESDGREKLR+LEAKTFTIKIGDTIEIHSGNDAQPFVGKLVLLDRGTRRFRVRWYFVRHEV+AQLAE+MEPKEILLSDCLSSYQLLDTVDRKVDTV+ RPPHAQELPANTYLCYRGYDMKAKMIVPLLEDGSLEKFRRGKPST+KGQAS+RGAVSPGASS AAAHTPPRASTSSSIMSPSNPSQEDNDPSELVLLQRWNRTGPEFDVYVPKWTEPTR TKPPPEE+ AQSRFDDCQQWST+ALPFEP ALK+YLARAKAIAPIIPGTIVYIRPRPDGQWGDGKTVKQVRRPNGSGG RS VSAGLDTGAGPRL+SMARSTYRWGLVAEPPPPAQKQQLTREQVPS+TEAL VQGAPNIPMMQEPATG+TGV+M MTPQWFR+QQ +VRFE+QRQ QLMXXXXXXXXXXXXY RRDHISGDSFRPQLQLPP+SLLQSNLIQQGS LG LA AH AAQ VAPAS PRGGGNPHALAPSSVPGDAMAK AGA NEESVVWIASPSEGSSPLQVERSRIV REFEEEAMNILWDARGQFGVALDIV+SKRYQDDLKRRLKNAGEIWTFQQVKAAVK+CTKLAAERRNEEMGELGDECTDEADYGVASKPFRCVVDFSRRFATLSRFGQN+KRRGTAEA TVAQG AAT PKPGTYNDARPH KRARAGSSGSDRSCKQEQSYEXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX RSRKPTSPPLDPS GVIHDLCSSDEED++ +LSRKGPAAGSADAP+AGRSPGA GRGDHEGHQ MAP TAAKVEAAAAARETRGVA EAAARAEADG DVENGGP XXXXXXXXXAGMPSACPKEA GGTMSTEREGDG GVGSD PPARDDSPVPGVASGNTGGEAMAPRPQ ETGSVLHVFMDRCKATLTPE FDKFVSALSQYREQRL+IGELVDVVGQCFNH EEREVKLVKEFNSFLPPG+AVKIT A
Sbjct: 1 MSAATFSNTANGGPSSPALSAPEIGGHHAAMAMAVAAAXXXXXXXGPAAGRDDDIVRALAFAEEPTAAVLAQTANASSNIKVGSSSTDGGQGGESTDVSVFAKAEDPESCLQPSRAAEDSSSGTAVRHHTGGAASATSRSPGLSASSGSTQASWHDRRLAASTTSSANGGRVEIAENRSATASARGLDAQVNRETAAGSVGAGDESDAGSVDEDNDDYTWFSSEKRVSGGERKHGRGRLGGGRVYDRVRITDHAEEINTLKQQLADGSIEESDGREKLRELEAKTFTIKIGDTIEIHSGNDAQPFVGKLVLLDRGTRRFRVRWYFVRHEVDAQLAEDMEPKEILLSDCLSSYQLLDTVDRKVDTVRTRPPHAQELPANTYLCYRGYDMKAKMIVPLLEDGSLEKFRRGKPSTRKGQASSRGAVSPGASSAAAAHTPPRASTSSSIMSPSNPSQEDNDPSELVLLQRWNRTGPEFDVYVPKWTEPTRRTKPPPEEYKVAQSRFDDCQQWSTEALPFEPDALKDYLARAKAIAPIIPGTIVYIRPRPDGQWGDGKTVKQVRRPNGSGGARSVVSAGLDTGAGPRLTSMARSTYRWGLVAEPPPPAQKQQLTREQVPSRTEALLVQGAPNIPMMQEPATGNTGVDMQMTPQWFREQQQQQQ------HVRFEEQRQXQLMXXXXXXXXXXXXYHRRDHISGDSFRPQLQLPPNSLLQSNLIQQGSNLGGLAGAHAMAAQEVAPASKPRGGGNPHALAPSSVPGDAMAKE-AGATNEESVVWIASPSEGSSPLQVERSRIVRREFEEEAMNILWDARGQFGVALDIVKSKRYQDDLKRRLKNAGEIWTFQQVKAAVKTCTKLAAERRNEEMGELGDECTDEADYGVASKPFRCVVDFSRRFATLSRFGQNTKRRGTAEAATVAQGVAATASTTAKRQR--PKPGTYNDARPHKKRARAGSSGSDRSCKQEQSYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRKPTSPPLDPSLGVIHDLCSSDEEDDIHDLSRKGPAAGSADAPSAGRSPGAGGRGDHEGHQAMAPETAAKVEAAAAARETRGVAVEAAARAEADGVDVENGGPAXXXXXXXXXAGMPSACPKEACGGTMSTEREGDGSGVGSDAPPPARDDSPVPGVASGNTGGEAMAPRPQAETGSVLHVFMDRCKATLTPERFDKFVSALSQYREQRLSIGELVDVVGQCFNHHEEREVKLVKEFNSFLPPGNAVKITRA 1282 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig106.426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig106.426.1 >prot_E-siliculosus-1a_F_contig106.426.1 ID=prot_E-siliculosus-1a_F_contig106.426.1|Name=mRNA_E-siliculosus-1a_F_contig106.426.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1290bp MHTDDKMSAATFSNTANGGPSSPALSAPEIGGHHAAVAMAVAPAPSPAAAback to top mRNA from alignment at E-siliculosus-1a_F_contig106:28614..46435+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig106.426.1 ID=mRNA_E-siliculosus-1a_F_contig106.426.1|Name=mRNA_E-siliculosus-1a_F_contig106.426.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=17822bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:28614..46435+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig106:28614..46435+ >mRNA_E-siliculosus-1a_F_contig106.426.1 ID=mRNA_E-siliculosus-1a_F_contig106.426.1|Name=mRNA_E-siliculosus-1a_F_contig106.426.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=7740bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:28614..46435+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |