mRNA_E-siliculosus-1a_F_contig10591.423.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 1.360e-15 Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1 Query: 1 HFFNTSHIFITFQGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRA 147
H NT H+FITFQGKYEEAGPLYERSLAIREK LGPDHP VA +LNNRA
Sbjct: 786 HSSNTHHVFITFQGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRA 834
BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5JPL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL8_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.140e-10 Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1 Query: 13 TSHIFITFQGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLES 162
+S + +TFQGK EEAG L+ RSLAIREKALGPDHP VAT+LNN + LLES
Sbjct: 72 SSRLPVTFQGKPEEAGALFNRSLAIREKALGPDHPDVATSLNNLSCLLES 121
BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528) HSP 1 Score: 65.5 bits (158), Expect = 1.920e-10 Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 Query: 37 QGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGL 153
QGKYEEA PLY+R+L IRE LGPDHP+VAT LNN AGL
Sbjct: 4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 2.360e-10 Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 1 Query: 10 NTSHIFITFQGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLES 162
N + + QGKY+EAG LYERSLAIREKALGPDHP VA +LNN A LLES
Sbjct: 822 NNRALLLKAQGKYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWAVLLES 872
BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 8.220e-10 Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1 Query: 25 FITFQGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLES 162
F+ FQGKY++AGPLY+RSLAI EK GPDHP VA +LNNRA LL +
Sbjct: 412 FLIFQGKYDQAGPLYDRSLAILEKVHGPDHPDVAQSLNNRAELLRA 457
BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.390e-9 Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 1 Query: 37 QGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLE 159
QG Y EA PLYERS AIR+K LGPDHP VAT LNNRAGLL+
Sbjct: 205 QGNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLLK 245
BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: D8LCT1_ECTSI (Tetratricopeptide repeat family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT1_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 2.200e-9 Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 Query: 37 QGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLES 162
QG Y+EAG LYERSLAIREKALGP+HPA AT L N+AGLL +
Sbjct: 4 QGNYKEAGRLYERSLAIREKALGPEHPAFATTLTNQAGLLRN 45
BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5KWM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM2_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 2.310e-9 Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 Query: 37 QGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLES 162
QG Y++AG LY+RSLAIREK LGPDHP VA +LNNRAGLL +
Sbjct: 129 QGNYDQAGMLYKRSLAIREKVLGPDHPNVAQSLNNRAGLLSA 170
BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: A0A6H5J6Q8_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q8_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 2.940e-9 Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 1 Query: 16 SHIFITFQGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLL 156
+H++++FQGK +EAGPLY+R++ I E ALGP+H VATALNNRA LL
Sbjct: 574 THLYVSFQGKLDEAGPLYDRAIRIWEAALGPEHSQVATALNNRARLL 620
BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 3.380e-9 Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1 Query: 37 QGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGLLE 159
QGKY EA PLYERSLAI+EK LGP+HP VAT+L+NRA LLE
Sbjct: 693 QGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLE 733 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10591.423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10591.423.1 >prot_E-siliculosus-1a_F_contig10591.423.1 ID=prot_E-siliculosus-1a_F_contig10591.423.1|Name=mRNA_E-siliculosus-1a_F_contig10591.423.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=257bp HFFNTSHIFITFQGKYEEAGPLYERSLAIREKALGPDHPAVATALNNRAGback to top mRNA from alignment at E-siliculosus-1a_F_contig10591:897..2227- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10591.423.1 ID=mRNA_E-siliculosus-1a_F_contig10591.423.1|Name=mRNA_E-siliculosus-1a_F_contig10591.423.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1331bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10591:897..2227- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10591:897..2227- >mRNA_E-siliculosus-1a_F_contig10591.423.1 ID=mRNA_E-siliculosus-1a_F_contig10591.423.1|Name=mRNA_E-siliculosus-1a_F_contig10591.423.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1542bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10591:897..2227- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |