mRNA_E-siliculosus-1a_F_contig10589.419.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10589.419.1 vs. uniprot
Match: D7G0A4_ECTSI (Rab8A, RAB family GTPase n=2 Tax=Phaeophyceae TaxID=2870 RepID=D7G0A4_ECTSI) HSP 1 Score: 293 bits (751), Expect = 1.160e-99 Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 1 Query: 1 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNQGSRATGNVNLNAQASKKKTGCC 450 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPN GSRA GNVNLNAQASKKKTGCC Sbjct: 56 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNPGSRAAGNVNLNAQASKKKTGCC 205
BLAST of mRNA_E-siliculosus-1a_F_contig10589.419.1 vs. uniprot
Match: A0A6H5KYQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ5_9PHAE) HSP 1 Score: 290 bits (742), Expect = 9.360e-99 Identity = 146/150 (97.33%), Postives = 148/150 (98.67%), Query Frame = 1 Query: 1 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNQGSRATGNVNLNAQASKKKTGCC 450 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSF+SIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPN GSRA+GNVNLNAQASKKK GCC Sbjct: 25 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFSSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNPGSRASGNVNLNAQASKKKAGCC 174
BLAST of mRNA_E-siliculosus-1a_F_contig10589.419.1 vs. uniprot
Match: A0A836CCB2_9STRA (Rab8A, rab family GTPase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCB2_9STRA) HSP 1 Score: 251 bits (642), Expect = 4.770e-83 Identity = 128/151 (84.77%), Postives = 138/151 (91.39%), Query Frame = 1 Query: 1 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNQGSRATGNVNLNAQASK-KKTGCC 450 D+KR+KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSF SIRNWVAQIQQHADV VNKILIGNKCD+D +REVS EEGAQLAAEYGIQFFETSAKNDINVEKGFIT+AREVK+RLMADG +QG+R GNV L+A A KK+ CC Sbjct: 56 DTKRVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFQSIRNWVAQIQQHADVHVNKILIGNKCDIDNEREVSTEEGAQLAAEYGIQFFETSAKNDINVEKGFITVAREVKNRLMADGGSQGARTQGNVALSAPAKGGKKSSCC 206
BLAST of mRNA_E-siliculosus-1a_F_contig10589.419.1 vs. uniprot
Match: A0A7S2V1J6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1J6_9STRA) HSP 1 Score: 219 bits (558), Expect = 2.010e-70 Identity = 113/152 (74.34%), Postives = 125/152 (82.24%), Query Frame = 1 Query: 1 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNQGSRATGN--VNLNAQASKKKTGCC 450 D KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+KSFNSIRNW++QIQQHADV VNKIL GNKCDM E+R V+ EEG +LA+EYGI FFE SAKND+NVE F+TIAREVKDRL+ D G+ A G VNL KK+GCC Sbjct: 47 DGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRKSFNSIRNWISQIQQHADVHVNKILCGNKCDMSEERAVTTEEGQKLASEYGIGFFEASAKNDVNVETSFVTIAREVKDRLLLD---VGTMARGGERVNLGNAKPAKKSGCC 195
BLAST of mRNA_E-siliculosus-1a_F_contig10589.419.1 vs. uniprot
Match: K3WPX9_GLOUD (Uncharacterized protein n=28 Tax=Oomycota TaxID=4762 RepID=K3WPX9_GLOUD) HSP 1 Score: 219 bits (557), Expect = 3.580e-70 Identity = 111/150 (74.00%), Postives = 125/150 (83.33%), Query Frame = 1 Query: 1 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNQGSRATGNVNLNAQASKKKTGCC 450 D+K++KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SF SIRNWV QIQQHADV VNKILIGNKCDM +D+ VS EEG LA EYG++FFETSAKN+INVE GFI IAREVK+RLM +G G NVNL+A+ + K GCC Sbjct: 56 DNKKVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRASFQSIRNWVGQIQQHADVHVNKILIGNKCDMTDDKVVSTEEGQALADEYGVKFFETSAKNNINVESGFIEIAREVKNRLMEEG---GPHKKENVNLSAKPAAPKKGCC 202
BLAST of mRNA_E-siliculosus-1a_F_contig10589.419.1 vs. uniprot
Match: A0A4D9D279_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D279_9STRA) HSP 1 Score: 214 bits (544), Expect = 3.510e-68 Identity = 111/151 (73.51%), Postives = 124/151 (82.12%), Query Frame = 1 Query: 1 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNQGSRATGNVNL-NAQASKKKTGCC 450 D +RIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNWV QIQQHADV VNKILIGNKCDM R VS EEG LA ++GIQFFETSAKNDINVEK F+TIAREVK+R++ DG G RATG + +A+ S + CC Sbjct: 56 DGRRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVGQIQQHADVHVNKILIGNKCDMTPQRVVSTEEGQSLANDFGIQFFETSAKNDINVEKSFVTIAREVKNRMLVDG---GPRATGGKAIVDAKRSNEAKKCC 203
BLAST of mRNA_E-siliculosus-1a_F_contig10589.419.1 vs. uniprot
Match: A0A7S4M6F2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M6F2_9STRA) HSP 1 Score: 213 bits (543), Expect = 5.480e-68 Identity = 110/152 (72.37%), Postives = 128/152 (84.21%), Query Frame = 1 Query: 1 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNQGSRATGNVNLN--AQASKKKTGCC 450 D KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNWV+QIQQHADV VNKIL+GNKCDM +++ VS EEGA+LA E+GI+F+E SAKNDINVE+ FI IAR+VKDRL+ADG G A ++LN Q S++ GCC Sbjct: 56 DGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWVSQIQQHADVHVNKILVGNKCDMLDEKVVSTEEGAKLAKEFGIEFWECSAKNDINVEQAFIGIARDVKDRLVADGGG-GPAANKGLSLNKPGQGSQRNRGCC 206
BLAST of mRNA_E-siliculosus-1a_F_contig10589.419.1 vs. uniprot
Match: A0A6T5Q365_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5Q365_HETAK) HSP 1 Score: 213 bits (542), Expect = 7.780e-68 Identity = 109/147 (74.15%), Postives = 122/147 (82.99%), Query Frame = 1 Query: 1 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNQGSRATGNVNLNAQASKKKT 441 D KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SFNSIRNWV+QIQQHADV VNKILIGNKCDM ++R V+ EEG +LAAEYGIQFFETSAKNDI VE+ F+T+AREVK+RL+ D + VNL Q S K+ Sbjct: 56 DGKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRNSFNSIRNWVSQIQQHADVHVNKILIGNKCDMKDERVVTTEEGQKLAAEYGIQFFETSAKNDIQVEESFVTVAREVKERLINDVDR---KTDARVNLQTQKSSSKS 199
BLAST of mRNA_E-siliculosus-1a_F_contig10589.419.1 vs. uniprot
Match: A0A7S2RB79_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RB79_9STRA) HSP 1 Score: 212 bits (540), Expect = 1.420e-67 Identity = 110/150 (73.33%), Postives = 125/150 (83.33%), Query Frame = 1 Query: 1 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNQGSRATGNVNLNAQASKKKTGCC 450 D+KRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD+ SF SIRNWV+QIQQHADV VNKILIGNKCDM++ R VS +EG +LA EYGIQFFETSAKNDI V+ GF+ IAREVK+RL+ADGP + +G N + Q +K K C Sbjct: 55 DNKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRTSFTSIRNWVSQIQQHADVHVNKILIGNKCDMEDQRMVSFDEGKKLAQEYGIQFFETSAKNDIEVDSGFVAIAREVKNRLIADGPT--AVRSGIHNPSHQNNKSKGRAC 202
BLAST of mRNA_E-siliculosus-1a_F_contig10589.419.1 vs. uniprot
Match: A0A6U3X2X0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3X2X0_9STRA) HSP 1 Score: 210 bits (535), Expect = 9.020e-67 Identity = 105/150 (70.00%), Postives = 121/150 (80.67%), Query Frame = 1 Query: 1 DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWVAQIQQHADVAVNKILIGNKCDMDEDREVSREEGAQLAAEYGIQFFETSAKNDINVEKGFITIAREVKDRLMADGPNQGSRATGNVNLNAQASKKKTGCC 450 D KR+KLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTD++SF SIRNW++QIQQHADV VNKIL+GNKCDM ++ VS EEG +LA E+GI F+E SAKNDINVE+ FI+IAR+VKDRL+ DG G VNL + K GCC Sbjct: 59 DGKRVKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDRRSFESIRNWISQIQQHADVHVNKILVGNKCDMLHEKVVSTEEGQKLAKEFGIDFWECSAKNDINVEQSFISIARDVKDRLVTDGG--GGPTNSRVNLKSPQGSTKKGCC 206 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10589.419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10589.419.1 >prot_E-siliculosus-1a_F_contig10589.419.1 ID=prot_E-siliculosus-1a_F_contig10589.419.1|Name=mRNA_E-siliculosus-1a_F_contig10589.419.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=151bp DSKRIKLQIWDTAGQERFRTITTSYFRGAQGILLVYDVTDKKSFNSIRNWback to top mRNA from alignment at E-siliculosus-1a_F_contig10589:123..2310+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10589.419.1 ID=mRNA_E-siliculosus-1a_F_contig10589.419.1|Name=mRNA_E-siliculosus-1a_F_contig10589.419.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2188bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10589:123..2310+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10589:123..2310+ >mRNA_E-siliculosus-1a_F_contig10589.419.1 ID=mRNA_E-siliculosus-1a_F_contig10589.419.1|Name=mRNA_E-siliculosus-1a_F_contig10589.419.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10589:123..2310+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |