mRNA_E-siliculosus-1a_F_contig10587.418.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10587.418.1 vs. uniprot
Match: D8LLQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI) HSP 1 Score: 279 bits (713), Expect = 9.400e-84 Identity = 148/184 (80.43%), Postives = 152/184 (82.61%), Query Frame = 1 Query: 4 DTAEIFNSHGELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYGVSTLRFSETSVIVDAAPTDTDTYDNGSDDSNSN----------RGTSQSPTGPLASAMDNNDNVVHGDANAGVKDITSGGQAYTNVISRTPGFPDEDELDKLPMRDLGSCDELHLDRTPLDGRVFVMGHIVCHEKR 525
DTAEIFN GELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYGVSTLRFSETSVIVD APTDT+TYDNGS RGTSQSPTGPL+SAMDNN NVVHGDANAGV DIT Q YT+VISRTPGFP EDELDKLPMR LGSCDEL LDRTPLDGRVF+ G IVC KR
Sbjct: 329 DTAEIFNVDGELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYGVSTLRFSETSVIVDVAPTDTNTYDNGSXXXXXXXXXXXXXXXXRGTSQSPTGPLSSAMDNNHNVVHGDANAGVTDITPVRQTYTDVISRTPGFPGEDELDKLPMRGLGSCDELPLDRTPLDGRVFITGDIVCDVKR 512
BLAST of mRNA_E-siliculosus-1a_F_contig10587.418.1 vs. uniprot
Match: A0A6H5JIS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS5_9PHAE) HSP 1 Score: 259 bits (663), Expect = 2.350e-82 Identity = 139/189 (73.54%), Postives = 149/189 (78.84%), Query Frame = 1 Query: 4 DTAEIFNSHGELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYGVSTLRFSETSVIVDAAPTDTDTYDNGSDDSNSN---------------RGTSQSPTGPLASAMDNNDNVVHGDANAGVKDITSGGQAYTNVISRTPGFPDEDELDKLPMRDLGSCDELHLDRTPLDGRVFVMGHIVCHEKR 525
DTAEIF GELHLR DQHRFDDLVNTRT+DPHDT RGSPDGDIIT+G S LRFSETSVIVDAA TDTDTYDNG D+ RGTSQSPTGPL+SAMDNN NVVHGDANAGV DIT G Q YTNVISRT GFPD+DELDKLPMRDLG EL LDR+PL GRVF++G IVCH+K+
Sbjct: 16 DTAEIFTVDGELHLRADQHRFDDLVNTRTNDPHDTSRGSPDGDIITHGGSMLRFSETSVIVDAAATDTDTYDNGIDNXXXXXXXXXXXXXXXXXXXRGTSQSPTGPLSSAMDNNHNVVHGDANAGVTDITPGRQTYTNVISRTTGFPDDDELDKLPMRDLGPRGELPLDRSPLHGRVFIIGDIVCHKKQ 204
BLAST of mRNA_E-siliculosus-1a_F_contig10587.418.1 vs. uniprot
Match: D8LLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ5_ECTSI) HSP 1 Score: 128 bits (322), Expect = 3.630e-31 Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 1 Query: 4 DTAEIFNSHGELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYGVSTLRFSETSVIVDAAPTDTDTYD 219
D+ EIFN HGELHLRGDQHRFDDLV+TR DDPHDTI GSPDGDIITYG S LRFSETSVIVDAAPTDT+TYD
Sbjct: 327 DSVEIFNLHGELHLRGDQHRFDDLVDTRMDDPHDTIHGSPDGDIITYGGSMLRFSETSVIVDAAPTDTNTYD 398
BLAST of mRNA_E-siliculosus-1a_F_contig10587.418.1 vs. uniprot
Match: D8LLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI) HSP 1 Score: 127 bits (320), Expect = 6.680e-31 Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 1 Query: 4 DTAEIFNSHGELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYGVSTLRFSETSVIVDAAPTDTDT 213
D+ EIFN HGELHLRGDQHRFDDLV+TRTDDPHDTI GSPDGDIITYG S LRFSETSVIVDAAPTDTDT
Sbjct: 325 DSVEIFNLHGELHLRGDQHRFDDLVDTRTDDPHDTIHGSPDGDIITYGGSMLRFSETSVIVDAAPTDTDT 394
BLAST of mRNA_E-siliculosus-1a_F_contig10587.418.1 vs. uniprot
Match: A0A6H5L4D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D7_9PHAE) HSP 1 Score: 114 bits (285), Expect = 3.750e-29 Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 1 Query: 4 DTAEIFNSHGELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYGVSTLRFSETSVI 183
DTAEIFN +GELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYG S LRFSETSVI
Sbjct: 16 DTAEIFNVNGELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYGGSMLRFSETSVI 75
BLAST of mRNA_E-siliculosus-1a_F_contig10587.418.1 vs. uniprot
Match: A0A6H5L8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.070e-20 Identity = 57/100 (57.00%), Postives = 68/100 (68.00%), Query Frame = 1 Query: 232 DSNSNRGTSQSPTGPLASAMDNNDNVVH-GDANAGVKDITSGG-QAYTNVISRTPGFPDEDELDKLPMRDLGSCDELHLDRTPLDGRVFVMGHIVCHEKR 525
D+ NRGT QS ++A D+N N G+A+AGV D+TSGG AY+N IS TP F D+ E DKLP R+LGSCDEL LDR P GRVF+ G IVC KR
Sbjct: 743 DNEDNRGTCQSTVEHPSTATDDNHNAAAPGNADAGVIDVTSGGGHAYSNSISTTPRFHDDAEWDKLPRRNLGSCDELALDRNPPHGRVFITGDIVCDVKR 842
BLAST of mRNA_E-siliculosus-1a_F_contig10587.418.1 vs. uniprot
Match: D7G9G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G6_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 4.350e-11 Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1 Query: 358 QAYTNVISRTPGFPDEDELDKLPMRDLGSCDELHLDRTPLDGRVFVMGHIVCHEKR 525
+AYT I RT +PD +++LP+R LGSCDEL LDR LDG V+V G IVC EKR
Sbjct: 439 EAYTPFIPRTKVYPDASYINRLPIRSLGSCDELPLDRNRLDGAVYVTGPIVCDEKR 494
BLAST of mRNA_E-siliculosus-1a_F_contig10587.418.1 vs. uniprot
Match: A0A6H5L206_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L206_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 4.510e-7 Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 1 Query: 4 DTAEIFNSHGELHLRGDQHRFDDLVNTRT 90
DTAEIFN +GELHLRGDQHRFDDLVNTRT
Sbjct: 337 DTAEIFNVNGELHLRGDQHRFDDLVNTRT 365 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10587.418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10587.418.1 >prot_E-siliculosus-1a_F_contig10587.418.1 ID=prot_E-siliculosus-1a_F_contig10587.418.1|Name=mRNA_E-siliculosus-1a_F_contig10587.418.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=175bp DDTAEIFNSHGELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYGVback to top mRNA from alignment at E-siliculosus-1a_F_contig10587:390..1771+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10587.418.1 ID=mRNA_E-siliculosus-1a_F_contig10587.418.1|Name=mRNA_E-siliculosus-1a_F_contig10587.418.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1382bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10587:390..1771+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10587:390..1771+ >mRNA_E-siliculosus-1a_F_contig10587.418.1 ID=mRNA_E-siliculosus-1a_F_contig10587.418.1|Name=mRNA_E-siliculosus-1a_F_contig10587.418.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10587:390..1771+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |