mRNA_E-siliculosus-1a_F_contig1057.410.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1057.410.1 vs. uniprot
Match: D8LN52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN52_ECTSI) HSP 1 Score: 905 bits (2338), Expect = 0.000e+0 Identity = 445/450 (98.89%), Postives = 449/450 (99.78%), Query Frame = 1 Query: 103 MNKATWVIAIDIACEFVPFTDILSDVILLIAVWPRTAVIAPDDVEGCGERALWYLALSFTVVGTLVDLFPEMLLVSEIALHPSALTSPGSMGTLLRLVFSDGKPVVVFAATEEFEKPLAPPLLAIRDSLRRRLSSVATAFFLRDGCGASSPKWTYAGLVGVLVGGELLTAIGACLFLRIEFGWPALISLLASLLALLISVRCHMRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSEESLWANPWDWFRVAVPSLSRSDNDSPLSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAEDWSAHSWGVYFSSQQSPFSVWSSRLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIAVLIGHAARKKNIFKPLNEAAGPAVADRW 1452
MNKATWVIAIDIACEFVPFTDILSDVILLIAVWPRTAVIAPDDVEGCGERALWYLALSFTVVGTLVDLFPEMLLVSEIALHPS LTSPGSMGTLLRLVFSDGKPVVVFAATEEFEKPLAPPLLAIRDSLRRRLSSVATAFFLRDGCGASSPKWTYAGLVGVLVGGELLTAIGACLFLRIEFGWPALISLLASLLALLISVRCHMRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSE+SLWANPWDWFRVAVPSLSRSDNDSPLSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAEDWSAHSWGVYFSSQ+SPFSVWS+RLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIAVLIGHAARKKN+FKPLNEAAGPAVADRW
Sbjct: 1 MNKATWVIAIDIACEFVPFTDILSDVILLIAVWPRTAVIAPDDVEGCGERALWYLALSFTVVGTLVDLFPEMLLVSEIALHPSVLTSPGSMGTLLRLVFSDGKPVVVFAATEEFEKPLAPPLLAIRDSLRRRLSSVATAFFLRDGCGASSPKWTYAGLVGVLVGGELLTAIGACLFLRIEFGWPALISLLASLLALLISVRCHMRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSEDSLWANPWDWFRVAVPSLSRSDNDSPLSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAEDWSAHSWGVYFSSQESPFSVWSARLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIAVLIGHAARKKNMFKPLNEAAGPAVADRW 450
BLAST of mRNA_E-siliculosus-1a_F_contig1057.410.1 vs. uniprot
Match: A0A6H5JN14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN14_9PHAE) HSP 1 Score: 682 bits (1761), Expect = 2.460e-245 Identity = 336/341 (98.53%), Postives = 337/341 (98.83%), Query Frame = 1 Query: 103 MNKATWVIAIDIACEFVPFTDILSDVILLIAVWPRTAVIAPDDVEGCGERALWYLALSFTVVGTLVDLFPEMLLVSEIALHPSALTSPGSMGTLLRLVFSDGKPVVVFAATEEFEKPLAPPLLAIRDSLRRRLSSVATAFFLRDGCGASSPKWTYAGLVGVLVGGELLTAIGACLFLRIEFGWPALISLLASLLALLISVRCHMRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSEESLWANPWDWFRVAVPSLSRSDNDSPLSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAE 1125
MNK TWVIAIDIACEFVPFTDILSDVILLIAVWPRTAVIAPDDVEGCGERALWYLALSFTVVGTLVDLFPEMLLVSEIALHPS LTSPGSMGTLLRLVFSDGKPVVVFAATEEFEKPLAPPLLAIRDSLRRRLSSVATAFFL DGCGASSPKWTYAGLVGVLVGGELLTAIGACLFLRIEFGWPALISLLASLLALLISVRCHMRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPS ESLWANPWDWFRVAVPSLSRSDNDSP+SYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAE
Sbjct: 1 MNKTTWVIAIDIACEFVPFTDILSDVILLIAVWPRTAVIAPDDVEGCGERALWYLALSFTVVGTLVDLFPEMLLVSEIALHPSVLTSPGSMGTLLRLVFSDGKPVVVFAATEEFEKPLAPPLLAIRDSLRRRLSSVATAFFLGDGCGASSPKWTYAGLVGVLVGGELLTAIGACLFLRIEFGWPALISLLASLLALLISVRCHMRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSGESLWANPWDWFRVAVPSLSRSDNDSPMSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAE 341
BLAST of mRNA_E-siliculosus-1a_F_contig1057.410.1 vs. uniprot
Match: A0A6H5JNH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH5_9PHAE) HSP 1 Score: 214 bits (544), Expect = 1.670e-64 Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 1 Query: 1123 EDWSAHSWGVYFSSQQSPFSVWSSRLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIAVLIGHAARKKNIFKPLNEAAGPAVADRW 1452
EDWSAHSWGVYFSSQ+SPFSVWS RLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWI VLIGHAARKKNIFKPLN+AA AVADRW
Sbjct: 10 EDWSAHSWGVYFSSQESPFSVWSWRLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIVVLIGHAARKKNIFKPLNDAASAAVADRW 119 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1057.410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1057.410.1 >prot_E-siliculosus-1a_F_contig1057.410.1 ID=prot_E-siliculosus-1a_F_contig1057.410.1|Name=mRNA_E-siliculosus-1a_F_contig1057.410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=451bp MNKATWVIAIDIACEFVPFTDILSDVILLIAVWPRTAVIAPDDVEGCGERback to top mRNA from alignment at E-siliculosus-1a_F_contig1057:10587..16194+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1057.410.1 ID=mRNA_E-siliculosus-1a_F_contig1057.410.1|Name=mRNA_E-siliculosus-1a_F_contig1057.410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5608bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1057:10587..16194+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1057:10587..16194+ >mRNA_E-siliculosus-1a_F_contig1057.410.1 ID=mRNA_E-siliculosus-1a_F_contig1057.410.1|Name=mRNA_E-siliculosus-1a_F_contig1057.410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2706bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1057:10587..16194+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |