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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10566.408.1 vs. uniprot
Match: D8LJ33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ33_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 1.590e-9 Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1 Query: 46 GWSESKTAVGEIFYVNHKEKKTTWVRPK 129
GWSESKTA GEIFYVNHKEKKTTWVRPK
Sbjct: 269 GWSESKTAGGEIFYVNHKEKKTTWVRPK 296
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 129 |
| Model size | 129 |
| Exons | 1 |
| Hectar predicted targeting category | signal peptide |
| BRITE | ko00000,ko00001,ko03036 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | S |
| EggNOG OGs | COG5021@1,COG5271@1,KOG0940@2759,KOG1808@2759 |
| EggNOG free text desc. | ATPase activity |
| GOs | GO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047 |
| KEGG Pathway | ko04934,map04934 |
| KEGG ko | ko:K14961,ko:K19868 |
| Seed eggNOG ortholog | 2880.D8LJ33 |
| Seed ortholog evalue | 6e-08 |
| Seed ortholog score | 62.4 |
| Taxonomic scope | Eukaryota |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927558.3393378-CDS-E-siliculosus-1a_F_contig10566:373..502 | 1622927558.3393378-CDS-E-siliculosus-1a_F_contig10566:373..502 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10566 374..502 - |
| 1696318585.202685-CDS-E-siliculosus-1a_F_contig10566:373..502 | 1696318585.202685-CDS-E-siliculosus-1a_F_contig10566:373..502 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10566 374..502 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10566.408.1 >prot_E-siliculosus-1a_F_contig10566.408.1 ID=prot_E-siliculosus-1a_F_contig10566.408.1|Name=mRNA_E-siliculosus-1a_F_contig10566.408.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=43bp
PLPPIHLLLCFLPSAGWSESKTAVGEIFYVNHKEKKTTWVRPK back to topmRNA from alignment at E-siliculosus-1a_F_contig10566:374..502- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10566.408.1 ID=mRNA_E-siliculosus-1a_F_contig10566.408.1|Name=mRNA_E-siliculosus-1a_F_contig10566.408.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=129bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10566:374..502- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCTTCCGCCAATACATCTACTGCTCTGCTTCCTTCCTTCTGCAGGGTG
GAGCGAGAGCAAGACCGCGGTCGGCGAGATCTTCTACGTCAACCACAAGG
AGAAGAAGACGACCTGGGTCAGACCGAAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10566:374..502- >mRNA_E-siliculosus-1a_F_contig10566.408.1 ID=mRNA_E-siliculosus-1a_F_contig10566.408.1|Name=mRNA_E-siliculosus-1a_F_contig10566.408.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10566:374..502- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCTTCCGCCAATACATCTACTGCTCTGCTTCCTTCCTTCTGCAGGGTG
GAGCGAGAGCAAGACCGCGGTCGGCGAGATCTTCTACGTCAACCACAAGG
AGAAGAAGACGACCTGGGTCAGACCGAAACCCCTTCCGCCAATACATCTA
CTGCTCTGCTTCCTTCCTTCTGCAGGGTGGAGCGAGAGCAAGACCGCGGT
CGGCGAGATCTTCTACGTCAACCACAAGGAGAAGAAGACGACCTGGGTCA
GACCGAAA back to top
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