mRNA_E-siliculosus-1a_F_contig10561.407.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10561.407.1 vs. uniprot
Match: D7FLX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX1_ECTSI) HSP 1 Score: 260 bits (665), Expect = 1.070e-87 Identity = 130/136 (95.59%), Postives = 133/136 (97.79%), Query Frame = 1 Query: 1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVSSRCFW 408 MDDLKYALGFVC+FSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQ+ R F+ Sbjct: 1 MDDLKYALGFVCIFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQLQRRSFY 136
BLAST of mRNA_E-siliculosus-1a_F_contig10561.407.1 vs. uniprot
Match: A0A835ZE95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE95_9STRA) HSP 1 Score: 155 bits (393), Expect = 2.910e-45 Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 1 Query: 1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVS 393 +DDLKYALG V FS +AV G +GGN GAS TY FA++PI+FLGIGS++PG+I A IN + + +++ RRV HEAAHFL+GYLCGLPIKSY DG TT +EF+D+AEGD + + T E+D VS Sbjct: 3 LDDLKYALGAVVAFSAISAVASGVIVGGNTGASLTYLFAIIPILFLGIGSSSPGIIVAAINLFKIRFDSEFQSRRVHHEAAHFLAGYLCGLPIKSYTVDGATTQIEFFDTAEGDQAVIGRQLTRPEIDPVS 133
BLAST of mRNA_E-siliculosus-1a_F_contig10561.407.1 vs. uniprot
Match: A0A7S2V1Y0_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y0_9STRA) HSP 1 Score: 142 bits (357), Expect = 3.810e-38 Identity = 73/129 (56.59%), Postives = 97/129 (75.19%), Query Frame = 1 Query: 1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGD--MSGRAMKFTPEEV 381 +DDLK+++ +V + SFA AV G IGGNVGA+ TY FA++PI+FLG+GSTAPG+I+A I+ V+ ++ ++ERRVRHEAAHFL GYL G PIKSYKA G T VEFYDS +GD ++ + T E+V Sbjct: 167 LDDLKFSILYVTMGSFALAVLSGIVIGGNVGATLTYLFAVIPILFLGVGSTAPGLISAGIDAVKSRADPTFDERRVRHEAAHFLVGYLLGYPIKSYKASGSTNEVEFYDSVDGDDYIANPGAQLTKEQV 295
BLAST of mRNA_E-siliculosus-1a_F_contig10561.407.1 vs. uniprot
Match: A0A7S3UVY9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVY9_HETAK) HSP 1 Score: 133 bits (335), Expect = 8.470e-35 Identity = 63/113 (55.75%), Postives = 82/113 (72.57%), Query Frame = 1 Query: 4 DDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGD 342 DDL+++L VC+ SF A G G IGGNVGA+ TY FA++PI+FLG+GSTAPG+IT+ I + + D+ ERR+RHEAAHFL GY G PI+SY ++G VEFYD+ GD Sbjct: 182 DDLRWSLVVVCLGSFILAAGSGIVIGGNVGATLTYLFAVIPILFLGVGSTAPGIITSAIEGFKTNTDSDFNERRIRHEAAHFLVGYALGFPIRSYTSEGPACEVEFYDTPAGD 294
BLAST of mRNA_E-siliculosus-1a_F_contig10561.407.1 vs. uniprot
Match: A0A7S2C0S6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0S6_9STRA) HSP 1 Score: 124 bits (310), Expect = 7.070e-32 Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = 1 Query: 1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYEERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAM--KFTPEEVDQVS 393 +D+LK AL V FS AV G +GGN GA+ TY FA+LPI+FLG+GSTAPG+I+AVI + + Y ERR++HEAAHFL GYLCG+PI+ Y DG V YD+ +G ++ M + T +E + +S Sbjct: 86 LDELKAALFAVTAFSSIMAVLSGVVVGGNAGATLTYLFAVLPIIFLGVGSTAPGLISAVIEVGKTRLDPKYGERRIKHEAAHFLMGYLCGVPIQGYDVDGALPEVTLYDTRKGALTRAPMDMRLTRDEANGLS 218
BLAST of mRNA_E-siliculosus-1a_F_contig10561.407.1 vs. uniprot
Match: A0A7S4HX10_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HX10_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.230e-26 Identity = 64/134 (47.76%), Postives = 84/134 (62.69%), Query Frame = 1 Query: 1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYE--ERRVRHEAAHFLSGYLCGLPIKSYK-ADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVS 393 +DD K A V + S AA+ A + NVGA+ Y FAL+P+ F+GIGSTAPG+I I++ + S D + +R RHEA HFL GYLCGLP+K Y D G VEF+ SAEG+ GR +FT EE+ +S Sbjct: 74 LDDFKDATIAVTLGSTVAAIASLALLPENVGATLCYLFALIPVGFIGIGSTAPGIIAGAISSFQGTSDDQAQRDDRICRHEAGHFLCGYLCGLPVKQYSIVDTGFPCVEFHPSAEGEALGR--EFTSEEIAALS 205
BLAST of mRNA_E-siliculosus-1a_F_contig10561.407.1 vs. uniprot
Match: A0A7S4MBA1_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MBA1_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.260e-25 Identity = 64/134 (47.76%), Postives = 84/134 (62.69%), Query Frame = 1 Query: 1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDYE--ERRVRHEAAHFLSGYLCGLPIKSYK-ADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVS 393 +DD K A V + S AA+ A + NVGA+ Y FAL+P+ F+GIGSTAPG+I I++ + S D + +R RHEA HFL GYLCGLP+K Y D G VEF+ SAEG+ GR +FT EE+ +S Sbjct: 186 LDDFKDATIAVTLGSTVAAIASLALLPENVGATLCYLFALIPVGFIGIGSTAPGIIAGAISSFQGTSDDQAQRDDRICRHEAGHFLCGYLCGLPVKQYSIVDTGFPCVEFHPSAEGEALGR--EFTSEEIAALS 317
BLAST of mRNA_E-siliculosus-1a_F_contig10561.407.1 vs. uniprot
Match: A0A7S3V807_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V807_9STRA) HSP 1 Score: 108 bits (269), Expect = 3.390e-25 Identity = 58/124 (46.77%), Postives = 78/124 (62.90%), Query Frame = 1 Query: 1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDD--YEERRVRHEAAHFLSGYLCGLPIKSYKA-DGGTTLVEFYDSAEGDMSGRAMK 363 ++D KYA +V S A + A + N GA+F Y FAL+PI+FL +GS+APG+I I + D E+R RHEA HFL GYLCGLPIKSY+A D G VEFY + +G+ +GR ++ Sbjct: 192 LEDFKYATLWVTGGSTVAGIASLALLPENTGATFCYIFALIPILFLAVGSSAPGIIAGAIKGFKENKDDKAAQEDRICRHEAGHFLCGYLCGLPIKSYQANDSGIPCVEFYPTTDGNFAGRELE 315
BLAST of mRNA_E-siliculosus-1a_F_contig10561.407.1 vs. uniprot
Match: A0A7S1VQE5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQE5_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.630e-23 Identity = 60/135 (44.44%), Postives = 83/135 (61.48%), Query Frame = 1 Query: 1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKS--QDDYEERRVRHEAAHFLSGYLCGLPIKSYK-ADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVSS 396 MDD KYA +V V A + NVGA+ Y A++PI+FLG+GSTAPG+I I + + + QD +R RHEA H L GYLCGLP+K Y +D G VEF+ ++EG ++GR +F PEE+ +S+ Sbjct: 189 MDDFKYATLYVTGTCSVLGVAALAFLPENVGATVCYAVAVIPILFLGVGSTAPGLIANAIASSKGTADDQDQRFDRICRHEAGHMLCGYLCGLPVKGYSMSDSGVPCVEFHPTSEGPVTGR--EFDPEEIAALST 321
BLAST of mRNA_E-siliculosus-1a_F_contig10561.407.1 vs. uniprot
Match: A0A7R9VLF5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLF5_9STRA) HSP 1 Score: 100 bits (250), Expect = 1.740e-23 Identity = 60/134 (44.78%), Postives = 81/134 (60.45%), Query Frame = 1 Query: 1 MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSTAPGVITAVINNVRRKSQDDY--EERRVRHEAAHFLSGYLCGLPIKSYK-ADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVS 393 +DD K A V + S A+ A + N+GA+ Y AL+P+ F+ IGSTAP +I I + + + D E+R RHEA HFL GYLCGLP+K+Y D G VEF+ SAEG+ SGR +FT EE+ +S Sbjct: 34 LDDFKDATIAVTLGSTILAIAALAVLPENIGATVCYLIALVPVGFIAIGSTAPSIIAGAIASFQGTADDQTQREDRICRHEAGHFLCGYLCGLPVKAYSIGDTGFPCVEFHPSAEGEASGR--EFTSEEIAALS 165 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10561.407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10561.407.1 >prot_E-siliculosus-1a_F_contig10561.407.1 ID=prot_E-siliculosus-1a_F_contig10561.407.1|Name=mRNA_E-siliculosus-1a_F_contig10561.407.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=136bp MDDLKYALGFVCVFSFAAAVGVGAAIGGNVGASFTYFFALLPIVFLGIGSback to top mRNA from alignment at E-siliculosus-1a_F_contig10561:902..2293- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10561.407.1 ID=mRNA_E-siliculosus-1a_F_contig10561.407.1|Name=mRNA_E-siliculosus-1a_F_contig10561.407.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1392bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10561:902..2293- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10561:902..2293- >mRNA_E-siliculosus-1a_F_contig10561.407.1 ID=mRNA_E-siliculosus-1a_F_contig10561.407.1|Name=mRNA_E-siliculosus-1a_F_contig10561.407.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10561:902..2293- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |