mRNA_E-siliculosus-1a_F_contig10559.402.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10559.402.1 vs. uniprot
Match: D7G159_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G159_ECTSI) HSP 1 Score: 439 bits (1130), Expect = 1.620e-151 Identity = 235/271 (86.72%), Postives = 239/271 (88.19%), Query Frame = 1 Query: 1 RVAKYLLETCNVDAGTADSVGYTPLAIAAQGGHVSIVRMLLKRGVAFLGKNAYRDAITGVAMTGNMEMLRELVYVEEGVHLRGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPLDVVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWMWPASPAVETTPDSAAATGGAALALAGPDAAEPGSAKNAAQLVPYPETEKEWVDSDESFDEAFASAMAGSWRLNLNVAVFRRSRPPPPTCGSEGGSSPVEQRAALVSCFE 813 +VAKYLLETCNVDAGTADSVGYTPLAI+AQGGHVSIVRMLLKRGVA LGKNAYRDAITGVAMTGNMEMLRELVYVE GVHL GAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNG TPLDVVDTKRSPQ GPAYRALSW WPAS A ETTPDSAAATGGAALAL G DAAEPGSAK+AAQLVPYPETEKEWVDSDESFDEAFASA+AGSWRLN VAVFRRSRPPPP CGSEGG VEQRAALVS FE Sbjct: 194 KVAKYLLETCNVDAGTADSVGYTPLAISAQGGHVSIVRMLLKRGVALLGKNAYRDAITGVAMTGNMEMLRELVYVEGGVHLLGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGGTPLDVVDTKRSPQ----------------GPAYRALSWRWPASSAFETTPDSAAATGGAALALPGLDAAEPGSAKDAAQLVPYPETEKEWVDSDESFDEAFASAVAGSWRLN--VAVFRRSRPPPPPCGSEGGYPAVEQRAALVSRFE 446
BLAST of mRNA_E-siliculosus-1a_F_contig10559.402.1 vs. uniprot
Match: A0A6H5K5E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5E4_9PHAE) HSP 1 Score: 394 bits (1012), Expect = 9.430e-137 Identity = 207/234 (88.46%), Postives = 210/234 (89.74%), Query Frame = 1 Query: 115 MLLKRGVAFLGKNAYRDAITGVAMTGNMEMLRELVYVEEGVHLRGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPLDVVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWMWPASPAVETTPDSAAATGGAALALAGPDAAEPGSAKNAAQLVPYPETEKEWVDSDESFDEAFASAMAGSWRLNLNVAVFRRSRPPPPTCGSEGGSSPVEQRAALVSCFER 816 MLLKRGVAFLG NAYRDAITGVAMTGN+EMLRELVYVE GVHL GAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPL+VVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSW WPASPA ETTPDSAAA GGAALAL G DAAEPGSAKNAAQL+PYPETEKEWVD DESFDEAFASAMAGSWRLNLNVAVFRRSRP EQRAALVS FER Sbjct: 1 MLLKRGVAFLGTNAYRDAITGVAMTGNIEMLRELVYVEGGVHLLGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPLNVVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWRWPASPAFETTPDSAAAMGGAALALPGLDAAEPGSAKNAAQLIPYPETEKEWVDRDESFDEAFASAMAGSWRLNLNVAVFRRSRPXXXXXXXXXXXXXAEQRAALVSRFER 234 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10559.402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10559.402.1 >prot_E-siliculosus-1a_F_contig10559.402.1 ID=prot_E-siliculosus-1a_F_contig10559.402.1|Name=mRNA_E-siliculosus-1a_F_contig10559.402.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=275bp RVAKYLLETCNVDAGTADSVGYTPLAIAAQGGHVSIVRMLLKRGVAFLGKback to top mRNA from alignment at E-siliculosus-1a_F_contig10559:50..1278- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10559.402.1 ID=mRNA_E-siliculosus-1a_F_contig10559.402.1|Name=mRNA_E-siliculosus-1a_F_contig10559.402.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1229bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10559:50..1278- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10559:50..1278- >mRNA_E-siliculosus-1a_F_contig10559.402.1 ID=mRNA_E-siliculosus-1a_F_contig10559.402.1|Name=mRNA_E-siliculosus-1a_F_contig10559.402.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1650bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10559:50..1278- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |