mRNA_E-siliculosus-1a_F_contig10554.401.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match: A0A6H5JTY8_9PHAE (CP-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTY8_9PHAE) HSP 1 Score: 166 bits (419), Expect = 2.340e-46 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1 Query: 1 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTV+
Sbjct: 231 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVK 316
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match: A0A836CE27_9STRA (Nug1, nuclear ribosome-associated GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE27_9STRA) HSP 1 Score: 133 bits (334), Expect = 2.550e-34 Identity = 65/86 (75.58%), Postives = 76/86 (88.37%), Query Frame = 1 Query: 1 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
G A+KA L+RSG++G EALM +LKNYCRSL++KTAITVG+IGYPNVGKSSLINSLKRSKAVGVS TPGFTK+MQE+ LDK V+
Sbjct: 231 GDANKAGAAALSRSGSIGAEALMNILKNYCRSLDIKTAITVGIIGYPNVGKSSLINSLKRSKAVGVSPTPGFTKAMQEVQLDKLVK 316
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match: A0A4D9DAV5_9STRA (CP-type G domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAV5_9STRA) HSP 1 Score: 120 bits (301), Expect = 9.050e-30 Identity = 58/86 (67.44%), Postives = 74/86 (86.05%), Query Frame = 1 Query: 1 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
G A KA +L+RSG+VG EAL+ +LKNY RSL++KT+I+VGV+GYPNVGKSSLINSLKR+KA GVS+TPGFT+ MQE+ LDK ++
Sbjct: 235 GDASKAGANLLSRSGSVGAEALLQLLKNYSRSLDIKTSISVGVVGYPNVGKSSLINSLKRTKAAGVSSTPGFTRCMQEVQLDKHIK 320
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match: A0A1Y3NJJ6_PIRSE (G domain-containing protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NJJ6_PIRSE) HSP 1 Score: 113 bits (282), Expect = 7.200e-29 Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = 1 Query: 4 SADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
SAD A+D MLN S +G + L+ +LKNYCR+ N+KT+ITVGVIG+PNVGKSS+INSLKRSK V +TPG TK+ Q+IHLDK ++
Sbjct: 52 SADIASDSMLNSSECIGADNLIKLLKNYCRNANIKTSITVGVIGFPNVGKSSVINSLKRSKVCNVGSTPGVTKNAQQIHLDKNIK 136
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match: H3GVP4_PHYRM (CP-type G domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GVP4_PHYRM) HSP 1 Score: 117 bits (293), Expect = 8.530e-29 Identity = 60/86 (69.77%), Postives = 70/86 (81.40%), Query Frame = 1 Query: 1 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
G ADKAA +N S AVGT+ALM +LKNYCRS +KTAITVGVIGYPNVGKSS+INSLKRSKA VS+T G TK MQE+H+D ++
Sbjct: 203 GRADKAAGEAVNGSKAVGTDALMQLLKNYCRSHGVKTAITVGVIGYPNVGKSSVINSLKRSKAASVSSTAGHTKVMQEVHIDSKIK 288
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match: A0A1V9YUQ5_9STRA (Guanine nucleotide-binding protein-like 3 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YUQ5_9STRA) HSP 1 Score: 112 bits (280), Expect = 2.760e-28 Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 1 Query: 10 DKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
+KA ++ S AVGTEALM +LKNYCRS N+KTAITVGVIGYPNVGKSS+INSLKRSKA VS+ G TK +QEIHLD ++
Sbjct: 211 EKAQGKLMTGSRAVGTEALMQLLKNYCRSSNIKTAITVGVIGYPNVGKSSVINSLKRSKAASVSSIAGHTKVVQEIHLDNKIK 293
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match: A0A6G0JUJ3_9STRA (CP-type G domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0JUJ3_9STRA) HSP 1 Score: 115 bits (288), Expect = 4.360e-28 Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1 Query: 1 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
G ADKAA ++ S AVGT+ALM +LKNYCRS +KTAITVGVIGYPNVGKSS+INSLKRSKA VS T G TK MQE+H+D ++
Sbjct: 206 GKADKAAGEAVSGSKAVGTDALMQLLKNYCRSHGVKTAITVGVIGYPNVGKSSVINSLKRSKAASVSCTAGHTKVMQEVHIDSKIK 291
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match: A0A1Y1V3D0_9FUNG (p-loop containing nucleoside triphosphate hydrolase protein n=2 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1V3D0_9FUNG) HSP 1 Score: 114 bits (285), Expect = 4.670e-28 Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1 Query: 4 SADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
SAD A+D MLN S +G + L+ +LKNYCRS N+KT+ITVGVIG+PNVGKSS+INSLKRSK V +TPG TK+ Q+IHLDK ++
Sbjct: 211 SADIASDSMLNSSECIGADNLIKLLKNYCRSANIKTSITVGVIGFPNVGKSSVINSLKRSKVCNVGSTPGVTKNAQQIHLDKNIK 295
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match: A0A8K1CQG3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQG3_PYTOL) HSP 1 Score: 115 bits (287), Expect = 6.170e-28 Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 1 Query: 1 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
G ADKA+ M++ S AVGT+ALM +LKNYCR+ ++KTAITVGVIGYPNVGKSS+INSLKRSKA VS+ G TK MQEIH+D ++
Sbjct: 217 GRADKASTDMVSGSKAVGTDALMQLLKNYCRNNHIKTAITVGVIGYPNVGKSSVINSLKRSKAASVSSVAGHTKVMQEIHIDSKIK 302
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match: GNL3_DICDI (Guanine nucleotide-binding protein-like 3 homolog n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=GNL3_DICDI) HSP 1 Score: 115 bits (287), Expect = 6.570e-28 Identity = 54/81 (66.67%), Postives = 70/81 (86.42%), Query Frame = 1 Query: 16 AADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
A++ MLN + ++G E L+ +LKNY RSLN+KT++TVG+IGYPNVGKSSLINSLKR+++VGV ATPGFTK QE+HLDK V+
Sbjct: 231 ASNDMLNSTESLGAEQLLQLLKNYSRSLNIKTSVTVGIIGYPNVGKSSLINSLKRTRSVGVGATPGFTKFAQEVHLDKNVK 311 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10554.401.1 >prot_E-siliculosus-1a_F_contig10554.401.1 ID=prot_E-siliculosus-1a_F_contig10554.401.1|Name=mRNA_E-siliculosus-1a_F_contig10554.401.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp MLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKback to top mRNA from alignment at E-siliculosus-1a_F_contig10554:594..1706+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10554.401.1 ID=mRNA_E-siliculosus-1a_F_contig10554.401.1|Name=mRNA_E-siliculosus-1a_F_contig10554.401.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1113bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10554:594..1706+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10554:594..1706+ >mRNA_E-siliculosus-1a_F_contig10554.401.1 ID=mRNA_E-siliculosus-1a_F_contig10554.401.1|Name=mRNA_E-siliculosus-1a_F_contig10554.401.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10554:594..1706+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |