mRNA_E-siliculosus-1a_F_contig1055.400.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: D8LRM3_ECTSI (FkbM n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM3_ECTSI) HSP 1 Score: 270 bits (691), Expect = 4.340e-87 Identity = 135/145 (93.10%), Postives = 140/145 (96.55%), Query Frame = 1 Query: 1 QEVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEEEFYFYRDNPGESTRHRGERGEQRQALDADVDAASWRRVVEERKHPDRARGARY 435
+EVFVRR YFQHGIRVEEGAVVVDAGANIGLFSLQC REAKGVQV AFEPIPVIYDVLVRNLFNA+SG VKEGTCPKPVALRVALGAEQAEEEFYF+RDNPGESTRHRGERGEQ+QAL+ADVDAASWRRVVEE KHPDRARGARY
Sbjct: 29 EEVFVRRCYFQHGIRVEEGAVVVDAGANIGLFSLQCLREAKGVQVFAFEPIPVIYDVLVRNLFNASSGPVKEGTCPKPVALRVALGAEQAEEEFYFFRDNPGESTRHRGERGEQQQALEADVDAASWRRVVEEGKHPDRARGARY 173
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: A0A101SVT2_9ACTN (Methyltransf_21 domain-containing protein n=1 Tax=Streptomyces bungoensis TaxID=285568 RepID=A0A101SVT2_9ACTN) HSP 1 Score: 87.8 bits (216), Expect = 4.050e-16 Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 1 Query: 4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
E+FV R+Y +HGIR+ + A +VDAGAN+GLFSL RE G ++AFEPIP I+ L+ NL + + V+ +R ALG + E F FY PG STR+
Sbjct: 34 EIFVERAYLKHGIRLSDSARIVDAGANVGLFSLFVKREFPGASILAFEPIPTIHQALLENLDSHGAKDVE--------VVRAALGRQPEERVRFTFYPALPGNSTRY 132
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: A0A370ASV3_9ACTN (FkbM family methyltransferase n=1 Tax=Streptomyces corynorhini TaxID=2282652 RepID=A0A370ASV3_9ACTN) HSP 1 Score: 85.1 bits (209), Expect = 3.970e-15 Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 1 Query: 4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
E+FV R+Y +HGI++ + + +VDAGAN+GLFSL +E G +++AFEPIP I+ L NL + + V+ +R ALG++ E+ F FY PG STR+
Sbjct: 34 EIFVERTYLKHGIQLSDSSRIVDAGANVGLFSLFMKQEFPGARILAFEPIPAIHQALTENLDSHGAKDVE--------VVRSALGSQYEEQVRFTFYPSLPGNSTRY 132
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: A0A0N1NKX6_9ACTN (Methyltransferase FkbM family n=3 Tax=Actinomycetia TaxID=1760 RepID=A0A0N1NKX6_9ACTN) HSP 1 Score: 83.2 bits (204), Expect = 1.700e-14 Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
E+FV R+Y +HGI++ + + +VDAGAN+GLFSL +E G +++AFEPIP I+ L+ NL + + V+ +R ALG ++ F FY PG STR+
Sbjct: 34 EIFVERAYLKHGIQLSDSSRIVDAGANVGLFSLFVKQEFPGARILAFEPIPAIHQALLENLDSRGAKDVE--------VVRSALGGRHEDQVRFTFYPALPGNSTRY 132
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: UPI0006E3758B (FkbM family methyltransferase n=1 Tax=Streptomyces graminilatus TaxID=1464070 RepID=UPI0006E3758B) HSP 1 Score: 83.2 bits (204), Expect = 1.700e-14 Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
E+FV R+Y +HGI++ + + VVDAGAN+GLFSL +E G +++AFEPIP I+ L+ NL + + V+ R ALG + +E F FY PG STR+
Sbjct: 34 EIFVERAYLKHGIQLSDSSRVVDAGANVGLFSLFVKQEFPGAKILAFEPIPAIHRALLENLDSHGAKDVE--------VHRSALGRQHEDEVRFTFYPSLPGNSTRY 132
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: A0A1A9C7P2_9ACTN (Methyltransferase, FkbM family n=1 Tax=Streptomyces sp. DI166 TaxID=1839783 RepID=A0A1A9C7P2_9ACTN) HSP 1 Score: 82.4 bits (202), Expect = 3.160e-14 Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
E+F R+Y +HGI++ + + VVDAGAN+GLFSL +E G +++AFEPIP I+ LV NL + + V+ +R ALG + E+ F FY PG STR+
Sbjct: 34 EIFGERAYLKHGIQLSDSSRVVDAGANVGLFSLFVKQEFPGARILAFEPIPAIHRALVENLDSHGAKDVE--------VVRAALGRKAEEQVRFTFYPALPGNSTRY 132
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: UPI00196289BA (FkbM family methyltransferase n=1 Tax=Streptomyces actuosus TaxID=1885 RepID=UPI00196289BA) HSP 1 Score: 80.9 bits (198), Expect = 1.090e-13 Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 1 Query: 4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEEE--FYFYRDNPGESTRH 321
E+FV R+Y +HGI++ A VVDAGAN+GLFSL +E +++AFEPIP I+ L+ NL + V+ +R ALG QAEE F FY PG STR+
Sbjct: 34 EIFVERAYLRHGIQLSGSARVVDAGANVGLFSLFVKQEFPDARILAFEPIPAIHRALLENLDGHGAKDVE--------VVRAALGR-QAEERVRFTFYPAIPGNSTRY 132
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: A0A291S0C4_9ACTN (Methyltransf_21 domain-containing protein n=13 Tax=Streptomyces TaxID=1883 RepID=A0A291S0C4_9ACTN) HSP 1 Score: 78.6 bits (192), Expect = 5.270e-13 Identity = 47/107 (43.93%), Postives = 59/107 (55.14%), Query Frame = 1 Query: 4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
EVFV R Y +HGIR+ A VVD GAN+G+FSL E +++AFEPIP IY L NL + VK +R ALG E+ F ++ PG STRH
Sbjct: 15 EVFVDRDYLKHGIRIPGSARVVDVGANVGMFSLFVVGECPDARILAFEPIPEIYQALRENLSRYGAKGVKP--------VRAALGGLPEEKVRFTYFPALPGNSTRH 113
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: UPI0016739E92 (FkbM family methyltransferase n=1 Tax=Streptomyces capitiformicae TaxID=2014920 RepID=UPI0016739E92) HSP 1 Score: 78.6 bits (192), Expect = 6.900e-13 Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 1 Query: 4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
E+F R+Y +HGI + + + VVDAGAN+GLFSL +E G +++AFEPIP I+ L+ NL + V+ R ALG +E F FY PG STR+
Sbjct: 34 EIFFERTYLKHGITLSDSSRVVDAGANVGLFSLFVKQEFPGAKILAFEPIPAIHRALLGNLDEHGAKDVE--------VHRAALGRRHEDEVRFTFYPALPGNSTRY 132
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: A0A0C5VNW6_9GAMM (3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Gynuella sunshinyii YC6258 TaxID=1445510 RepID=A0A0C5VNW6_9GAMM) HSP 1 Score: 79.7 bits (195), Expect = 3.360e-12 Identity = 44/96 (45.83%), Postives = 54/96 (56.25%), Query Frame = 1 Query: 4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEEEFYFY 291
E+FV ++Y + GI VE G VV+D GANIG+FSL E K VQ+ AFEP P YDVL +NL P VAL + + E EF FY
Sbjct: 420 EIFVEKTYLKKGITVERGEVVIDIGANIGMFSLFIASEFKEVQIFAFEPSPATYDVLNKNLALYI---------PNAVALPFGVSNQDGEAEFVFY 506 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1055.400.1 >prot_E-siliculosus-1a_F_contig1055.400.1 ID=prot_E-siliculosus-1a_F_contig1055.400.1|Name=mRNA_E-siliculosus-1a_F_contig1055.400.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=146bp QEVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPback to top mRNA from alignment at E-siliculosus-1a_F_contig1055:32536..35861- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1055.400.1 ID=mRNA_E-siliculosus-1a_F_contig1055.400.1|Name=mRNA_E-siliculosus-1a_F_contig1055.400.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3326bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1055:32536..35861- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1055:32536..35861- >mRNA_E-siliculosus-1a_F_contig1055.400.1 ID=mRNA_E-siliculosus-1a_F_contig1055.400.1|Name=mRNA_E-siliculosus-1a_F_contig1055.400.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1055:32536..35861- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |