mRNA_E-siliculosus-1a_F_contig10543.395.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10543.395.1 vs. uniprot
Match: D8LCM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM0_ECTSI) HSP 1 Score: 631 bits (1627), Expect = 3.750e-224 Identity = 386/462 (83.55%), Postives = 396/462 (85.71%), Query Frame = 1 Query: 1 MAGQPTVYYVTYTNPADAGGGFVGGGGGSSIGAPHVGWARQQAPEPPPAYPYRGPTAHPXXXXXXXXXXXGXXXXXXXXXAVTQGAAATAPPHGGAPAPAYPGLNAQHCAPCPPAYQAATST-------------------------TVXXXXXXXXXXNGYFPAAPGADSS-DDPSGSRRGXXXXXXXAATEVAHESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDEEDDDTPELNASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGTCLVHFVAPFSWGLVFWAGGFASLKYGGNAPCGGGTGGDGLESYLRISGALMAVFGTGMLALSFVTLMFACYSSSLSXXXXXXXXXXXXXGCCSRARDAVHKKFMSKSPIFDLAWQVQSVVLSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV 1308
MAGQPTVYYVTYTNPA AGG FVGGGG SS+GAPHV ARQQAPEPPPAYPYRG TA+P XXXXXXXXXX XXXXXXXXXAVTQGAAATAPPHGGAPA YPGLNAQH AP PPAYQAAT+T TV GYFPAAPGADSS DDPSGSRRG XXX AATEVA ESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDE+DDDTPE NASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKS HKIPPGDMRHCGGTCLVHFVAPFSWGLV+WAGG+ S+ YG NAPCGGGTGGDGLESYL ISGALMAVFGTGMLALSFVTLMFAC XXXXXXXXXXXXXGCCS+ARDAVHK+FMSKSPIFDLAWQVQSV+LSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV
Sbjct: 1 MAGQPTVYYVTYTNPASAGGEFVGGGG-SSVGAPHVDRARQQAPEPPPAYPYRGSTAYPPXXXXXXXXXXXXXXXXXXXXAVTQGAAATAPPHGGAPA--YPGLNAQHGAPRPPAYQAATTTVLGXXXXXXXXXXXXXXXXXXXXXTTVPAYPGINVQHRGYFPAAPGADSSSDDPSGSRRGTKXXXEEAATEVARESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDEDDDDTPEENASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKSTHKIPPGDMRHCGGTCLVHFVAPFSWGLVYWAGGYVSIMYGDNAPCGGGTGGDGLESYLTISGALMAVFGTGMLALSFVTLMFACXXXXXXXXXXXXXXXXXXXGCCSKARDAVHKRFMSKSPIFDLAWQVQSVLLSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV 459
BLAST of mRNA_E-siliculosus-1a_F_contig10543.395.1 vs. uniprot
Match: A0A6H5JS15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS15_9PHAE) HSP 1 Score: 449 bits (1156), Expect = 1.430e-154 Identity = 258/339 (76.11%), Postives = 269/339 (79.35%), Query Frame = 1 Query: 295 PAYPGLNAQHCAPCPPAYQAATSTTVXXXXXXXXXXNGYFPAAPGADSS-DDPSGSRRGXXXXXXXAATEVAHESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDEEDDDTPELNASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGTCLVHFVAPFSWGLVFWAGGFASLKYGGNAPCGGGTGGDGLESYLRISGALMAVFGTGMLALSFVTLMFACYSSSLSXXXXXXXXXXXXXGCCSRARDAVHKKFMSKSPIFDLAWQVQSVVLSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV 1308
PAYPGLN QH GYFPAAPGADSS DDPSGSRRG A TEVAHESR WKWAMFVLGNLISLAVVASEIGEL+VCFEEN +E+DDDT E NAS A+G LM LVL LLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGT LVHFVAPF WGLV++ GG AS YG NAPCGGG GGDG+ESYL+ISG LM VFGTGMLALSFV LM AC XXXXXXXXX GCCSRARDAVHK+ MSKSPIFDLAWQVQSV+LSYRAGAV+LASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPI V
Sbjct: 23 PAYPGLNVQH--------------------------RGYFPAAPGADSSSDDPSGSRRGMKKKEKEAVTEVAHESRSWKWAMFVLGNLISLAVVASEIGELSVCFEENPEEDDDDTLEENASSAFGALMLNLVLSLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGTFLVHFVAPFFWGLVYFTGGIASSMYGDNAPCGGGNGGDGMESYLKISGILMIVFGTGMLALSFVALMLACXXXXXXXXXXXXXXX----GCCSRARDAVHKRLMSKSPIFDLAWQVQSVLLSYRAGAVNLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPIIV 331 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10543.395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10543.395.1 >prot_E-siliculosus-1a_F_contig10543.395.1 ID=prot_E-siliculosus-1a_F_contig10543.395.1|Name=mRNA_E-siliculosus-1a_F_contig10543.395.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=437bp MAGQPTVYYVTYTNPADAGGGFVGGGGGSSIGAPHVGWARQQAPEPPPAYback to top mRNA from alignment at E-siliculosus-1a_F_contig10543:586..2282+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10543.395.1 ID=mRNA_E-siliculosus-1a_F_contig10543.395.1|Name=mRNA_E-siliculosus-1a_F_contig10543.395.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1697bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10543:586..2282+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10543:586..2282+ >mRNA_E-siliculosus-1a_F_contig10543.395.1 ID=mRNA_E-siliculosus-1a_F_contig10543.395.1|Name=mRNA_E-siliculosus-1a_F_contig10543.395.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2622bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10543:586..2282+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |