mRNA_E-siliculosus-1a_F_contig1054.394.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1054.394.1 vs. uniprot
Match: A0A6H5KVN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN1_9PHAE) HSP 1 Score: 2507 bits (6498), Expect = 0.000e+0 Identity = 1506/1853 (81.27%), Postives = 1556/1853 (83.97%), Query Frame = 1 Query: 1 MVYTITLTNPLASGHDGSWEFDLLMECVVGTLPADSTPSPQGNGPVPTQIVEAVADSSDGDCGGSDHDTDGGVGXXXXXXXXXXXXXGVERDSPKPPPSIDGGGNKDLVVSDDEXXXXXXXXXXXXXXXXXXXXXX------------------------GSMKKQEAXXXXXXXXXXXXQPEVDVGGGDGTVGEALENEGAMDVSENNSEDGNDKNVRDGGHPLAESTQPEAVATRSTDGGDGVTDNSKRAVEGTENRKGDGGTPVPSSQQIGSSGSNSASKDTQEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPSLLPNGEADSSEDETIEMAVSNRGVQPPVPAAMPTPVLHLALDGGERPLAATSAPRSPTTVSVRSSIGSIISLDSTGNDSDHVVGGSGEDSWSSSDGETEDDDSDDYEPDILPPPCHILHRHRKTYKNALCEDCYMEHAEALRKAKLDVSDMDSDATGRSEXXXXXXXXXXXXXXXXXXXXXGGKRSRKTRGSSNESTGSXXXXXXXRRRVAGEVKSALPGSAPSPGRRLVKPHQKKAKLVTDGDDRKSAATRLLEDTSSSESDGIGDDERDVVVQSNKGKNKRLAESVQDNRRANAPPGKQKXXXXXXXXXXXXDLLGALIENPAQARRKTSSSATPSAVARQPKSRPHLVKQRSADAVRIDGSVTGSDGGSHPQLARAVSLDTATSLSLTQYKTGGARRTDAPEGIPTSSSSYKIPMKASNGVKAAGGAPKDVLSKKRDQDVRQRSKTPIREHSSGXXXXXXXXXXXXXXXXXXXXAVSSRMKAQYDKVPNLEGVRRKKSNGKFFVWVGDQPLDGIEYPSAEECAKAYHQLNPPSSSRGTQKTPKLNASGGKAPTHVESQGLTPLCPERGSRIAKGTLKSGYNKLPFFAPKEARDRAAGKKPXXXXXXXXXXXXXXXXXXAPSTPAPRKHQHGAAAALALIGTPNSGPSGRPNGKREPLPLVAGFDKPRNSKIRWSSPIKNDEDLNGRRKLPPASALPGRSGLRGGRAGRPVPDTRQGCAQTGLSGEFSSSEEDPEDQETGEAATEGSELARLSAAEAAAPANGSPLERLPDSGASPENSELGKIRVPPQGAVVPTATVGSPASVSAGPPSLPDVGRDRGSGETSKAASGRCAGGSSDPEEPDAADTATPSCDHRVRDRQRDTAADNAQGGSPSSQSAECVEENLDEEQGRELMMSMMAGGPGERGQTPTTNMVADGPVSEEDEADLGGEXXXXXXXXXXXXXXXDPAAVSPPTEVEDSVPPSPQTPQSDHDGHISSSSGENEGDEAMSFAEELPPPVTTVAWRTPKKTVVGGXXXXXXSGTSNSPSCDSDHLTASVATTTHKPKLSLRSFTRFSDSGAAPAAPVAAVTAPFPISYERPPQLPIDHDTHGQLLADAPTVPLPPNPPRASNGTVRQVVWRNPRQTAAVSSSYPEAQQDNEVPHSACQPDLPPEVAVRPGADVMHPPAVPAVSVETPPISWRTPGRSGGVASRLDNVSSCSVSQEARRHEKLRVASSSPLLSSSSRVDVESNRSDEQAEPLDRGIRVLPPFGWCRQPNERHSIPPNQLETLPSNAARPTATSEGVAMRQRREEDHRPNGHRPSVSGEHARRTDEGLSRSMSSRSNPRERSXXXXXXXXXXXQRRPEYTAREEYRSHXXXXXXWDERDGYDHGNQGSSRSSSSQYTGVGGRMVGYHGGDSGGLRDDVSRHARGGRYMGGGVXXXXXXXXXXXXXXXXXXXXDPFGRDDRNEGRGDGPGFNTYRGSNWGGDGGCGRGRGRDHGSVDWRHGHDHHRPEGRHGRSRSPQRNRWT 5487
MVYTITLTNPLASGHDGSWEFDLLMECVVGTLPADS+PSPQGNGPVP QIVEAVADSSDGDCGGSDHDTDGG+GXXXXXXXXXXX GVE DSP+PPPSIDGGG KDLVVSD E XXXXXXXXXXXXXXXXXXXXX G MKK+EA PE DVGGGDGTVG ALEN+GAMDVSE+NS+DGNDKNV DG HPLAEST+P AVATRSTDGGD VT+NSKRAVEGTE RKGDGGTPVPSSQQ+GSSGS SASKDTQEAAXXXXXXXXXXXXXXXXXXXXXX SPSLLP+ EADS++DETIEMAVSNRGVQPPVPA MPTP L LAL GGERPLA T APRSPT VSVRSS+GSIISLDS GNDSD+VVGGSGEDSWS SD DYEPDILPPPCH+LHRHRKTYKNALCEDCY+EHAEALRKAKLDVS++DSDA GR+E XXXXXXXXXXXXXXX GGKRS++TR SS+ESTGSXX RRRV GEVKSALP SAPSPGRRLVKPHQK K +T GDDRKSAATRLLEDTSSSE DG GDDERDVVV SNKGKNKRLAESVQDN+RANAPPGKQK DLLGALIENPA ARR+TSSSAT SAVARQPKS PHLVKQRSADAVRI GSVTGSDGGSHPQ+ARAVSLDTATSLSLTQYKTGGARRTDAPE IPTSSSSYKIPMKASNGVKAAGGAP VL+KKRD DVRQRSK P+REHSSG AVSSRMKAQYDKVPNLEGVRRKKSNGKFF+WVGDQPLDGIEYPSAEECAKAYHQL+PPSSSRG QK KLNASGGKAPTHVESQGLTPL PERGSRIAKGT KSGYNKLPFFAPKEAR+RA GKKP APSTPAPRKHQHGAAAALALIGTPNSG GRPNGKREPLPLVAGFDKP SKIRWSSPIKNDEDLNGRRKLPPASALPGRSGLRGGRAGRPVPDTRQGCAQTGLSGEFSSSEED +DQETGEAAT+GSELARLSAAEA APANGSPLERLPDSGAS EN+ELGKIRVP QGAVVPTAT SPASVSAGPPSLPD GRDR GETSKA SGRCA GSS+PEE D ADTATPSCDHRVR+RQR+ AA+NAQGGSPS QSAECVEENLDEEQGRELMMSMMAGGPGERGQ PTTNMVA GPVSEEDEADLGGEXXXXXXXXXXXXXXXDPAAVSPPTEV+DSVPPSPQTPQSDHDGHISSSSGEN GDEA FAEELP XXXXXX T NSPSCDSD LTASVATT HKPKLSLRSFTRFSDSGAAPAAPVAAVTAPFPISYERPPQL ID+DTHGQLLADAPTVPLPPNPPRASNGTVRQVVWRNPRQTAAVSSSYPEAQQDNEVPHSACQPDLPPEVAVRPGAD MHPPAVPAVSVETPPI WRTPGRSG V SRLDNVS CSVSQEARRHE+L+ ASSSPLLSSSSRVDVESNRSDEQA+PLDRGIRVLPPFGWCRQPNERHSIPPNQLETLPSNA+RPTA SEGVAMRQRRE DHRPNG RPSVS EHA R DEGLSRS SSRSNPRERS XXXXXXXXX RRP+ TAREEYRSH WDERDGYDHGNQGSSR+SSS+YTGVGGRMVGYHG DS LRDDV+RHARGGRYMGGGV DPFGRDDRNEGRGDGPGFNTYRGSNWGGD GCGRGRGRDHGSVDWRH SRSPQR+RWT
Sbjct: 1 MVYTITLTNPLASGHDGSWEFDLLMECVVGTLPADSSPSPQGNGPVPNQIVEAVADSSDGDCGGSDHDTDGGIGXXXXXXXXXXXESGVEGDSPQPPPSIDGGGKKDLVVSDGEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDSEGFMKKREAQSAPQQQARQQQHPEADVGGGDGTVGVALENDGAMDVSEDNSKDGNDKNVGDGCHPLAESTKPAAVATRSTDGGDAVTNNSKRAVEGTEKRKGDGGTPVPSSQQMGSSGSTSASKDTQEAAXXXXXXXXXXXXXXXXXXXXXXVR----------------------------SPSLLPSEEADSNQDETIEMAVSNRGVQPPVPAIMPTPGLDLALHGGERPLATTPAPRSPTAVSVRSSVGSIISLDSIGNDSDNVVGGSGEDSWSDSDXXXXXXXXXDYEPDILPPPCHMLHRHRKTYKNALCEDCYIEHAEALRKAKLDVSELDSDAAGRNENATRXXXXXXXXXXXXXXXGVGGKRSQETRDSSSESTGSXXGDRKKRRRVVGEVKSALPDSAPSPGRRLVKPHQKAKKPMTGGDDRKSAATRLLEDTSSSEGDGSGDDERDVVVHSNKGKNKRLAESVQDNQRANAPPGKQKQVSNGAGRGGNGDLLGALIENPAHARRRTSSSATSSAVARQPKS-PHLVKQRSADAVRIGGSVTGSDGGSHPQIARAVSLDTATSLSLTQYKTGGARRTDAPESIPTSSSSYKIPMKASNGVKAAGGAPMGVLNKKRDPDVRQRSKPPVREHSSGTNSNSINTSSAAKEAPAPVPAVSSRMKAQYDKVPNLEGVRRKKSNGKFFIWVGDQPLDGIEYPSAEECAKAYHQLHPPSSSRGPQKPSKLNASGGKAPTHVESQGLTPLFPERGSRIAKGTYKSGYNKLPFFAPKEARNRALGKKPPAAAREQKAKESAADRRRAPSTPAPRKHQHGAAAALALIGTPNSGHPGRPNGKREPLPLVAGFDKPWKSKIRWSSPIKNDEDLNGRRKLPPASALPGRSGLRGGRAGRPVPDTRQGCAQTGLSGEFSSSEEDLQDQETGEAATKGSELARLSAAEAGAPANGSPLERLPDSGASSENNELGKIRVPQQGAVVPTATAVSPASVSAGPPSLPDGGRDREPGETSKAPSGRCASGSSNPEELDDADTATPSCDHRVRNRQRNAAAENAQGGSPSLQSAECVEENLDEEQGRELMMSMMAGGPGERGQMPTTNMVAGGPVSEEDEADLGGEXXXXXXXXXXXXXXXDPAAVSPPTEVQDSVPPSPQTPQSDHDGHISSSSGENGGDEATPFAEELP--XXXXXXXXXXXXXXXXXXXXXXXXTCNSPSCDSDRLTASVATTAHKPKLSLRSFTRFSDSGAAPAAPVAAVTAPFPISYERPPQLSIDNDTHGQLLADAPTVPLPPNPPRASNGTVRQVVWRNPRQTAAVSSSYPEAQQDNEVPHSACQPDLPPEVAVRPGADAMHPPAVPAVSVETPPIPWRTPGRSGAVGSRLDNVSCCSVSQEARRHEELQAASSSPLLSSSSRVDVESNRSDEQAKPLDRGIRVLPPFGWCRQPNERHSIPPNQLETLPSNASRPTAASEGVAMRQRREGDHRPNGRRPSVSREHASRADEGLSRSTSSRSNPRERSSSXXXXXXXXXXRRPDRTAREEYRSHRDGRSRWDERDGYDHGNQGSSRTSSSRYTGVGGRMVGYHGADSVDLRDDVNRHARGGRYMGGGVSGGRGYGHNRNGPNR-----DPFGRDDRNEGRGDGPGFNTYRGSNWGGDDGCGRGRGRDHGSVDWRHXXXXXXXXXXXXXSRSPQRHRWT 1817
BLAST of mRNA_E-siliculosus-1a_F_contig1054.394.1 vs. uniprot
Match: D8LLT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT0_ECTSI) HSP 1 Score: 1276 bits (3303), Expect = 0.000e+0 Identity = 769/910 (84.51%), Postives = 780/910 (85.71%), Query Frame = 1 Query: 415 MKKQEAXXXXXXXXXXXXQPEVDVGGGDGTVGEALENEGAMDVSENNSEDGNDKNVRDGGHPLAESTQPEAVATRSTDGGDGVTDNSKRAVEGTENRKGDGGTPVPSSQQIGSSGSNSASKDTQEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPSLLPNGEADSSEDETIEMAVSNRGVQPPVPAAMPTPVLHLALDGGERPLAATSAPRSPTTVSVRSSIGSIISLDSTGNDSDHVVGGSGEDSWSSSDGETEDDDSDDYEPDILPPPCHILHRHRKTYKNALCEDCYMEHAEALRKAKLDVSDMDSDATGRSEXXXXXXXXXXXXXXXXXXXXXGGKRSRKTRGSSNESTGSXXXXXXXRRRVAGEVKSALPGSAPSPGRRLVKPHQKKAK-LVTDGDDRKSAATRLLEDTSSSESDGIGDDERDVVVQSNKGKNKRLAESVQDNRRANAPPGKQKXXXXXXXXXXXXDLLGALIENPAQARRKTSSSATPSAVARQPKSRPHLVKQRSADAVRIDGSVTGSDGGSHPQLARAVSLDTATSLSLTQYKTGGARRTDAPEGIPTSSSSYKIPMKASNGVKAAGGAPKDVLSKKRDQDVRQRSKTPIREHSSGXXXXXXXXXXXXXXXXXXXXAVSSRMKAQYDKVPNLEGVRRKKSNGKFFVWVGDQPLDGIEYPSAEECAKAYHQLNPPSSSRGTQKTPKLNASGGKAPTHVESQGLTPLCPERGSRIAKGTLKSGYNKLPFFAPKEARDRAAGKKPXXXXXXXXXXXXXXXXXXAPSTPAPRKHQHGAAAALALIGTPNSGPSGRPNGKREPLPLVAGFDKPRNSKIRWSSPIKNDEDLNGRRKLPPASALPGRSGLRGGRAGRPVPDTRQGCAQTGLSG 3141
MKKQEA QPE DVGGGDGTVGEALENEGAMDVSE+N EDGNDKNVRDGGHPLAESTQP AVATRSTDGGDGVTDNSKRAVEGTE KGDGGTPVPSSQQI SSGS+SASKDTQEAAXXXXXXXXXXXXXXXXXXXXX PSPSLLP+ E DSSEDETIEMAVSNR VQPPVPA MPTP L LAL+GGERPLAATSAPRSPT VSVRSSIGSIISLDSTGNDSD+VVGGSGEDSWSSSDGETEDDDSDDYEPDILPPPCH+LHRHRKTYKNALCEDCYMEHAEALRKAKLDVSDMDSDA GRSE XXXXXXXXXXXXXXXXX KRSRKTRG XXXXXXX VAGEVKSALPGSAPSPGRRLVKPHQKKAK LVT GDDRKSAATRLLEDTSS ESDGIGDDERDVVVQSNKGKNKRLAESVQDN+RA XXXXXXXXXXXXDLLGALIENPAQ RRKTSSSATPSAVARQPKSRPHLVKQRSADAVRI GSVTGSDGGS PQLARAVSLDTATSLSLTQYKTGGARRTDAPEGIP SSSSYKIPMKASNGVKAAGGAPKDVLSKKRDQDVRQRSKTP+REHSSG AVSSRMKAQYDKVPNLEGVRRKKSNGKFFVWVGDQPLDGIEYPSAEECAKAYH+L+PPSSSRG QKTPKLN SGGKAPTHVESQGLTPLCPERGSRIAKGTLKSGYNKLPFFAPKEARDRA+GKKP APSTPAPRKHQHGAAAALALIGTPNSGP GRPN KREPLPLVAGFDKPRNSKIRWSSPIKNDEDLNGRRKLPPASALPGRSGLRGGRAGRPVPDTRQGCAQTGLSG
Sbjct: 1 MKKQEAQSAPQQLARQQQQPEADVGGGDGTVGEALENEGAMDVSEDNLEDGNDKNVRDGGHPLAESTQPAAVATRSTDGGDGVTDNSKRAVEGTEKWKGDGGTPVPSSQQIDSSGSHSASKDTQEAAXXXXXXXXXXXXXXXXXXXXX------------------------------PSPSLLPSKEEDSSEDETIEMAVSNREVQPPVPAVMPTPELDLALNGGERPLAATSAPRSPTAVSVRSSIGSIISLDSTGNDSDNVVGGSGEDSWSSSDGETEDDDSDDYEPDILPPPCHMLHRHRKTYKNALCEDCYMEHAEALRKAKLDVSDMDSDAAGRSENATRXXXXXXXXXXXXXXXXXXXKRSRKTRGXXXXXXXXXXXXXXXXXXVAGEVKSALPGSAPSPGRRLVKPHQKKAKKLVTGGDDRKSAATRLLEDTSSGESDGIGDDERDVVVQSNKGKNKRLAESVQDNQRATXXXXXXXXXXXXXXXXXXXDLLGALIENPAQTRRKTSSSATPSAVARQPKSRPHLVKQRSADAVRIGGSVTGSDGGSDPQLARAVSLDTATSLSLTQYKTGGARRTDAPEGIPASSSSYKIPMKASNGVKAAGGAPKDVLSKKRDQDVRQRSKTPVREHSSGTISNSNNTSSAAKEAPAPVPAVSSRMKAQYDKVPNLEGVRRKKSNGKFFVWVGDQPLDGIEYPSAEECAKAYHRLHPPSSSRGPQKTPKLNTSGGKAPTHVESQGLTPLCPERGSRIAKGTLKSGYNKLPFFAPKEARDRASGKKPPAAEREQKAKEAAVARRRAPSTPAPRKHQHGAAAALALIGTPNSGPPGRPNAKREPLPLVAGFDKPRNSKIRWSSPIKNDEDLNGRRKLPPASALPGRSGLRGGRAGRPVPDTRQGCAQTGLSG 880 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1054.394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1054.394.1 >prot_E-siliculosus-1a_F_contig1054.394.1 ID=prot_E-siliculosus-1a_F_contig1054.394.1|Name=mRNA_E-siliculosus-1a_F_contig1054.394.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1830bp MVYTITLTNPLASGHDGSWEFDLLMECVVGTLPADSTPSPQGNGPVPTQIback to top mRNA from alignment at E-siliculosus-1a_F_contig1054:30176..38315+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1054.394.1 ID=mRNA_E-siliculosus-1a_F_contig1054.394.1|Name=mRNA_E-siliculosus-1a_F_contig1054.394.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8140bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1054:30176..38315+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1054:30176..38315+ >mRNA_E-siliculosus-1a_F_contig1054.394.1 ID=mRNA_E-siliculosus-1a_F_contig1054.394.1|Name=mRNA_E-siliculosus-1a_F_contig1054.394.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=10980bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1054:30176..38315+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |