mRNA_E-siliculosus-1a_F_contig1054.391.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1054.391.1 vs. uniprot
Match: D8LLS6_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS6_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 7.270e-22 Identity = 91/116 (78.45%), Postives = 93/116 (80.17%), Query Frame = -3 Query: 1 AASEAGRRESWSXXXXXXXXXXXXXXXXXXXXXXXXPASSXXAVGSSGTGGDIAPARWAAPXXXXXXXXXXXXAAGEAPIQAAGGGRRATRADVSGRNPFAKSGNPFAVSPSAAEG 348
AA+EAGRRES XXXXXXXXXXXXXXXXXXXXXX S VGSSG+GGDIAPARWAAP XXX A E PIQAAGGGRR TRADVSGRNPFAKSGNPFAVSPSAAEG
Sbjct: 283 AAAEAGRRESXXXXXXXXXXXXXXXXXXXXXXXX----SRGGTVGSSGSGGDIAPARWAAPGAXXXAPPARFLAPLEPPIQAAGGGRRTTRADVSGRNPFAKSGNPFAVSPSAAEG 394
BLAST of mRNA_E-siliculosus-1a_F_contig1054.391.1 vs. uniprot
Match: A0A6H5KX10_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX10_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.960e-19 Identity = 53/74 (71.62%), Postives = 56/74 (75.68%), Query Frame = -3 Query: 1 AVGSSGTGGDIAPARWAAPXXXXXXXXXXXXAAGEAPIQAAGGGRRATRADVSGRNPFAKSGNPFAVSPSAAEG 222
AVGSSG+GGDIAPARW AP GE PIQAA GG+R TRADVSGRNPFAKSGNPFAVSPSAA+G
Sbjct: 306 AVGSSGSGGDIAPARWTAP--------------GEPPIQAASGGKRTTRADVSGRNPFAKSGNPFAVSPSAADG 365 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1054.391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1054.391.1 >prot_E-siliculosus-1a_F_contig1054.391.1 ID=prot_E-siliculosus-1a_F_contig1054.391.1|Name=mRNA_E-siliculosus-1a_F_contig1054.391.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=107bp SLRGGGTHRERVAALGERISTGNIGPCRPPPSACRLDGRLTRRQESRRRGback to top mRNA from alignment at E-siliculosus-1a_F_contig1054:5680..6035+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1054.391.1 ID=mRNA_E-siliculosus-1a_F_contig1054.391.1|Name=mRNA_E-siliculosus-1a_F_contig1054.391.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=356bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1054:5680..6035+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1054:5680..6035+ >mRNA_E-siliculosus-1a_F_contig1054.391.1 ID=mRNA_E-siliculosus-1a_F_contig1054.391.1|Name=mRNA_E-siliculosus-1a_F_contig1054.391.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1054:5680..6035+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |