mRNA_E-siliculosus-1a_F_contig1053.385.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI) HSP 1 Score: 657 bits (1695), Expect = 5.090e-212 Identity = 580/730 (79.45%), Postives = 586/730 (80.27%), Query Frame = 1 Query: 46 GVVLEGRSTVWLDGSTLLENSAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISLSGASNLTVSDSSFLDNYYFGTSTVGLGGGVKIIGSYATTTISIADSLFEGNSAIDGGGLYISSDYVLTVSRTVFHDNVAGVFGGGAVLESNGVAALSSSNFTGGFAWNGXXXXXXXGSYVSISDCLFEGNSNRFAGGAIRVEAEAAVSLDGTTFSNNFISSQSGAGSGGAVSVSAGTLTATDCKFENNQAFHDDRYDVETDPLEGGGAVIISDGSN------------ATFLDCNFTLN-----GGAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEATGELDGVAFVGNXXXXXXXXAVFFSLGTNATVTGGVFSSNTATGAGGHVVVADAHTNVELLPDAAA-SGVGTTTATPLVLSGGEAGTDGGAVHAYSGAAVSAVSVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADAYFVGTGXXXXXXXXXXXXXXXRAFTGADVVLEGCVVDGNTAQLGGGVSSVDAXXXXXXXXXXXXXXXXDGGGLRASYLSKVVLXXXXXXXXXXXXXXXXVALDASSDTDNDDLNAANASSALDCRSGAFEGNHAGERGGAVYVTRESVLSFEGCGSFGNSASLGASVYASHSFVTLSEGSVLANDEVPTGAMVYALSTQLVAWNASFSV 2181
GVVLEGRSTVWLDGSTLLE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISLSGASNLTVSDSSFLDNYYFG T GLGGGVKIIGSYATTTISI DSLFEGNSA DGGGLYISSDYVLTVSRTVFHDNVAG FGGGAVLESNGVAALSSSNFTGGFAWN XXXXXXX VSISDCLFEGNSN+FAGGAIRVE EAAVSL GTTFSNNFISSQSGAGSGGAVSVSAGTLTATDC FENNQAFHDDRYDVETDPLEGGGAVIISDGSN AT + FT N GGA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GTNATVTGG+FS+NTAT GGHVV ADAHTNVELLPDAAA SGVGTT ATPLVLSGGEAGTDGGAVHAY G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADAYFVGTG XXXXXXXXXXXXRAFTGADVVLEGCVVDGNTAQLGGGVSSVDA XXXXXXXXXXX DGGGLRASYLSKVVL XXXXXXXXXXXXXXVALDASS TDND+LNAANASSALDCR G FEGNHAGERGGAVYVTRESVLSFEGC SFGNSASLGA LSTQLVAWNASFSV
Sbjct: 187 GVVLEGRSTVWLDGSTLLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISLSGASNLTVSDSSFLDNYYFGDRTFGLGGGVKIIGSYATTTISITDSLFEGNSATDGGGLYISSDYVLTVSRTVFHDNVAGFFGGGAVLESNGVAALSSSNFTGGFAWNXXXXXXXXXXRVSISDCLFEGNSNKFAGGAIRVEEEAAVSLSGTTFSNNFISSQSGAGSGGAVSVSAGTLTATDCNFENNQAFHDDRYDVETDPLEGGGAVIISDGSNVGGALLAEGSSTATLTNVAFTSNQAGVYGGALSIYEESVCLMNASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------GTNATVTGGLFSTNTATDTGGHVVAADAHTNVELLPDAAAASGVGTT-ATPLVLSGGEAGTDGGAVHAYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADAYFVGTGTNFXXXXXXXXXXXXRAFTGADVVLEGCVVDGNTAQLGGGVSSVDASLAXXXXXXXXXXXFTDGGGLRASYLSKVVLDTXXXXXXXXXXXXXXVALDASSGTDNDNLNAANASSALDCRGGTFEGNHAGERGGAVYVTRESVLSFEGCESFGNSASLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTQLVAWNASFSV 884
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE) HSP 1 Score: 619 bits (1596), Expect = 1.800e-195 Identity = 582/746 (78.02%), Postives = 589/746 (78.95%), Query Frame = 1 Query: 46 GVVLEGRSTVWLDGSTLLENSAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISLSGASNLTVSDSSFLDNYYFGTSTVGLGGGVKIIGSYATTTISIADSLFEGNSAIDGGGLYISSDYVLTVSRTVFHDNVAGVFGGGAVLESNGVAALSSSNFTGGFAWNGXXXXXXXGSYVSISDCLFEGNSNRFAGGAIRVEAEAAVSLDGTTFSNNFISSQSGAGSGGAVSVSAGTLTATDCKFENNQAFHDDRYDVETDPLEGGGAVIISDGSNATFLDCNFTLNGGAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEATGELDGVAFVGNXXXXXXXX----------------------------------AVFFSLGTNATVTGGVFSSNTATGAGGHVVVADAHTNVELLPDAAASGVGTTTATPLVLSGGEAGTDGGAVHAYSGAAVSAVSVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADAYFVGTGXXXXXXXXXXXXXXXRAFTGADVVLEGCVVDGNTAQLGGGVSSVDAXXXXXXXXXXXXXXXXDGGGLRASYLSKVVLXXXXXXXXXXXXXXXXVALDASSDTDNDDLNAANASSALDCRSGAFEGNHAGERGGAVYVTRESVLSFEGCGSFGNSASLGASVYASHSFVTLSEGSVLANDEVPTGAMVYALSTQLVAWNASFSV 2181
GVVLEGRSTVWLDGSTLLE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISLSGASNLTVSDSSFL NYYFG T G+GGGVKIIGSYATTTISIADSLFEGNSA DGGGLYISSDY LTVSRTVFHDNVAG FGGGAVLESNGVAALSS NFTGGFAWN XXXXXXX G+TF NNFISSQSGAGSGGA+SVSAGTL TDC FENNQAFHDDRYDVETDPLEGGGAVIISDGSNATFLDCNFTLNGGAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ELDGVAFVGN AVFFSLGTNATVTGG+FSSNTATGAGGHVV ADAHTNVELLPDAAASG T T LVLSGGEAGTDGGAVHA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADAYFVGTG XXXXXXXXXXXXXXRAFTGADVVLEGCVVDGNTA+LGGGVSSVDA XXXXXXXXXXXXX DGGGLRASYLSKVVL XXXXXXXXXXXXXXXVALDASS TDND L+AANASSALDCRSG FEGN AGERGGAVYVTRESVL+FEGCGSFGNSASLGA LSTQLVAWNASFSV
Sbjct: 347 GVVLEGRSTVWLDGSTLLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISLSGASNLTVSDSSFLGNYYFGDRTFGIGGGVKIIGSYATTTISIADSLFEGNSATDGGGLYISSDYALTVSRTVFHDNVAGFFGGGAVLESNGVAALSSCNFTGGFAWNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXGSTFLNNFISSQSGAGSGGAISVSAGTLIGTDCNFENNQAFHDDRYDVETDPLEGGGAVIISDGSNATFLDCNFTLNGGAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELDGVAFVGNSVSGGRINIDTILVSAYKRPVPLNTLRLSRTNVLSPTNISGGAVFFSLGTNATVTGGLFSSNTATGAGGHVVAADAHTNVELLPDAAASGA-ETAETSLVLSGGEAGTDGGAVHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADAYFVGTGTXXXXXXXXXXXXXXRAFTGADVVLEGCVVDGNTAKLGGGVSSVDASLXXXXXXXXXXXXXTDGGGLRASYLSKVVLDXXXXXXXXXXXXXXXVALDASSGTDNDVLSAANASSALDCRSGTFEGNRAGERGGAVYVTRESVLAFEGCGSFGNSASLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTQLVAWNASFSV 1090
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Match: A0A024U8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8U9_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.490e-5 Identity = 52/196 (26.53%), Postives = 79/196 (40.31%), Query Frame = 1 Query: 211 GISLSGASNLTVSDSSFLDNYYFGTSTVGLGGGVKIIGSYATTTISIADSLFEGNSAIDGGGLYISSDYVLTVSRTVFHDNVAGVFGGGAVLESNGVAALSSSNFTGGFAWNGXXXXXXXGSYVSISDCLFEGNSNRFAGGAIRVEAEAAVSLDGTTFSNNFISSQSGAGSGGAVSVSAGTLTATDCKFENNQAFH 798
G+++ + ++ S SF+ N V GG I+ T S+F GN A +G G+++ S + + T +N A + GGG V N V +S S F A +G VS+ + F N F GG + VE G T +N SS G + +A DC NN ++
Sbjct: 5324 GVAVDRSGKISASQCSFMAN-------VADEGGGAIMLLLKTVATVTNHSIFVGNVARNGAGIFMESASKMFLDETEIFENKAALNGGGIVCADNAVLTVSRSAFYKNSAVDGAGLHLSTVMLVSVRNSTFTENKASFRGGGLFVERCETTICQGLTVVSNTASSGGGVFWFHESNNNADVFKCADCSIRNNDIYN 5512
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Match: A0A3D0K0C5_9BACT (Probable pectate lyase C n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D0K0C5_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 2.350e-5 Identity = 64/237 (27.00%), Postives = 96/237 (40.51%), Query Frame = 1 Query: 211 GISLSGASNLTVSDSSFLDNYYFGTSTVGLG-GGVKIIGSYATTTISIADSLFEGNSAIDGGGLYISSDYV--LTVSRTVFHDNVAGVFGGGAVLESNGVAALSSSNFTGGFAWNGXXXXXXXGSYVSISDCLFEGNSNRFAGGAIRVEAEAAVSLDGTTFSNNFISSQSGAGSGGAVSVSAGTLTA--TDCKFENNQAFHDDRYDVETDPLEGGGAV-IISDGSNATFLDCNFTLN 903
GI + G SN+T +D + G+G GG++I+ +A T+++ DS+ EGN + +GG + + L V RT F DNVA GG + A+ + C F GN GGAIR ++ + GT S+N+ +G GG G +T TDC N++ + GG AV + + S F C T N
Sbjct: 138 GIDVKGQSNVTFADGTI----------AGMGEGGIRIL--HAVGTVTVVDSVLEGNRSDEGGAIQSRGSFETKLVVRRTDFIDNVAATHGGAIWIGQRQETAV-------------------------VDTCRFLGNRANTTGGAIRA-GSVSLQVVGTLISDNW----AGIRGGGVALQPDGHVTQKFTDCMVTGNRS----------GSIAGGVAVDLFNLSSRVRFKGCEITDN 322
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Match: A0A2P6MQW3_9EUKA (Protein kinase domain containing protein (Fragment) n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MQW3_9EUKA) HSP 1 Score: 57.8 bits (138), Expect = 7.770e-5 Identity = 45/152 (29.61%), Postives = 70/152 (46.05%), Query Frame = 1 Query: 214 ISLSGA-SNLTVSDSSFLDNYYFGTSTVGLGGGVKIIGSYATTTISIADSLFEGNSAIDGGGLYISSDYVLTVSRTVFHDNVAGVFGGGAVLESNGVAALSSSNFTGGFAWNGXXXXXXXGSYVSISDCLFEGNSNRFAGGAIRVEAEAAVS 666
+S+ G+ + L V S+FL N + G GG + + G+ AT T+S+ DS+F GN A DG +Y+S+ + + RT N A GGG S L + A G S ++++ F NS GGA+ ++ S
Sbjct: 219 LSVQGSMTQLVVYSSAFLGN-----TATGAGGSIWVFGT-ATPTVSVYDSIFNGNKATDGAAVYVSTQTTIQIFRTTVTYNTASSTGGGISSRSPSSVYLEDVDMFHNAASKGAGVYINTPS-LNVTGSRFNYNSATAEGGALHLDITPTAS 363
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Match: A0A2P6MYA3_9EUKA (Protein kinase domain containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MYA3_9EUKA) HSP 1 Score: 57.8 bits (138), Expect = 8.850e-5 Identity = 45/152 (29.61%), Postives = 70/152 (46.05%), Query Frame = 1 Query: 214 ISLSGA-SNLTVSDSSFLDNYYFGTSTVGLGGGVKIIGSYATTTISIADSLFEGNSAIDGGGLYISSDYVLTVSRTVFHDNVAGVFGGGAVLESNGVAALSSSNFTGGFAWNGXXXXXXXGSYVSISDCLFEGNSNRFAGGAIRVEAEAAVS 666
+S+ G+ + L V S+FL N + G GG + + G+ AT T+S+ DS+F GN A DG +Y+S+ + + RT N A GGG S L + A G S ++++ F NS GGA+ ++ S
Sbjct: 914 LSVQGSMTQLVVYSSAFLGN-----TATGAGGSIWVFGT-ATPTVSVYDSIFNGNKATDGAAVYVSTQTTIQIFRTTVTYNTASSTGGGISSRSPSSVYLEDVDMFHNAASKGAGVYINTPS-LNVTGSRFNYNSATAEGGALHLDITPTAS 1058 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1053.385.1 >prot_E-siliculosus-1a_F_contig1053.385.1 ID=prot_E-siliculosus-1a_F_contig1053.385.1|Name=mRNA_E-siliculosus-1a_F_contig1053.385.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=727bp VGCSLEGNRAEIEGGGVVLEGRSTVWLDGSTLLENSAGDQGGGVHGVNATback to top mRNA from alignment at E-siliculosus-1a_F_contig1053:12823..20957+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1053.385.1 ID=mRNA_E-siliculosus-1a_F_contig1053.385.1|Name=mRNA_E-siliculosus-1a_F_contig1053.385.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8135bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1053:12823..20957+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1053:12823..20957+ >mRNA_E-siliculosus-1a_F_contig1053.385.1 ID=mRNA_E-siliculosus-1a_F_contig1053.385.1|Name=mRNA_E-siliculosus-1a_F_contig1053.385.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4362bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1053:12823..20957+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |