mRNA_E-siliculosus-1a_F_contig1053.382.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1053.382.1 vs. uniprot
Match: D8LRF8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF8_ECTSI) HSP 1 Score: 434 bits (1117), Expect = 1.010e-146 Identity = 247/268 (92.16%), Postives = 254/268 (94.78%), Query Frame = 1 Query: 1 QVDVLDSVFTGNFASDTASWSSSVFHAGGALFVSGQAAVSIKASSFTGNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMINNEGPFDVNFTDTVFSDNWSGGNGGGLWAFLTAGNLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLERNEAGAQGGGMAVDGGVLRTAGCGFSGNVAGRGGAIAAAGEDXXSAAVVFVSGGYMRGNSAELSSWNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGF 804
QVDVLDSVFTGNFASD+ASWSSS+ H GGAL+V GQAAVSIK+SSFTGNGAEG XXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMI NEGPFDVNFTDT FSDNWSGGNG GLWAFLTAGNLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLE NEAGAQGGGMA+DGGVLR AGCGFSGNVAGRGGAIAAAGED SAAVVFV GG+MRGNSAEL +W LWYGYGGGLFAQDGAQAVLDGVALDGNSAGF
Sbjct: 251 QVDVLDSVFTGNFASDSASWSSSLSHVGGALYVFGQAAVSIKSSSFTGNGAEGXXXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMIINEGPFDVNFTDTAFSDNWSGGNGAGLWAFLTAGNLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLEGNEAGAQGGGMAIDGGVLRAAGCGFSGNVAGRGGAIAAAGEDDDSAAVVFVRGGFMRGNSAELGAWGLWYGYGGGLFAQDGAQAVLDGVALDGNSAGF 518
BLAST of mRNA_E-siliculosus-1a_F_contig1053.382.1 vs. uniprot
Match: A0A6H5JUM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM3_9PHAE) HSP 1 Score: 412 bits (1060), Expect = 1.250e-133 Identity = 242/268 (90.30%), Postives = 246/268 (91.79%), Query Frame = 1 Query: 1 QVDVLDSVFTGNFASDTASWSSSVFHAGGALFVSGQAAVSIKASSFTGNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMINNEGPFDVNFTDTVFSDNWSGGNGGGLWAFLTAGNLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLERNEAGAQGGGMAVDGGVLRTAGCGFSGNVAGRGGAIAAAGEDXXSAAVVFVSGGYMRGNSAELSSWNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGF 804
QVDVLDSVFTGNFASD ASWSSSV HAGGAL++ GQAAVSIK+SSFTGNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMI NEGPFDVNFTDTV SDNWSGGNGGGLWAFL AGNL LLRTNFSNNAVAYREGFFDVP SHRGGGVWVSG+GEM VQAE CHLE NEA AQGGGMAVDGGVLR A CGFSGNVAGRGGAIAA XX VVFVSGGYMRGNSAEL SWNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGF
Sbjct: 101 QVDVLDSVFTGNFASDMASWSSSVSHAGGALYIVGQAAVSIKSSSFTGNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMIINEGPFDVNFTDTVLSDNWSGGNGGGLWAFLNAGNLILLRTNFSNNAVAYREGFFDVPGSHRGGGVWVSGNGEMTVQAEGCHLEGNEADAQGGGMAVDGGVLRAADCGFSGNVAGRGGAIAAXXXXXXXXXVVFVSGGYMRGNSAELISWNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGF 368 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1053.382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1053.382.1 >prot_E-siliculosus-1a_F_contig1053.382.1 ID=prot_E-siliculosus-1a_F_contig1053.382.1|Name=mRNA_E-siliculosus-1a_F_contig1053.382.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=268bp QVDVLDSVFTGNFASDTASWSSSVFHAGGALFVSGQAAVSIKASSFTGNGback to top mRNA from alignment at E-siliculosus-1a_F_contig1053:996..3455- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1053.382.1 ID=mRNA_E-siliculosus-1a_F_contig1053.382.1|Name=mRNA_E-siliculosus-1a_F_contig1053.382.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2460bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1053:996..3455- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1053:996..3455- >mRNA_E-siliculosus-1a_F_contig1053.382.1 ID=mRNA_E-siliculosus-1a_F_contig1053.382.1|Name=mRNA_E-siliculosus-1a_F_contig1053.382.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1608bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1053:996..3455- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |