mRNA_E-siliculosus-1a_F_contig10523.381.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10523.381.1 vs. uniprot
Match: D8LQT5_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT5_ECTSI) HSP 1 Score: 795 bits (2052), Expect = 6.070e-286 Identity = 438/512 (85.55%), Postives = 446/512 (87.11%), Query Frame = 1 Query: 1 MAQNTPLPAAAPLHDAAGVGDAVAVAGLLKDGADRNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDGRASDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDLFASFGADGPFLTALDLAVENGHLEVVRTLAEAGADVNLLYEDGCDEIPPLVTAAXXXXXXXXXXXXXXXXXXXXFGHDGFSALHQAKDVRVMEVXXXXXXXIEQGITTDYDSHGCDEATPIGWLCLKTHQRFSPLQSVGYGLEVGAAGSSEDEIGRATAMVQLLLSRGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAALIDNGADLDATDWELQDFDADGDVKIRPIHDAARFGDVDILRLLLVAGAGANSLSNFRRGDDLGRWGTPLHVACRYSQPQCVRELLRWGADVWVEEKQSSGEEEXXGEQEKAPCECESCLPQLAGCGKTPAEVIGLRDVVTNEEINARPSDSTTVGDGDEIRRELLWWRRCAVVLLAARLAKRVSADGGTTTG 1536 MAQNTPLPAAAPLHDAAGVGDAVAVA LLKDGADRNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDGRASDE G D+FASFG GP LTALDLAVENGHLEVVRTLAEAGADVNL+YEDG E+PPLVT XXXXXXXXXXXXXXXXXXXX SALHQAKDVRVMEV IEQGITTDYDSHGCDEATPIGWL LKTHQRFSPLQ++GYGLEVGAA SSEDEIGRATAMVQLLL RGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAALIDNGADLDATDWELQDFDADGDVKIRPIHDAARFGDVDILRLLL AGAGANSLSNFRRGDDL RWGTPLHVACRYSQ CVRELLRWGADVW EE+QSSGEE XX KAPCECESCL + AGCGKTPAEVIGLRDVVTN EINARPSDSTTVGDGDEIRRELLWWRRCAVVLLAARLAK+VSADGGTTTG Sbjct: 1 MAQNTPLPAAAPLHDAAGVGDAVAVADLLKDGADRNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDGRASDEDCNDPTPLHEASARGGVEVTKALLKAGAGKDIFASFGTGGPCLTALDLAVENGHLEVVRTLAEAGADVNLIYEDGYAEVPPLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALHQAKDVRVMEVLLNAGADIEQGITTDYDSHGCDEATPIGWLSLKTHQRFSPLQNLGYGLEVGAALSSEDEIGRATAMVQLLLRRGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAALIDNGADLDATDWELQDFDADGDVKIRPIHDAARFGDVDILRLLLGAGAGANSLSNFRRGDDLERWGTPLHVACRYSQLGCVRELLRWGADVWAEERQSSGEEXXXXXXXKAPCECESCLSKSAGCGKTPAEVIGLRDVVTNLEINARPSDSTTVGDGDEIRRELLWWRRCAVVLLAARLAKQVSADGGTTTG 512
BLAST of mRNA_E-siliculosus-1a_F_contig10523.381.1 vs. uniprot
Match: A0A6H5KST3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST3_9PHAE) HSP 1 Score: 768 bits (1984), Expect = 1.260e-274 Identity = 438/589 (74.36%), Postives = 451/589 (76.57%), Query Frame = 1 Query: 1 MAQNTPLPAAAPLHDAAGVGDAVAVAGLLKDGADRNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDGRASDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDLFASFGADGPFLTALDLAVENGHLEVVRTLAEAGADVNLLYEDGCDEIPPLVTAAXXXXXXXXXXXXXXXXXXXXFGHDGFSALHQAKDVRVMEVXXXXXXXIEQGITTDYDSHGCDEATPIGWLCLKTHQRFSPLQSVGYGLEVGAAGSSEDEIGRATAMVQLLLSRGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAALIDNGADLDATDWELQDFDADGDVKIRPIHDAARFGDVDILRLLLVAGAGANSLSNFRRGDDLGRWGTPLHVA----------------------------------CRYSQPQCVRELLRWGADVWVEEKQSSGEEEXXGEQEKAPCECESCLPQLAGCGKTPAEVIGLRDVVTNEEINARPSDSTTVGDGDEIRRELLWWRRCAVVLLAARLAKRVSADGGTTTGVSSANAVQRSQVFADDELLAIAGRMANLGGSRQGAFRHIVTFL 1665 MAQNTPL AAAPLHDAAGVGDAVAVAGLLKD A RNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDGRASDE D+FASFG DGPFLTALDLAVENGHLEVVRTL EAGADVNL+YEDGCDE+PPLVTAA XXXXXXXXXXXXXXXXXXXFGHDGFSALH+AKDVRVMEV IEQGI+TDYDSHGCDEATP+GWLCLKTHQRFSPLQSVGY GAA SSEDEI RATAMV+LLL RGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAAL+D GADLDATDWELQDF +D DVKIRPIHDAARFGDVDILRLLLVAGAGANSLSN R DDL RWGTPLHVA CRYSQ CVRELLRWGAD+W EEKQS XX EK PCECESC AGCGK P EVI LRD VTNEEINARPSDS +LLAARLAK+VSADGG TT SSA V+RSQV ADDELLAIAGRMANLGGSRQGAFRHIVTFL Sbjct: 7 MAQNTPLSAAAPLHDAAGVGDAVAVAGLLKDSAHRNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDGRASDEDCEDPTPLHEASARGGVEVTKALLQAGARKDIFASFGRDGPFLTALDLAVENGHLEVVRTLVEAGADVNLIYEDGCDEVPPLVTAAKXXXXXXXXXXXXXXXXXXXFGHDGFSALHEAKDVRVMEVLLDAGADIEQGISTDYDSHGCDEATPVGWLCLKTHQRFSPLQSVGYECTAGAALSSEDEIERATAMVKLLLRRGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAALVDKGADLDATDWELQDFGSDLDVKIRPIHDAARFGDVDILRLLLVAGAGANSLSNVHRDDDLKRWGTPLHVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACRYSQVGCVRELLRWGADMWAEEKQSGXXXXXXXXXEKVPCECESCFSNSAGCGKIPEEVIALRDAVTNEEINARPSDS---------------------ILLAARLAKQVSADGGATTAASSAKTVKRSQVLADDELLAIAGRMANLGGSRQGAFRHIVTFL 574
BLAST of mRNA_E-siliculosus-1a_F_contig10523.381.1 vs. uniprot
Match: A0A6H5KEN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN5_9PHAE) HSP 1 Score: 593 bits (1529), Expect = 6.110e-208 Identity = 330/394 (83.76%), Postives = 339/394 (86.04%), Query Frame = 1 Query: 1 MAQNTPLPAAAPLHDAAGVGDAVAVAGLLKDGADRNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDGRASDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDLFASFGADGPFLTALDLAVENGHLEVVRTLAEAGADVNLLYEDGCDEIPPLVTAAXXXXXXXXXXXXXXXXXXXXFGHDGFSALHQAKDVRVMEVXXXXXXXIEQGITTDYDSHGCDEATPIGWLCLKTHQRFSPLQSVGYGLEVGAAGSSEDEIGRATAMVQLLLSRGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAALIDNGADLDATDWELQDFDADGDVKIRPIHDAARFGDVDILRLLLVAGAGANSLSNFRRGDDLGRWGTPLHVACR 1182 MAQNTPL AAAPLHDAAGVGDAVAVAGLLKD A RNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDGRASDE D+FASFG DGPFLTALDLAVENGHLEVVRTL EAGADVNL+YEDGCDE+PPLVTAA XXXXXXXXXXXXXXXXXXXFGHDGFSALH+AKDVRVMEV IEQGI+TDYDSHGCDEATP+GWLCLKTHQRFSPLQSVGY GAA SSEDEI RATAMV+LLL RGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAAL+D GADLDATDWELQDF +D DVKIRPIHDAARFGDVDILRLLLVAGAGANSLSNFRRGD L RWGTPLHVACR Sbjct: 7 MAQNTPLSAAAPLHDAAGVGDAVAVAGLLKDSAHRNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDGRASDEDCEDPTPLHEASARGGVEVTKALLQAGARKDIFASFGRDGPFLTALDLAVENGHLEVVRTLVEAGADVNLIYEDGCDEVPPLVTAAKXXXXXXXXXXXXXXXXXXXFGHDGFSALHEAKDVRVMEVLLDAGADIEQGISTDYDSHGCDEATPVGWLCLKTHQRFSPLQSVGYECTAGAALSSEDEIERATAMVKLLLRRGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAALVDKGADLDATDWELQDFGSDLDVKIRPIHDAARFGDVDILRLLLVAGAGANSLSNFRRGDVLQRWGTPLHVACR 400
BLAST of mRNA_E-siliculosus-1a_F_contig10523.381.1 vs. uniprot
Match: D8LQT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT4_ECTSI) HSP 1 Score: 593 bits (1530), Expect = 8.580e-208 Identity = 354/462 (76.62%), Postives = 361/462 (78.14%), Query Frame = 1 Query: 1 MAQNTPLPAAAPLHDAAGVGDAVAVAGLLKDGADRNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDGRASDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDLFASFGADGPFLTALDLAVENGHLEVVRTLAEAGADVNLLYEDGCDEIPPLVTAAXXXXXXXXXXXXXXXXXXXXFGHDGFSALHQAKDVRVMEVXXXXXXXIEQGITTDYDSHGCDEATPIGWLCLKTHQRFSPLQSVGYGLEVGAAGSSEDEIGRATAMVQLLLSRGAKIDSKAGCVGHCLRTGARGPPLSAAVYNGTTAICAALIDNGADLDATDWELQDFDADGDVKIRPIHDAARFGDVDILRLLLVAGAGANSLSNFRRGDDLGRWGTPLHVACRYSQPQCVRELLRWGADVWVEEKQSSGEEEXXGEQE--KAPCECESCLPQLAGCGKTPAEVIGLRDVVT 1380 MAQNTPLPAAAPLHDAAGVGDAVAVA LLKDGADRNARVDREGYSYSDGATALHIAAREDHLSVAV LLAAGAWPD + G D+FASFG GP LTALDLAVENGHLEVVRTLAEAGADVNL+YED E+PPLVTA XXXXXXXXXXXXXXXXXXX FG DGFSALHQAKDVRVMEV IEQGITTDYDSHG W+ T R GAA SSED+I RATAMVQLLL RGAKIDSKAGCVGHCLRTGARGPPLSAAVY+GTTAICAALID GADLDATDWELQDFD D DVKIRPIHDAARF VDILRLLL AGAGANSLSNFRRGDDL RWGTPLHVACRYSQ CVRELLRWGADVW EEKQS GEE XX KAPCECESCLPQ AGCGK PAEVIGLRDVVT Sbjct: 1 MAQNTPLPAAAPLHDAAGVGDAVAVADLLKDGADRNARVDREGYSYSDGATALHIAAREDHLSVAVVLLAAGAWPD---VTKIAKIQLHFTRPPRGGRVEVAKALLKAGAGKDIFASFGTGGPRLTALDLAVENGHLEVVRTLAEAGADVNLIYEDRYVEVPPLVTAXXXXXXXXXXXXXXXXXXXXGFGQDGFSALHQAKDVRVMEVLLNAGADIEQGITTDYDSHGM-------WV---TDWRS------------GAALSSEDDIERATAMVQLLLRRGAKIDSKAGCVGHCLRTGARGPPLSAAVYSGTTAICAALIDKGADLDATDWELQDFDVDSDVKIRPIHDAARFRGVDILRLLLGAGAGANSLSNFRRGDDLERWGTPLHVACRYSQLGCVRELLRWGADVWAEEKQSGGEEXXXXXXXXXKAPCECESCLPQSAGCGKAPAEVIGLRDVVT 437
BLAST of mRNA_E-siliculosus-1a_F_contig10523.381.1 vs. uniprot
Match: D8LI67_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI67_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 1.350e-15 Identity = 163/627 (26.00%), Postives = 215/627 (34.29%), Query Frame = 1 Query: 37 LHDAAGVGDAVAVAGLLKDGA-DRNARVDREGYSYSDGATALHIAAREDHLSVAVALLAAGAWPDGRAS-DEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDLFASFGADGPFLTALDLAVENGHLEVVRTLAEAGADVNLLYED----------GCDEIP-----------------------PLVTAAXXXXXXXXXXXXXXXXXXXXFGHD----------------------------------GFSALHQAKDVRVMEVXXXXXXXIEQGITTDYDSHGCDEATPIGWLCLKTHQRFSPLQSVGYGLEVGAAGSSEDEIGRATAMVQLLLSRGAKIDSKAGCVGHC--------LRTGARGPPLSAAVYNGTTAICAALIDNGADLDATDWELQDFDADGDVKIRPIHDAARFGDVDILRLLLVAGAGANSLSNFRRGDDLGRWGTPLHVACRYSQPQCVRELLRWGADVWVEEKQSSGEEEXXGEQEKAP----------CECESCLPQLA--------GCGKTPAEVIGLRDVVT---------NEEINARPS--------------------DSTTVGDGDEIRR----ELLWWRRCAVVLLAARLAKRVSADGGTTT 1533 LH AA DA + LL+ G D N+RV E + +GATALH+AA++ HL +ALL GA P GR S D +D + D LT L LA GH VV+ L AG + L G + P PL A+ D G + LH A+D +E + Y TP+G C H+ L++ G+ ATA V+ LL GA + + G A P LS A NG I +AL+ GA LD + D DG PIHDA + VD+LRLLL AGA ++ + G W TPLH+ACRY+ +CV ELLRW A + E+ SS G P E P+ G GKTPAEV+GL+++ A PS +T VG+ + IRR E W RR VL+ L ++ +G T Sbjct: 24 LHKAAHRNDAGTITMLLRGGGMDPNSRV--ECPNCDEGATALHLAAQQGHLEAVLALLDGGARPGGRDSTDPGRPRSENNRVVSGSSSPSSSSSEEWDISDSDDVSEQEHDD--LTPLHLACVGGHTAVVQALLSAGEPTDRLASGRKVSDHAAVHGNNAAPXXXXXXXXXXXXXXXXXXXXXXTPLHLASACGAAGAVRALVGAGACVHRREGDCDDXXXXXXXXXXXXXXXXXXXXXXXDINAGDEIGNTPLHVARDAETLEFLLSRGANPNLVAMSRYGG-----GTPLGSYCTLIHR----LETDDRGMR------------NATAKVEALLRYGASVHIRPTTAGDLSFLPHASPATVAAASPILSCAAKNGVPGIVSALL--GAGLDPNER-----DRDG---WAPIHDAVQGDHVDVLRLLLRAGAERDAPTRS------GGW-TPLHLACRYTSVECVVELLRWNASLGPAERPSSFNARAEGSAVHRPGNNETKPIFGVALEDYPPEXXXXXXXXXNGYGKTPAEVVGLKNLAAASTGPAGSGGSGHRADPSLDEXXXXXXXXXXXXXETGDRNTGVGERNAIRRALRREAAWRRRRGAVLVKVCLERQRQLEGAAAT 608 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10523.381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10523.381.1 >prot_E-siliculosus-1a_F_contig10523.381.1 ID=prot_E-siliculosus-1a_F_contig10523.381.1|Name=mRNA_E-siliculosus-1a_F_contig10523.381.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=556bp MAQNTPLPAAAPLHDAAGVGDAVAVAGLLKDGADRNARVDREGYSYSDGAback to top mRNA from alignment at E-siliculosus-1a_F_contig10523:28..2009- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10523.381.1 ID=mRNA_E-siliculosus-1a_F_contig10523.381.1|Name=mRNA_E-siliculosus-1a_F_contig10523.381.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1982bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10523:28..2009- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10523:28..2009- >mRNA_E-siliculosus-1a_F_contig10523.381.1 ID=mRNA_E-siliculosus-1a_F_contig10523.381.1|Name=mRNA_E-siliculosus-1a_F_contig10523.381.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3336bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10523:28..2009- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |