mRNA_E-siliculosus-1a_F_contig1052.380.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1052.380.1 vs. uniprot
Match: D8LG40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG40_ECTSI) HSP 1 Score: 568 bits (1465), Expect = 9.890e-197 Identity = 346/378 (91.53%), Postives = 350/378 (92.59%), Query Frame = 1 Query: 91 MSRSRADFESEEFNEESPLSKKPRLSSGIGDDAFEGLTSYGNGDGGGSTFAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-CKNKKKPWKVHASAGGGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYVCWLSDLMKLSPXXXXXXXXXXXXXXXXXXXXXXXXXXMNSAQRNLLLYGTTRGVEG-DGGEAMAVCDDXXXXXXXXLDQATGGPKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNVRSNDLQEQVEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEV 1218 MSRSRADFESEEFNEESPLSKK RLSSGIGDDAFEGLTSYGNGDGGGSTFAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A CKNKKKPWKVHASAGGGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRA IDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYVCWLSDLMKLSP XXXXXXXXXXXXXXXX MN AQRNLLLYGTTRGVE DGGE MAVCDD LDQATGG KKPSRRGVDVGTGASCIYPLLGA+VAGWSFLATEIDPVSAEWAEKNVRSNDLQE++EVRLVPSPAD GDDEA+PGPLLAALREEDGDFDFSMTNPPFFESADEV Sbjct: 1 MSRSRADFESEEFNEESPLSKKRRLSSGIGDDAFEGLTSYGNGDGGGSTFAINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVCKNKKKPWKVHASAGGGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRAAIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYVCWLSDLMKLSPPSSVSARRHXXXXXXXXXXXXXXXX-MNLAQRNLLLYGTTRGVEEEDGGEGMAVCDDNDDDVDGDLDQATGGAKKPSRRGVDVGTGASCIYPLLGAKVAGWSFLATEIDPVSAEWAEKNVRSNDLQEKIEVRLVPSPADSGDDEAAPGPLLAALREEDGDFDFSMTNPPFFESADEV 377
BLAST of mRNA_E-siliculosus-1a_F_contig1052.380.1 vs. uniprot
Match: W7TD89_9STRA (Methyltransferase 10 domain containing n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TD89_9STRA) HSP 1 Score: 162 bits (411), Expect = 5.740e-41 Identity = 108/292 (36.99%), Postives = 138/292 (47.26%), Query Frame = 1 Query: 406 KMHDANLYRHYRPDFRELAREYPDTFGP---HVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYVCWLSDLMKLSPXXXXXXXXXXXXXXXXXXXXXXXXXXMNSAQRNLLLYGTTRGVEGDGGEAMAVCDDXXXXXXXXLDQATGGPKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNVRSNDLQEQVEVRLVPSPADGGDDEASP------------GPLLAALRE----EDGDFDFSMTNPPFFESADEVRA 1224 K H + YR YRPDF LAR YPDTFG ++ DD A IDW DP + R LT+ +LRHDFGL EWD PL+RLCPPV NRLNYVCW+ DL+ L GG + + RG+DVGTGAS IYPLLG ++ WSFL T+IDP + E A NVR N +++++ ++LV S D + + GP+ AL + + DF M NPPFF S DE+ + Sbjct: 29 KFHQDSKYRGYRPDFAALARLYPDTFGHLVIYLNDD--KSEALIDWKDPISTRALTKTLLRHDFGL-EWDIPLERLCPPVPNRLNYVCWVKDLLSL------------------------------------------------GGSDTS-------------------QSRTGIRGLDVGTGASAIYPLLGCKLHDWSFLGTDIDPEALEAASANVRENHMEDRISLQLV-SRVDYSELSSFSFTALQTGAGSVRGPIQTALDAAGMGSEYELDFVMCNPPFFASLDEIHS 249
BLAST of mRNA_E-siliculosus-1a_F_contig1052.380.1 vs. uniprot
Match: W2PG03_PHYPN (U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PG03_PHYPN) HSP 1 Score: 141 bits (355), Expect = 9.230e-35 Identity = 97/276 (35.14%), Postives = 133/276 (48.19%), Query Frame = 1 Query: 400 GGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTG-RATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYVCWLSDLMKLSPXXXXXXXXXXXXXXXXXXXXXXXXXXMNSAQRNLLLYGTTRGVEGDGGEAMAVCDDXXXXXXXXLDQATGGPKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNVRSNDLQEQVEVRLVPSPADGGDDEASPGPLLAALREEDGD--FDFSMTNPPFFESADEV 1218 G HD N Y+ PDF L +YP+ F ++R+ D RA++ W DP A+RELT+ +L HDFGLR WD P++RLCPP+ NRLNY+ W+ DL+ AQ N + R E G+DVGTGA+CIY LLGA ++ W F+ATEIDPVS E A++N+ SN L+ + ++ + D+ LL L +E + FDF M NPPFF++ E Sbjct: 13 GALAHDRNRYKDNPPDFYALGEQYPE-FKQYLRNVDDARCRASLAWDDPFAVRELTKTLLLHDFGLR-WDIPINRLCPPLPNRLNYLHWIEDLL---------------------------------AQAN---WNGKRQTHQKSTEVAV-------------------------SGIDVGTGANCIYALLGATMSKWKFIATEIDPVSYECAKENITSNQLETLISIKQTHT------DKL----LLEPLEDEPPERKFDFVMCNPPFFDNMKEA 215
BLAST of mRNA_E-siliculosus-1a_F_contig1052.380.1 vs. uniprot
Match: A0A7S2TVK9_9EUKA (U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TVK9_9EUKA) HSP 1 Score: 143 bits (361), Expect = 1.120e-34 Identity = 98/289 (33.91%), Postives = 131/289 (45.33%), Query Frame = 1 Query: 358 KNKKKPWKVHASAGGGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYVCWLSDLMKLSPXXXXXXXXXXXXXXXXXXXXXXXXXXMNSAQRNLLLYGTTRGVEGDGGEAMAVCDDXXXXXXXXLDQATGGPKKPSRRGVDVGTGASCIYPLLGARVA-GWSFLATEIDPVSAEWAEKNVRSNDLQEQVEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEVR 1221 K K K V S+ +MH N + PDF LA +Y D F HV+ +P T R I + DP A+ L R +++ FGL EW+ P+DRLCPP++NRLNY+ W+ DL+KL+ G A AV G D+GTGASCIYPLLG V W F+AT+ID S E A KNV N+L+ ++++R V + ALR+ DG F M NPPFF SA +++ Sbjct: 13 KKKAKGGWVSISSNNARMHPRNPFNGKEPDFSALAAKY-DFFANHVKVNPKTQRPYIKYKDPKAVICLNRALMKDTFGL-EWNVPIDRLCPPISNRLNYILWIQDLLKLNAPLS--------------------------------------------GNASAV-------------------------GFDIGTGASCIYPLLGTAVEKNWRFIATDIDDKSLESARKNVVGNNLETRIDLRKVNRSVR----------IAGALRDSDGPLAFCMCNPPFFASALDIK 220
BLAST of mRNA_E-siliculosus-1a_F_contig1052.380.1 vs. uniprot
Match: UPI001B889072 (RNA N6-adenosine-methyltransferase METTL16-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B889072) HSP 1 Score: 144 bits (364), Expect = 3.500e-34 Identity = 91/273 (33.33%), Postives = 130/273 (47.62%), Query Frame = 1 Query: 409 MHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYVCWLSDLMKLSPXXXXXXXXXXXXXXXXXXXXXXXXXXMNSAQRNLLLYGTTRGVEGDGGEAMAVCDDXXXXXXXXLDQATGGPKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNVRSNDLQEQVEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEVRAI 1227 MH N YR+ +P+F++LA EYP+ F H D DTG+ +D+ DP+A+R LT+ +L+HDF L + D P DRL P V RLNY+ W+ D++ G T EGD RG+D+GTG+SC+YPLLG R+ WSFLATE+DP +A +A NV N ++ ++V+ V + LLAA+++ + F M NPPFF E +A+ Sbjct: 7 MHPRNKYRNKKPNFKDLASEYPE-FAKHTTRDDDTGKVHLDFKDPSALRALTKTLLKHDFQL-DIDLPSDRLVPTVPLRLNYIHWIEDIL-----------------------------------------GDT---EGD------------------------------IRGIDIGTGSSCVYPLLGCRLNNWSFLATEMDPQNAHYATNNVEKNHMENMIKVKKV----------SKGNILLAAVKDSTESYHFCMCNPPFFADHLEAQAV 193
BLAST of mRNA_E-siliculosus-1a_F_contig1052.380.1 vs. uniprot
Match: A0A835YSM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM3_9STRA) HSP 1 Score: 140 bits (354), Expect = 2.870e-33 Identity = 84/207 (40.58%), Postives = 102/207 (49.28%), Query Frame = 1 Query: 598 EWDAPLDRLCPPVANRLNYVCWLSDLMKLSPXXXXXXXXXXXXXXXXXXXXXXXXXXMNSAQRNLLLYGTTRGVEGDGGEAMAVCDDXXXXXXXXLDQATGGPKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNVRSNDLQEQVEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEV 1218 EWD PLDRLCPPV NRLNY+CWLSDL+ L + G +A+A D P R +D+GTGASCIYPLLG R GWSF+AT+ID SA WA +NV N L+ +EVR VP+ A GP+L A+ ++DG FDF MTNPPFF S +E Sbjct: 9 EWDMPLDRLCPPVPNRLNYLCWLSDLLALRK----------------------------------------QSASPGGADAVAADDQ---------------PAGAMVRVLDIGTGASCIYPLLGHRFLGWSFVATDIDAESARWARQNVTRNGLEAAIEVREVPAAT------AERGPVLTAMGDDDGSFDFVMTNPPFFASMEEA 154
BLAST of mRNA_E-siliculosus-1a_F_contig1052.380.1 vs. uniprot
Match: W4FKW2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FKW2_9STRA) HSP 1 Score: 142 bits (358), Expect = 4.370e-33 Identity = 92/270 (34.07%), Postives = 124/270 (45.93%), Query Frame = 1 Query: 409 MHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYVCWLSDLMKLSPXXXXXXXXXXXXXXXXXXXXXXXXXXMNSAQRNLLLYGTTRGVEGDGGEAMAVCDDXXXXXXXXLDQATGGPKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNVRSNDLQEQVEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEV 1218 +H N+YR+ PDF+ LA+ YP + P+V + + G T+ W+DP A RELTR +L DFG+ W PL+RLCPP+ NRLNY+ W+ DL+ S + +D GVD+GTGAS IYPLLG + W FLAT+ID S E+A N+RSN L+ + + V ADG D P + DG F+M NPPFF+S D+ Sbjct: 16 IHPRNMYRN-PPDFKALAKAYP-SLQPYVHES-NIGHTTLKWSDPQAARELTRALLHRDFGITTWHVPLNRLCPPLPNRLNYIHWIEDLILFSQ------------------------------------------------SSYVSTEDAPIW------------------GVDIGTGASVIYPLLGHSLNQWRFLATDIDAESIEYAAANLRSNHLEHVIHLETV---ADGHDASILPTASIQRRCRHDGPVLFTMCNPPFFDSIDQA 213
BLAST of mRNA_E-siliculosus-1a_F_contig1052.380.1 vs. uniprot
Match: A0A7S0HCW6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HCW6_9CRYP) HSP 1 Score: 139 bits (351), Expect = 5.270e-33 Identity = 93/280 (33.21%), Postives = 133/280 (47.50%), Query Frame = 1 Query: 385 HASAGGGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYVCWLSDLMKLSPXXXXXXXXXXXXXXXXXXXXXXXXXXMNSAQRNLLLYGTTRGVEGDGGEAMAVCDDXXXXXXXXLDQATGGPKKPSRRGVDVGTGASCIYPLLGARVA-GWSFLATEIDPVSAEWAEKNVRSNDLQEQVEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEVR 1221 HA +MH N+Y +PDF +LA++YP +F H+ D G++ ++W D A ELT+ +L+ DF + WD P LCPP+ RLNY+ W+ DL L GT VE +++A+ P RGVD+G GA+CIYPLLG R GW FL ++I+ + E A NV+ N L+ +++RL+ + L+ L+EEDG+FDF M NPPFF S DE + Sbjct: 107 HAGDFDNRMHPRNIYFRKQPDFAKLAQKYP-SFSKHMIQQKD-GKSLLNWKDAQAHIELTKTLLQEDFQI-SWDIPPHFLCPPLPQRLNYIHWIEDL----------------------------------------LAGTIE-VETKPADSLAI--------------------PPHVRGVDIGVGANCIYPLLGVRTQPGWKFLGSDINGTALECARANVQRNGLEGSIDLRLM---------DRQKRLLVDLLKEEDGEFDFVMCNPPFFASMDEAK 313
BLAST of mRNA_E-siliculosus-1a_F_contig1052.380.1 vs. uniprot
Match: A0A7S4PMX9_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PMX9_GUITH) HSP 1 Score: 138 bits (348), Expect = 1.650e-32 Identity = 95/280 (33.93%), Postives = 130/280 (46.43%), Query Frame = 1 Query: 385 HASAGGGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTGRATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYVCWLSDLMKLSPXXXXXXXXXXXXXXXXXXXXXXXXXXMNSAQRNLLLYGTTRGVEGDGGEAMAVCDDXXXXXXXXLDQATGGPKKPSRRGVDVGTGASCIYPLLGARVA-GWSFLATEIDPVSAEWAEKNVRSNDLQEQVEVRLVPSPADGGDDEASPGPLLAALREEDGDFDFSMTNPPFFESADEVR 1221 HA +MH N+Y +P+F ELA++YP +F H+ D G++ ++W D A ELT+ +L+ DF + W P D LCPP+ RLNY+ W+ DL L G VE ++ + P RGVD+G GASCIYPLLG R GW FL ++I+ S E A +NV+ N L+ +EVRL+ + L+ L+EEDG+FDF M NPPFF S E R Sbjct: 89 HAGDFDDRMHPRNIYFKCQPNFAELAKKYP-SFSKHMIQQ-DDGKSFLNWKDVQAHVELTKTLLQEDFKI-SWSIPPDFLCPPIPQRLNYIHWIEDL----------------------------------------LAGPVE-VETKPAHSLKI--------------------PPQARGVDIGVGASCIYPLLGVRSQPGWKFLGSDINKSSLESARENVKRNGLEGNIEVRLMDN---------KKRLLVDLLKEEDGEFDFVMCNPPFFSSMAEAR 295
BLAST of mRNA_E-siliculosus-1a_F_contig1052.380.1 vs. uniprot
Match: W2HX29_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2HX29_PHYPR) HSP 1 Score: 140 bits (352), Expect = 2.660e-32 Identity = 97/276 (35.14%), Postives = 132/276 (47.83%), Query Frame = 1 Query: 400 GGKMHDANLYRHYRPDFRELAREYPDTFGPHVRDDPDTG-RATIDWADPAAMRELTRVMLRHDFGLREWDAPLDRLCPPVANRLNYVCWLSDLMKLSPXXXXXXXXXXXXXXXXXXXXXXXXXXMNSAQRNLLLYGTTRGVEGDGGEAMAVCDDXXXXXXXXLDQATGGPKKPSRRGVDVGTGASCIYPLLGARVAGWSFLATEIDPVSAEWAEKNVRSNDLQEQVEVRLVPSPADGGDDEASPGPLLAALREEDGD--FDFSMTNPPFFESADEV 1218 G HD N Y+ PDF L +YP+ F ++R+ D RA++ W DP A+RELT+ +L HDFGLR WD P++RLCPP+ NRLNY+ W+ DL+ AQ N + R E G+DVGTGA+CIY LLGA + W F+ATEIDPVS E A++N+ SN L+ + ++ + D+ LL L +E + FDF M NPPFF++ E Sbjct: 859 GALAHDRNRYKDNPPDFYALGEQYPE-FKQYLRNVDDARCRASLAWDDPFAVRELTKTLLLHDFGLR-WDIPINRLCPPLPNRLNYLHWIEDLL---------------------------------AQAN---WNGKRQTHQKSTEVAV-------------------------SGIDVGTGANCIYALLGATMNKWKFIATEIDPVSYECAKENITSNQLETLISIKQTHT------DKL----LLEPLEDEPPERKFDFVMCNPPFFDNMKEA 1061 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1052.380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1052.380.1 >prot_E-siliculosus-1a_F_contig1052.380.1 ID=prot_E-siliculosus-1a_F_contig1052.380.1|Name=mRNA_E-siliculosus-1a_F_contig1052.380.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=380bp MSRSRADFESEEFNEESPLSKKPRLSSGIGDDAFEGLTSYGNGDGGGSTFback to top mRNA from alignment at E-siliculosus-1a_F_contig1052:34647..37848+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1052.380.1 ID=mRNA_E-siliculosus-1a_F_contig1052.380.1|Name=mRNA_E-siliculosus-1a_F_contig1052.380.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3202bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1052:34647..37848+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1052:34647..37848+ >mRNA_E-siliculosus-1a_F_contig1052.380.1 ID=mRNA_E-siliculosus-1a_F_contig1052.380.1|Name=mRNA_E-siliculosus-1a_F_contig1052.380.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2280bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1052:34647..37848+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |