mRNA_E-siliculosus-1a_F_contig10510.374.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10510.374.1 vs. uniprot
Match: D7FMV5_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV5_ECTSI) HSP 1 Score: 374 bits (961), Expect = 5.670e-122 Identity = 293/341 (85.92%), Postives = 302/341 (88.56%), Query Frame = 2 Query: 8 VQDVKEHLRSLPERYALTVSPEDVLDHMALFAAVSAAAAETATQKHASSTSSASAQEESLGAEPPTVRVVARPSPLALSSSHPAAAGDGEGGVPCGSGLAGVGRAYSLTVACRQSPLLLGAISSSLRSAGASCLDVDVVSTTRTTA-TRSYGLSLARLEVRVIGGPGLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMPRRLEGLLSSSIAAALLLAGDEGEGRSGXXXXXXXXXXX-GAGEREGDADIELLELAGRGRFSRTYRARWRGSTVAVKTLELPPEVDREHEAAGAEIVGDGDGSRAVVVAEFEREL 1024
+++VKEHLRSLPERYALTVSPEDVL+HMALFAAVSAAAAETATQKHASS+SS SAQ+ESLGAEPPTVRVVARPSPLALSSSHPA AGDGEGG+ CGSGLAGVGRAY LTVACRQSPLLLGAISSSLRSAGASCLDVDVVSTTRTTA TRS GL+LARLEVRVIGG GLTA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LE L AG E XXXXXXXXXXX GAGEREG ADIELLELAG+GRFSRTYRARWRGSTVAVKTLELPPEVDRE EAAGAEIVGDG GSRAVVVAEFEREL
Sbjct: 82 LEEVKEHLRSLPERYALTVSPEDVLEHMALFAAVSAAAAETATQKHASSSSSDSAQDESLGAEPPTVRVVARPSPLALSSSHPAVAGDGEGGMSCGSGLAGVGRAYRLTVACRQSPLLLGAISSSLRSAGASCLDVDVVSTTRTTAVTRSCGLTLARLEVRVIGGLGLTAVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----LEDLXXXXXXXXXXXAGGEXXXXXXXXXXXXXXXXXDGAGEREGKADIELLELAGKGRFSRTYRARWRGSTVAVKTLELPPEVDREQEAAGAEIVGDGGGSRAVVVAEFEREL 417
BLAST of mRNA_E-siliculosus-1a_F_contig10510.374.1 vs. uniprot
Match: A0A6H5KIL9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL9_9PHAE) HSP 1 Score: 204 bits (520), Expect = 5.660e-56 Identity = 239/532 (44.92%), Postives = 258/532 (48.50%), Query Frame = 2 Query: 8 VQDVKEHLRSLPERYALTVSPEDVLDHMALFAAVSAAAAETATQKHASSTSSASAQEESLGAEPPTVRVVARPSPLALSSSHPAAAGDGEGGVPCGSGLAGVGRAYSLTVACRQSPLLLGAISSSLRSAGA-----------------------------------------------------------------------------------------------------------------------------------------------SCLDVDVVSTTRTTATRSYGLSLARLEVRVIGGPGLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMPRRLEG--LLSSSIAAALLLAGDEGEGRSGXXXXXXXXXXX---------------------GAGE-------------REGDA--------------DIELLELAGRGRFSRTYRARWRGSTVAVKTLELPPEVDREHEAAGAEIVGDGDGSRAVVVAEFEREL 1024
+++VKEHLRSLPERYALTVSPEDVLDHMA FAAVSAAAAETAT+KH SS+SSASAQ+ SLG EPP VRVVARPS LALSSS PAAAGDGEGG+ C SGLAGVGRAYSLTVAC QSPLLLGAISSSL+S GA C D + T + A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E R +G L+ + A AL G+ GXXXXXXXXXXX GA + +GD+ DIELLELAG+GRFSRTYRARWR STVAVKTLELPPEVDRE +AAGAEIVGDG GSRAVVVAEFEREL
Sbjct: 44 LEEVKEHLRSLPERYALTVSPEDVLDHMAHFAAVSAAAAETATRKHVSSSSSASAQDRSLGEEPPLVRVVARPSVLALSSSEPAAAGDGEGGMSCESGLAGVGRAYSLTVACLQSPLLLGAISSSLQSTGAVLSPEGGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEEEVXXXXXXXXXXXXDGAGEREGEAVSAEPPPAGAKRERLGRSGRVPDGAAPGDGXXXXXXXXXXXXGQCSDGGFSRSQPLATTTPRXXXXXXXXXXXVXXXXXXTADYAGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGWRWGNREPLARRQGCFFLAEADANALGSNGNSDASHFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKNGANDSAFFSPCTSSEIGNDGDSTHGGDCRYSTIPPEDIELLELAGKGRFSRTYRARWRRSTVAVKTLELPPEVDREQDAAGAEIVGDGGGSRAVVVAEFEREL 575 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10510.374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10510.374.1 >prot_E-siliculosus-1a_F_contig10510.374.1 ID=prot_E-siliculosus-1a_F_contig10510.374.1|Name=mRNA_E-siliculosus-1a_F_contig10510.374.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=174bp PHCSGRKGAPPVTAGEVRPNREPGGRAGSHGPLRRGERRRCRNRYSETRLback to top mRNA from alignment at E-siliculosus-1a_F_contig10510:133..2150- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10510.374.1 ID=mRNA_E-siliculosus-1a_F_contig10510.374.1|Name=mRNA_E-siliculosus-1a_F_contig10510.374.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2018bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10510:133..2150- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10510:133..2150- >mRNA_E-siliculosus-1a_F_contig10510.374.1 ID=mRNA_E-siliculosus-1a_F_contig10510.374.1|Name=mRNA_E-siliculosus-1a_F_contig10510.374.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10510:133..2150- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |