mRNA_E-siliculosus-1a_F_contig1051.370.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1051.370.1 vs. uniprot
Match: D8LAW9_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW9_ECTSI) HSP 1 Score: 686 bits (1771), Expect = 7.260e-243 Identity = 415/460 (90.22%), Postives = 421/460 (91.52%), Query Frame = 3 Query: 45 QQVALLPVLAAALLASVTAGRSGGGPVAPALL--QPTTQVSTXXXXXXXXXGGLLEENTQHAVGKEKVAQQHALHTSSPKPRQXXXXXXXXXXXXXXXXXFQRRRW-GTGRGNPQKPGIMGGEATERRSPFAKLAGVGDGLRARARRLLVAEVEERQKHDAGVPRRRQGFGRRDRESLAFGNFGARKQRVKEEEEEAISAEMLALQAENDASVEAVLAVIESDGWEHVTEKSGVVVVRKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPKEEAAAAKKQKVAG 1415
Q VALLPVLAAALLASVTAGRSGGGPVAPALL QPT+QVST GGLLEENTQHAVGKEKVA+QHALHTSSP+PRQXXXXXXXXXXXXXXXXX GTGRG+PQ+PGIMGGEATERRSPFAKLAGVGDGLRARARRLLVAEVE RQKHDAGVPRRRQGFGRR RESLAFGNFGARKQ VKEEE E ISAEMLALQAENDASVEAVLAVIESDGWE VTEKSGVVVVRKFVXXXXXXXXXXXXXX GIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMV+NRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPKEEAAAAKKQKVAG
Sbjct: 49 QHVALLPVLAAALLASVTAGRSGGGPVAPALLHVQPTSQVSTSSG------GGLLEENTQHAVGKEKVARQHALHTSSPQPRQXXXXXXXXXXXXXXXXXXXXXXXRGTGRGDPQQPGIMGGEATERRSPFAKLAGVGDGLRARARRLLVAEVEGRQKHDAGVPRRRQGFGRRGRESLAFGNFGARKQWVKEEEGEVISAEMLALQAENDASVEAVLAVIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXR-------------GIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPKEEAAAAKKQKVAG 489
BLAST of mRNA_E-siliculosus-1a_F_contig1051.370.1 vs. uniprot
Match: A0A6H5JSI0_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI0_9PHAE) HSP 1 Score: 576 bits (1485), Expect = 1.770e-200 Identity = 340/462 (73.59%), Postives = 348/462 (75.32%), Query Frame = 3 Query: 30 MAPLQQQVALLPVLAAALLASVTAGRSGGGPVAPALLQPTTQVSTXXXXXXXXXGGLLEENTQHAVGKEKVAQQHALHTSSPKPRQXXXXXXXXXXXXXXXXXFQRRRWGTGRGNPQKPGIMGGEATERRSPFAKLAGVGDGLRARARRLLVAEVEERQKHDAGVPRRRQGFGRRDRESLAFGNFGARKQRVKEEEEEAISAEMLALQAENDASVEAVLAVIESDGWEHVTEKSGVVVVRKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPKEEAAAAKKQKVAG 1415
MAPLQQ VALLPVLAAALL SVTAGRSGGGPVAPALLQPT+QVST GGLLEE QH GKEK Q L S K R FQRRRW GRGN Q+PGIMGG++TER SPFAKLAGVGDGLRARARRLLVAE+E RQKHDAG PRRRQGFGRR RESLAFGNFGARKQ VKEEEEE ISAEMLA W S + XXXXXXX E AAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVP+EE AAAKK+ VAG
Sbjct: 1 MAPLQQHVALLPVLAAALLVSVTAGRSGGGPVAPALLQPTSQVSTSTSTGSV--GGLLEEKNQHPAGKEKEEQPLRL---SQKRR------------------FQRRRWRMGRGNAQQPGIMGGKSTERSSPFAKLAGVGDGLRARARRLLVAEMEGRQKHDAGAPRRRQGFGRRSRESLAFGNFGARKQWVKEEEEEVISAEMLARTMR---------------AWTRCWPSSSPMDGNMLPKSPASSSSGNSSHPLPRHAPSXXXXXXXXXXXEEAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPREEVAAAKKKNVAG 424
BLAST of mRNA_E-siliculosus-1a_F_contig1051.370.1 vs. uniprot
Match: A0A835YQ35_9STRA (START domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ35_9STRA) HSP 1 Score: 215 bits (547), Expect = 2.070e-63 Identity = 104/158 (65.82%), Postives = 124/158 (78.48%), Query Frame = 3 Query: 888 AMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANS 1361
A GTL A A DL+ LF N+RVHEYNDNC +VRDLE +S +K++WA +PR+ PFKARDFVT V Y TL DGT+ VVNRPV H AA K YVRAEILIATN+MR N DP KTDF++V H+NPGG+ADS +GA +VN LCA+AP+ LL ALER+ANS
Sbjct: 2 ARGTLAAHAEDLFALFQSNDRVHEYNDNCADVRDLEVVSQHSKITWARSPRFGPFKARDFVTVVSYTTLADGTLAVVNRPVNHAAAPATKDYVRAEILIATNMMRANAHDPRKTDFVTVAHVNPGGVADSTLGANVVNMLCAQAPLKLLQALERAANS 159
BLAST of mRNA_E-siliculosus-1a_F_contig1051.370.1 vs. uniprot
Match: A0A7S2RES9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES9_9STRA) HSP 1 Score: 202 bits (515), Expect = 1.870e-56 Identity = 102/236 (43.22%), Postives = 149/236 (63.14%), Query Frame = 3 Query: 660 NDASVEAVLAVIESDGWEHVTEKSGVVVVRKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAP 1367
N A+V+++LAV+ GW V+ + +R ++ D+ AAAKF+CVKA L+A D+YKLFLDN +VHEYN++C+++ D+ER+S DTKV+W+ T + PFK RDFVT VHYR DGT+MV+NRP HP ++ RAE+L+A N+MRP + D SKT+F +TH+NPGG+ ++ +GA IVN++C++ PV+ + LER+A S P
Sbjct: 82 NQANVDSMLAVVRGAGWRQVSSTNDHNRIRVYLKSVTPGTHLETEA-----------------ADDVAAAKFSCVKATAILNASPHDVYKLFLDNSQVHEYNEHCQKLEDVERVSKDTKVAWSVTAPFGPFKPRDFVTMVHYRREPDGTLMVLNRPCNHPDRPPVPQFQRAELLLAGNVMRPVQGDKSKTEFTMITHVNPGGVVNNALGAAIVNRICSQGPVDFIRRLERAAQSHP 300
BLAST of mRNA_E-siliculosus-1a_F_contig1051.370.1 vs. uniprot
Match: A0A7S3UPT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPT8_HETAK) HSP 1 Score: 203 bits (516), Expect = 7.520e-56 Identity = 111/243 (45.68%), Postives = 155/243 (63.79%), Query Frame = 3 Query: 648 LQAENDASVEAVLA-VIESDGWEHVTEKSGVVVVRKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGK-KYVRAEILIATNIMRPNREDP-SKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAP 1367
L A+N V+ +L+ V + +GW V E+ G+ V +KF+ + E AAKFA VKA GT++A AS +Y+LFLDN RVHEYN C +V+DL LS+DTKV+WAC+PR+ P KARDF T VH R L DGT +VVNRP H A R +Y+R+E+LIA ++MRPNR+DP +KTDF +TH+N GGI ++ A ++N+LCA +P++L+ LE++A+ P
Sbjct: 149 LDAQNQRDVDRLLSEVTDDEGWGLVVERQGIKVWKKFLSPGRHSSLRDGESSSITAYDEQEQAALAAM--EERAAKFAAVKAAGTINAPASSIYRLFLDNSRVHEYNSLCHKVKDLAYLSEDTKVTWACSPRFGPVKARDFCTVVHCRRLRDGTCVVVNRPAFHRGALRSDPQYIRSELLIAGHVMRPNRKDPENKTDFYVMTHVNLGGICETPPVAALINRLCASSPISLMKNLEKAASHQP 389
BLAST of mRNA_E-siliculosus-1a_F_contig1051.370.1 vs. uniprot
Match: D8LLJ0_ECTSI (START domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ0_ECTSI) HSP 1 Score: 201 bits (512), Expect = 1.820e-53 Identity = 136/328 (41.46%), Postives = 181/328 (55.18%), Query Frame = 3 Query: 432 KLAGVGDGLRARARRLLVAEVEERQKHDAGVPRRRQGFGRRDRESLAFGNFGARKQRVKEEEEEAISAEMLALQAENDASVEAVLAVIESDGWEHVTEKSGVVVVRKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-----------------IVDEGAAAK---FACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 1355
++AG + LR R R L + + ++Q D G G G G K +E EA +M LQ D V+ V+ V+ DGWE V E+ GVVV R+++ XXXXXXXX + D+ +K FACVKA L +Y LF DN RV EYN++C+EV+DLE LS D+K++WA + R PFKARDF T VH+RTL DGT+ V++PVEHPAA R +YVR+EIL+A N MRP DPS+T+F+ VTH+NPGG A++R GA +VN LC +PV + LE +A
Sbjct: 255 RIAGCAELLRRRGRELFLLGLRKKQNPD--------GLG-------GEGKLG------KGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAXXXXXXXXQAAGVPKAEASSAFVGGRVEGSADDSVPVGDDSGKSKPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAA 561
BLAST of mRNA_E-siliculosus-1a_F_contig1051.370.1 vs. uniprot
Match: A0A6H5J623_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J623_9PHAE) HSP 1 Score: 202 bits (514), Expect = 2.140e-53 Identity = 128/328 (39.02%), Postives = 173/328 (52.74%), Query Frame = 3 Query: 432 KLAGVGDGLRARARRLLVAEVEERQKHDAGVPRRRQGFGRRDRESLAFGNFGARKQRVKEEEEEAISAEMLALQAENDASVEAVLAVIESDGWEHVTEKSGVVVVRKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------GIVDEGAAA----------KFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 1355
++AG + LR R R L + + +RQ D G G + L G G ++R +M LQ D V+ V+ V+ DGWE V E+ GVVV R+++ G D+ A +FACVKA L +Y LF DN RV EYN++C+EV+DLE LS D+K++WA + R PFKARDF T VH+RTL DGT+ V++PVEHPAA R +YVR+EIL+A N MRP DPS+T+F+ VTH+NPGG A++R GA +VN LC +PV + LE +A
Sbjct: 222 RIAGCAELLRRRGRELFLLGLRKRQNPD--------GSGG---DKLGMGKEGEAERR-----------KMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAPAAPAAHAQAAGVPKAEAYSASVGGRVEGSADDPAPVGEDSGKFRPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAA 527
BLAST of mRNA_E-siliculosus-1a_F_contig1051.370.1 vs. uniprot
Match: I2CRQ3_NANGC (Lipid transfer protein 5-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRQ3_NANGC) HSP 1 Score: 178 bits (452), Expect = 1.530e-49 Identity = 83/144 (57.64%), Postives = 111/144 (77.08%), Query Frame = 3 Query: 870 KFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVN 1301
+FACVKA+G +DA ++ LFLD+ RV EYN++C+E++D++ LS +TKV+W+ + RY PFKARDF T VHYR LEDG ++VVNR EH A R KYVR+EIL+A NIMRP+ DP+KT +++THINPGG DS+ GA +VN
Sbjct: 16 RFACVKAVGVVDAPVDRVFDLFLDSARVGEYNEHCREIQDIDTLSANTKVTWSASGRYGPFKARDFCTVVHYRRLEDGRLVVVNRAAEHVRAPRSDKYVRSEILLAGNIMRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVN 159
BLAST of mRNA_E-siliculosus-1a_F_contig1051.370.1 vs. uniprot
Match: A0A7S1HKH9_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1HKH9_HEMAN) HSP 1 Score: 179 bits (455), Expect = 7.140e-49 Identity = 94/239 (39.33%), Postives = 139/239 (58.16%), Query Frame = 3 Query: 645 ALQAENDASVEAVLAVIESDGWEHVTEKSGVVVVRKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRP--VEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 1355
A+Q N+ + + V+ D WEHV GV V RK I D KF C+KA+ T++AR D+Y L D +RV EYND C +L LSDDT+++WAC+ +Y PFKARDF+T VH+R + DGT++V+++ +E ++ G YVR E+L+A N+MRP+ DP+KT+F ++ H+NPGG AD+ +G+++VN +C PVN + LE +A
Sbjct: 21 AVQTHNNELIGRLFNVMGGDDWEHVLCLGGVNVYRKR------------------------------ITDVPGGEKFYCIKAVRTINARPIDVYDLLKDPQRVSEYNDECALTEELPPLSDDTRLTWACSKKYGPFKARDFITRVHHRKMTDGTLVVMSQSEDIEWERSQPGTDYVRTEVLLAGNVMRPDPTDPTKTEFTTIAHVNPGGAADTPLGSRLVNHICTHGPVNFINKLEIAA 229
BLAST of mRNA_E-siliculosus-1a_F_contig1051.370.1 vs. uniprot
Match: A0A6U4ZLH7_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4ZLH7_HEMAN) HSP 1 Score: 177 bits (450), Expect = 4.610e-48 Identity = 87/176 (49.43%), Postives = 118/176 (67.05%), Query Frame = 3 Query: 858 GAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLV----ALERSANSAPVP 1373
G A+KF CVKA LDA + +Y LF+DN RV EYN+ CK++RDLE + TKV+W+ + R PFK RDFVT VHYRTL D T++VVNR +HPAA + +Y+R EI++ N+M+P DP KT F +TH+NPGG+A +R+G I+N A P++ + AL+R A P P
Sbjct: 33 GEASKFLCVKAEAVLDASPAQVYTLFVDNTRVREYNEFCKQIRDLEYKNSTTKVTWSASARIGPFKERDFVTRVHYRTLPDQTLLVVNRAEDHPAAPQTDRYLRMEIVLGGNVMKPVPSDPEKTMFTMLTHVNPGGVAGTRMGTMIMNSAAANGPISFVQGLRDALKRDAAGIPPP 208 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1051.370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1051.370.1 >prot_E-siliculosus-1a_F_contig1051.370.1 ID=prot_E-siliculosus-1a_F_contig1051.370.1|Name=mRNA_E-siliculosus-1a_F_contig1051.370.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=463bp MAPLQQQVALLPVLAAALLASVTAGRSGGGPVAPALLQPTTQVSTSTSTSback to top mRNA from alignment at E-siliculosus-1a_F_contig1051:7806..12623- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1051.370.1 ID=mRNA_E-siliculosus-1a_F_contig1051.370.1|Name=mRNA_E-siliculosus-1a_F_contig1051.370.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4818bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1051:7806..12623- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1051:7806..12623- >mRNA_E-siliculosus-1a_F_contig1051.370.1 ID=mRNA_E-siliculosus-1a_F_contig1051.370.1|Name=mRNA_E-siliculosus-1a_F_contig1051.370.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2778bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1051:7806..12623- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |