mRNA_E-siliculosus-1a_F_contig1050.365.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1050.365.1 vs. uniprot
Match: D7FZB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB9_ECTSI) HSP 1 Score: 140 bits (352), Expect = 1.730e-37 Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 Query: 43 MGRDCKEAARALYACMKKTQCMKDGGRLKECLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 243
MGRDCKEAARALYACMKKTQCMKDGGRLK+CLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF
Sbjct: 1 MGRDCKEAARALYACMKKTQCMKDGGRLKDCLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 67
BLAST of mRNA_E-siliculosus-1a_F_contig1050.365.1 vs. uniprot
Match: A0A835ZA98_9STRA (Cytochrome c oxidase assembly protein PET191 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA98_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.060e-18 Identity = 41/67 (61.19%), Postives = 53/67 (79.10%), Query Frame = 1 Query: 43 MGRDCKEAARALYACMKKTQCMKDGGRLKECLKTSDREFCRQDHQSFFECKRGQLDMRTRIRGERSF 243
M DCKE ARAL ACM++++CM+ GG+L+ECLKT + C +S+FEC+RGQLDMRTRIRG RS+
Sbjct: 1 MSSDCKEHARALLACMQESKCMQGGGKLRECLKTDEVHQCELQRRSYFECRRGQLDMRTRIRGPRSY 67
BLAST of mRNA_E-siliculosus-1a_F_contig1050.365.1 vs. uniprot
Match: A0A482S5P5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5P5_9ARCH) HSP 1 Score: 71.6 bits (174), Expect = 3.280e-12 Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 1 Query: 43 MGRDCKEAARALYACMKKTQCMKDGGRLKECLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRGERSF 243
MG+ CK+ AR L CM +TQC++ G +KEC+KT + E C Q +++FECKRG LDMR RIRG + +
Sbjct: 1 MGKSCKDIARTLLDCMAETQCVQQGQDVKECMKTMEGEDRCGQLRRAYFECKRGSLDMRYRIRGPKVY 68
BLAST of mRNA_E-siliculosus-1a_F_contig1050.365.1 vs. uniprot
Match: K3X2Q5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2Q5_GLOUD) HSP 1 Score: 70.1 bits (170), Expect = 1.540e-11 Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1 Query: 43 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRG 231
MG+ C++ A AL CM +CM DG R LK+CLK + CR Q++FECKRGQLDMRTRIRG
Sbjct: 1 MGKSCRDMAEALRDCMVTEECMSDGTRTLKQCLKMKEYAHECRGYRQAYFECKRGQLDMRTRIRG 65
BLAST of mRNA_E-siliculosus-1a_F_contig1050.365.1 vs. uniprot
Match: A0A3R7MTX6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MTX6_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 9.360e-11 Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1 Query: 43 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRG 231
MG+ C++AA AL CM + +CM DG R LK+CL + C++ ++FECKRGQLDMRTRIRG
Sbjct: 1 MGKACRDAAEALRDCMMEQECMADGTRTLKQCLHERTYSYECKEFRVAYFECKRGQLDMRTRIRG 65
BLAST of mRNA_E-siliculosus-1a_F_contig1050.365.1 vs. uniprot
Match: A0A2D4CB04_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CB04_PYTIN) HSP 1 Score: 66.6 bits (161), Expect = 2.530e-10 Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1 Query: 43 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSDREF-CRQDHQSFFECKRGQLDMRTRIRG 231
MG+ C++ A L CM + +CM DG R LK+CL+ + CR+ ++FECKRGQLDMRTRIRG
Sbjct: 1 MGKSCRDMAELLRDCMVEEECMSDGTRTLKQCLRMKEYAHECRELRYAYFECKRGQLDMRTRIRG 65
BLAST of mRNA_E-siliculosus-1a_F_contig1050.365.1 vs. uniprot
Match: A0A8K1CG31_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG31_PYTOL) HSP 1 Score: 66.2 bits (160), Expect = 3.360e-10 Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1 Query: 43 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSDREF---CRQDHQSFFECKRGQLDMRTRIRG 231
MG+ C++ A L CM + +CM+DG R LK+CLK RE+ C + ++FECKRGQLDMRTRIRG
Sbjct: 1 MGKSCRDMAELLRDCMVEQECMRDGTRTLKQCLKM--REYAHECSELRYAYFECKRGQLDMRTRIRG 65
BLAST of mRNA_E-siliculosus-1a_F_contig1050.365.1 vs. uniprot
Match: A0A024TWV1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TWV1_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 5.670e-10 Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 Query: 43 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSD-REFCRQDHQSFFECKRGQLDMRTRIRG 231
MG+ C++ A AL CM + +CM DG + LKECL+ + R C++ ++FECKRGQ+DMR RIRG
Sbjct: 1 MGKACRDMAEALRDCMCEKECMSDGTKTLKECLRMEEFRHECKEYRLAYFECKRGQIDMRQRIRG 65
BLAST of mRNA_E-siliculosus-1a_F_contig1050.365.1 vs. uniprot
Match: A0A6G0XTT3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTT3_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 7.750e-10 Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 1 Query: 43 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSD-REFCRQDHQSFFECKRGQLDMRTRIRG 231
MG+ C++ A AL CM + +CM DG + LK+CL+ + R C + ++FECKRGQLDMR RIRG
Sbjct: 1 MGKSCRDMAEALRDCMVEKECMSDGTKTLKQCLQLEEFRHECHEYRVAYFECKRGQLDMRQRIRG 65
BLAST of mRNA_E-siliculosus-1a_F_contig1050.365.1 vs. uniprot
Match: A0A067BWW3_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BWW3_SAPPC) HSP 1 Score: 63.9 bits (154), Expect = 1.980e-9 Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1 Query: 43 MGRDCKEAARALYACMKKTQCMKDGGR-LKECLKTSD-REFCRQDHQSFFECKRGQLDMRTRIRG 231
MG+ C++ A L CM + +CM DG R LK CLK + + C++ ++FECKRGQ+DMR RIRG
Sbjct: 1 MGKSCRDMAEQLRDCMLEMECMSDGKRTLKTCLKLDEYKHECKEYRYAYFECKRGQIDMRQRIRG 65 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1050.365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1050.365.1 >prot_E-siliculosus-1a_F_contig1050.365.1 ID=prot_E-siliculosus-1a_F_contig1050.365.1|Name=mRNA_E-siliculosus-1a_F_contig1050.365.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=68bp MGRDCKEAARALYACMKKTQCMKDGGRLKECLKTSDREFCRQDHQSFFECback to top mRNA from alignment at E-siliculosus-1a_F_contig1050:31138..33374+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1050.365.1 ID=mRNA_E-siliculosus-1a_F_contig1050.365.1|Name=mRNA_E-siliculosus-1a_F_contig1050.365.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2237bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1050:31138..33374+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1050:31138..33374+ >mRNA_E-siliculosus-1a_F_contig1050.365.1 ID=mRNA_E-siliculosus-1a_F_contig1050.365.1|Name=mRNA_E-siliculosus-1a_F_contig1050.365.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=408bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1050:31138..33374+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |