mRNA_E-siliculosus-1a_F_contig1050.364.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1050.364.1 vs. uniprot
Match: D7FZC2_ECTSI (Similar to Imprinted and ancient n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC2_ECTSI) HSP 1 Score: 506 bits (1303), Expect = 6.110e-177 Identity = 270/317 (85.17%), Postives = 274/317 (86.44%), Query Frame = 2 Query: 41 MGNDSGDLSVQEREANVSAQLEELEALEAIYGEGYEAVRGSAASPQLRIRVSEIPLVSLHLCLPVGYPSRDFPELEIKAPGLGQAARRKLREALLPSASPSSEPVEFAKQSPGGTVVVFDWVETLRDLLSRTDYTSGSPAVDGGDDNDADEKTVSSLTATAGKFDEDEEGGEEPLEAELPAEEYVEIFHGQAFTDRKSTFQAHLAKVSSESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGESAAGSRLAHMLAITGAQNVVVVVSRWYGGIHLGPDRFKHINNAARELLVYCGATKADAEVGG 991 MGNDSGDLSVQEREANVSAQLEELEALEAIYGEGYEAVRGSAASPQLRIRVSEIPLVSLHL LPVGYPSRDFPELEIKAPGLGQAARRK+RE DYTSGSPA DGGD+ND DE+TVSSLTATAGKFDEDEEGGEEPLEAELPAEEYVEIFHGQAFTDRKSTFQAHLA+VSSESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGESAAGSRLAHMLAITGAQNVVVVVSRWYGGIHLGPDRFKHINNAARELLVYCGATKADAEVGG Sbjct: 1 MGNDSGDLSVQEREANVSAQLEELEALEAIYGEGYEAVRGSAASPQLRIRVSEIPLVSLHLRLPVGYPSRDFPELEIKAPGLGQAARRKIRE----------------------------------------DYTSGSPAADGGDNNDGDEQTVSSLTATAGKFDEDEEGGEEPLEAELPAEEYVEIFHGQAFTDRKSTFQAHLARVSSESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGESAAGSRLAHMLAITGAQNVVVVVSRWYGGIHLGPDRFKHINNAARELLVYCGATKADAEVGG 277
BLAST of mRNA_E-siliculosus-1a_F_contig1050.364.1 vs. uniprot
Match: A0A6H5J932_9PHAE (RWD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J932_9PHAE) HSP 1 Score: 448 bits (1152), Expect = 1.160e-154 Identity = 235/255 (92.16%), Postives = 240/255 (94.12%), Query Frame = 2 Query: 41 MGNDSGDLSVQEREANVSAQLEELEALEAIYGEGYEAVRGSAASPQLRIRVSEIPLVSLHLCLPVGYPSRDFPELEIKAPGLGQAARRKLREALLPSASPSSEPVEFAKQSPGGTVVVFDWVETLRDLLSRTDYTSGSPAVDGGDDNDADEKTVSSLTATAGKFDEDEEGGEEPLEAELPAEEYVEIFHGQAFTDRKSTFQAHLAKVSSESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGE 805 MGND GDLSVQE+EANVSAQLEELEALEAIYGEGYEAV GS ASPQLRIRVSEIPLVSLHL LPVGYPSRDFPELEIKAPGLGQAARRKLREALLPSASPSSE VE AK SPGGTVVVFDWVETLRDLLSRTDYTSGSPA DGGDDND DE TVS+L AT GKFDEDEE GEEPLEAELPAEEY+EIFHGQAFTDRKSTFQAHLA+VSSESQVT VRRRLMENGKVARATHNVAAWRVWDE RGVQLHDNDDDG+ Sbjct: 1 MGNDIGDLSVQEKEANVSAQLEELEALEAIYGEGYEAVGGSTASPQLRIRVSEIPLVSLHLRLPVGYPSRDFPELEIKAPGLGQAARRKLREALLPSASPSSEAVEVAKPSPGGTVVVFDWVETLRDLLSRTDYTSGSPAADGGDDNDGDETTVSTLPATTGKFDEDEEAGEEPLEAELPAEEYMEIFHGQAFTDRKSTFQAHLARVSSESQVTRVRRRLMENGKVARATHNVAAWRVWDEDRGVQLHDNDDDGK 255
BLAST of mRNA_E-siliculosus-1a_F_contig1050.364.1 vs. uniprot
Match: A7RSN5_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RSN5_NEMVE) HSP 1 Score: 194 bits (493), Expect = 1.060e-54 Identity = 131/324 (40.43%), Postives = 184/324 (56.79%), Query Frame = 2 Query: 86 NVSAQLEELEALEAIYGEGYEAVRGSAASPQLRIRVSEIPLVSL--HLCLPVGYPSRDFPELEIKAPGLGQAARRKLREALLPSASPSSEPVEFAKQSPGGTVVVFDWVETLRDLLS------RTDYTSGS--PAVDGGDDNDADEKTVSSLTATAGKFDEDEEGGEEPLEAELPAEEYVEIFHGQAFTDRKSTFQAHLAKVSSESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGESAAGSRLAHMLAITGAQNVVVVVSRWYGGIHLGPDRFKHINNAARELLVYCGATKADAEVGGGGAGGKTRVRRK 1027 N+ Q EE+EAL AIYGE + ++ S+ ++RI+ PL SL L LP YPS+ P EI + + R+ E L + K++ G +V++ WVE LR+++ + + T+ + P D G + +S + KFD + + L A +EI HG+ FT+RKSTFQ+HLA V+ E++V + L N KVA ATHN+ A+R+++E R + D DDDGESAAGSRL H+L I +NVVVVVSRWYGGI LGPDRFKHINN+AREL+ G + + G GGKT+ + K Sbjct: 9 NLVRQCEEVEALSAIYGEDFASIDESSRMYEIRIKSENDPLYSLTMQLLLPPQYPSQAPPVFEIHSVWMTSVEMREAMEGLY----------DIYKENQG-EIVLYQWVEKLREMVDEKVKEKQKEETTHTVYPTDDKGFE------ATTSKDNSGSKFDYNSKNV-------LDASSSIEIIHGEPFTERKSTFQSHLAFVTKEAEVREMLHELKLNKKVAHATHNIMAYRIYNEERDAFIQDCDDDGESAAGSRLLHLLEILQVKNVVVVVSRWYGGILLGPDRFKHINNSARELIKSVGLLDKEVDEG---KGGKTKGKGK 305
BLAST of mRNA_E-siliculosus-1a_F_contig1050.364.1 vs. uniprot
Match: A0A7S1XJK1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJK1_9STRA) HSP 1 Score: 189 bits (479), Expect = 1.050e-52 Identity = 89/122 (72.95%), Postives = 105/122 (86.07%), Query Frame = 2 Query: 596 EIFHGQAFTDRKSTFQAHLAKVSSESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGESAAGSRLAHMLAITGAQNVVVVVSRWYGGIHLGPDRFKHINNAARELLVYCG 961 EI HG+ FTDR+STFQAH A VSSE++V VR LM+NGK+ARATHN+AAWR++DE R V +HDNDDDGE+AAG R+A +LA+TGA NVVVVVSRWYGGIHLGPDRFKHINNAAR +L + G Sbjct: 173 EIVHGEPFTDRRSTFQAHAAVVSSEAEVFAVREALMQNGKIARATHNIAAWRLFDEHRDVVIHDNDDDGETAAGGRMAELLALTGASNVVVVVSRWYGGIHLGPDRFKHINNAARAILEHMG 294
BLAST of mRNA_E-siliculosus-1a_F_contig1050.364.1 vs. uniprot
Match: UPI0006B086FD (protein IMPACT-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B086FD) HSP 1 Score: 183 bits (465), Expect = 1.010e-50 Identity = 124/298 (41.61%), Postives = 170/298 (57.05%), Query Frame = 2 Query: 74 EREANVSAQLEELEALEAIYGEGY--EAVRGSAASPQLRIRVSEIPLVSLHLCLPVGYPSRDFPELEIKAPGLGQAARRKLREALLPSASPSSEPVEFAKQSPGGTVVVFDWVETLRDLLSRTDYTSGSPAVDGGDDNDADEKTVSSLTATAGKFDEDEEGGEEPLEAELPAEEYVEIFHGQAFTDRKSTFQAHLAKVSSESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGESAAGSRLAHMLAITGAQNVVVVVSRWYGGIHLGPDRFKHINNAARELLVYCG 961 E+E N++ Q+EE+EAL AIYGE + E G++ S ++R + +E +V L + LP YP P + AP + + +L AL E + F + G ++F W++ +RD L D T G+ D T S+ F+ ++ + + E I+HG+ DRKSTFQAHLA V QV ++ +LMEN K+A ATHN+ A+R++ E D DDDGE+ AGSRL H+L I GAQNVVVVVSRWYGGI LGPDRFKHINNAAR +L +CG Sbjct: 6 EQEDNLALQVEEVEALRAIYGEEWKVEDSSGNSYSIEIRHKSAEHSVV-LKVILPPEYPLHSPPLYQFSAPWMKGYQKVELSTAL--------EDIYF---NHSGESILFMWIDKIRDYLDIWD-TCGNNIQD----------TSESIAEEYVDFNFEKYKNGGSSQQKCSDFETPRIYHGETIVDRKSTFQAHLAPVVCVEQVQQIKTKLMENRKIASATHNILAYRIYIEDTKSFHQDCDDDGETHAGSRLLHLLEILGAQNVVVVVSRWYGGILLGPDRFKHINNAARIVLQHCG 280
BLAST of mRNA_E-siliculosus-1a_F_contig1050.364.1 vs. uniprot
Match: A0A7S2S5T7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5T7_9STRA) HSP 1 Score: 182 bits (462), Expect = 7.590e-50 Identity = 127/312 (40.71%), Postives = 168/312 (53.85%), Query Frame = 2 Query: 80 EANVSAQLEELEALEAIYGEGYEAVRGSAASPQLRIRVSEIPLVSLHLCLPVGYPSRDFPELEIKAPGLGQAARRKLREALLPSASPSSEPVEFAKQSPGGTVVVFDWVETLRDLLSRTDYTSGSPAVDGGDDNDADEKTVSSLTATA-----------------GKFDEDEEGGEEPLEAELPA--EEYV---EIFHGQAFTDRKSTFQAHLAKVSSESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGESAAGSRLAHMLAITGAQNVVVVVSRWYGGIHLGPDRFKHINNAARELL 949 EA++ A EE EAL +IYG+ + +R A +RVSE P LHL LP GYP+ P E+ P LG AARR++ A L ++ G VF +E RD + T+ V+ G D ++V +L TA +G EEP A +E+V ++ G+ F DRKS FQAH A+V Q W R L+ + K+ARATHN+ A+R +D + VQ DND+DGE AAG +LA +L + G NV+VVVSRWYGGIHLGPDRF+HINNAAR+LL Sbjct: 2 EASMEAVEEECEALVSIYGDELQVIREPAWL--YAVRVSEEPECVLHLSLPPGYPTEAGPISELHCPALG-AARREVLAAQLRQVWRDAD----------GEPCVFGCIEHARDYI-HTELPQA--VVEQGSDEADQGESVGTLPGTAPAAASSXPXXXXXXXXXXXXXXSMKGPEEPASPHGVAVRDEHVYAVDVVSGEPFVDRKSAFQAHFARVHCREQCHWFMRHLLSHSKIARATHNIMAYRYFDPRQQVQCADNDEDGEYAAGGKLAELLELMGVNNVIVVVSRWYGGIHLGPDRFRHINNAARKLL 297
BLAST of mRNA_E-siliculosus-1a_F_contig1050.364.1 vs. uniprot
Match: B3RV63_TRIAD (RWD domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RV63_TRIAD) HSP 1 Score: 182 bits (462), Expect = 1.060e-49 Identity = 120/323 (37.15%), Postives = 169/323 (52.32%), Query Frame = 2 Query: 92 SAQLEELEALEAIYGEGYEAVRGSAASPQLRIR---VSEIPLVSLHLCLPVGYPSRDFPELEIKAPGLGQAARRKLREALLPSASPSSEPVEFAKQSPGGTVVVFDWVETLRDLLS-----------RTDYT-SGSPAVD-------GGDDNDADEK------TVSSLTATAGKFDEDEEGGEEPLEAELPAEEYVEIFHGQAFTDRKSTFQAHLAKVSSESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGESAAGSRLAHMLAITGAQNVVVVVSRWYGGIHLGPDRFKHINNAARELLVYCGATKAD 976 S + EELEAL +IYG+ + + G++ +R++ + + + L + LPV YP+ + PE E+ A + ++ AL + GG V++F WVE LR+ L+ R +Y SGS ++D G DN+ + K V+S +T+ A + EE EI HG+ DRKS FQAHLA V S+V ++ LME K+A A+HNV A+R+ +E G + D DDDGE AAGSRL H+L I +NV V+VSRWYGG+ LG DRFKH NN AR L+ G K D Sbjct: 30 SLKKEELEALASIYGDDWSVIDGTSRIYVIRLQKDYLDSVVSIELKVLLPVTYPTDNAPEYELTANFFSEEEHTEMCHAL-----------DTIYNDSGGEVILFQWVEKLRECLAWKIEKENSIIQRRNYVASGSNSIDISTVYQSSGSDNEIESKLDETDNAVNSAPSTS---------------AIIGKEENPEIIHGEPIVDRKSVFQAHLAVVKCVSEVARMKDSLMEKRKIAHASHNVLAYRIINEEHGTYIQDCDDDGEKAAGSRLLHLLEILNIENVAVIVSRWYGGVLLGADRFKHYNNCARALIYQAGLPKVD 326
BLAST of mRNA_E-siliculosus-1a_F_contig1050.364.1 vs. uniprot
Match: UPI0014559C3A (protein IMPACT-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014559C3A) HSP 1 Score: 181 bits (458), Expect = 1.110e-49 Identity = 123/305 (40.33%), Postives = 172/305 (56.39%), Query Frame = 2 Query: 80 EANVSAQLEELEALEAIYGEGYEAVRGSAASPQLRIRVSEIPLVSLHLCL----PVGYPSRDFPELEIKAPGLGQAARRKLREALLPSASPSSEPVEFAKQSPGGTVVVFDWVETLRD-LLSRTDYTSGSPAVDGGDDNDADEKTVSSLTATAGKFDEDEEGGEEPLEAELPAEEYVEIFHGQAFTDRKSTFQAHLAK-VSSESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGESAAGSRLAHMLAITGAQNVVVVVSRWYGGIHLGPDRFKHINNAARELLVYCGATKAD 976 E N++ Q +E+EAL AIYG+ + V S + + E ++L +CL P YPS PE +I AP L A R+++ L S +S G V++ VE LR+ L+ RT +P D +D +E +SS + F + L+ E+P I HG+ +DR+STFQAHLA +S+ QV VRR+L+EN K+A A HN+ A+R++ E RG+ L D D+DGE+AAG RL H++ I +NVVV+V+RW+GGI LGPDRFKHINNAAR L G D Sbjct: 5 EDNLTRQADEIEALTAIYGDEWCVVDESNRIYCIAVSNQEEKQLNLKICLQVLLPSEYPSTSPPEYQINAPWLKDAERQEVNHGLEQVCSDNS-----------GESVLYLLVECLREHLVHRTHKAQHAPPEDAFED---EESLISSEVESNVIFS----SSADVLDCEIPP-----ILHGEPISDRRSTFQAHLAAPISTVQQVAQVRRKLLENRKIANACHNIQAYRIYCEDRGIFLQDCDNDGEAAAGPRLLHLMEILDVRNVVVIVTRWFGGIMLGPDRFKHINNAARNTLQEHGFIHKD 286
BLAST of mRNA_E-siliculosus-1a_F_contig1050.364.1 vs. uniprot
Match: UPI0019395A0A (protein IMPACT-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI0019395A0A) HSP 1 Score: 177 bits (450), Expect = 7.720e-49 Identity = 121/305 (39.67%), Postives = 165/305 (54.10%), Query Frame = 2 Query: 80 EANVSAQLEELEALEAIYGEGYEAVRGSAASPQLRIRV----SEIPLVSLHLCLPVGYPSRDFPELEIKAPGLGQAARRKLREALLPSASPSSEPVEFAKQSPGGTVVVFDWVETLRDLLSRTDYTSGSPAVDGGDDNDADEKTVSSLTATAGKFDEDEEGGEEPLEAELPAEEYVEIFHGQAFTDRKSTFQAHLAKVSSESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGESAAGSRLAHMLAITGAQNVVVVVSRWYGGIHLGPDRFKHINNAARELLVYCGATKADAE 982 E+N+ Q +E+EAL AIY E ++ V G +L R S + ++ L + LP YP P EI+AP L +R++L AL E G ++F W E +RD+L + + S E VS ++ F + EEPL LP I HG+ TDRKSTFQAHLA VSS + VR+ L+ + K+A ATHN+ A+R+ ++ G D DDDGE AAG RL H+L I +N++++VSRWYGGIHLGPDRFKHINNAAR +L G +A+ Sbjct: 6 ESNLERQKDEIEALAAIYTEEFKIVNGENHIYELEFRKHQGKSTLKII-LQVTLPPLYPEESPPMYEIQAPWLKGTSRQELYNAL-----------ESIYLENIGEDILFMWAEKVRDILEKENPDS--------------EGNVSDISNCETDF----KSHEEPL---LPC---PRISHGETITDRKSTFQAHLAVVSSMDDIKAVRQNLLSHRKIANATHNIVAYRIQNKI-GTFNQDCDDDGEHAAGGRLLHLLQILDVKNIIIIVSRWYGGIHLGPDRFKHINNAARSILQSEGFLNKNAK 273
BLAST of mRNA_E-siliculosus-1a_F_contig1050.364.1 vs. uniprot
Match: UPI00143DD6F1 (protein IMPACT-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143DD6F1) HSP 1 Score: 177 bits (449), Expect = 1.210e-48 Identity = 112/291 (38.49%), Postives = 162/291 (55.67%), Query Frame = 2 Query: 86 NVSAQLEELEALEAIYGEGYEAVRGSAASPQLRIRVSEIPLVSLHLCLPVGYPSRDFPELEIKAPGLGQAARRKLREALLPSASPSSEPVEFAKQSPGGTVVVFDWVETLRDLL--SRTDYTSGSPAVDGGDDNDADEKTVSSLTATAGKFDEDEEGGEEPLEAELPAEEYVEIFHGQAFTDRKSTFQAHLAKVSSESQVTWVRRRLMENGKVARATHNVAAWRVWDEARGVQLHDNDDDGESAAGSRLAHMLAITGAQNVVVVVSRWYGGIHLGPDRFKHINNAARELLV 952 N+S Q++E+EAL AIYGE ++ S ++I+ +E VSL+ LP YPS P EI AP L + + LR L + A S G ++F W+E +R+ L + + + +D D+ + + +S + + +E E P +I HG+ DRKS+FQ H A + S QV V +LMEN K+A ATHN+ A+R+ E + D +DDGE+ AG RL H+L I A+NV+VVV+RWYGG+HLGPDRF+HINNAAR++L Sbjct: 5 NLSKQIDEIEALSAIYGEDWQTEDESNRVYSIKIKDNEN-YVSLYFKLPTDYPSSSPPSYEISAPHLDNSKKMHLRNLL-----------DEAYLSNIGQSILFQWIEVVREDLQENNNEASPDESLLDPTFDHSIEIQEISPIHSA--------------IENECP-----KIIHGEVILDRKSSFQGHAAILVSVEQVKQVVDKLMENRKIAHATHNIYAYRIHREDSNSFIQDCEDDGETQAGGRLLHLLQIVDAKNVIVVVTRWYGGVHLGPDRFRHINNAARQVLT 264 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1050.364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1050.364.1 >prot_E-siliculosus-1a_F_contig1050.364.1 ID=prot_E-siliculosus-1a_F_contig1050.364.1|Name=mRNA_E-siliculosus-1a_F_contig1050.364.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=338bp MGNDSGDLSVQEREANVSAQLEELEALEAIYGEGYEAVRGSAASPQLRIRback to top mRNA from alignment at E-siliculosus-1a_F_contig1050:22158..27270+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1050.364.1 ID=mRNA_E-siliculosus-1a_F_contig1050.364.1|Name=mRNA_E-siliculosus-1a_F_contig1050.364.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5113bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1050:22158..27270+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1050:22158..27270+ >mRNA_E-siliculosus-1a_F_contig1050.364.1 ID=mRNA_E-siliculosus-1a_F_contig1050.364.1|Name=mRNA_E-siliculosus-1a_F_contig1050.364.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2028bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1050:22158..27270+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |