mRNA_E-siliculosus-1a_F_contig105.359.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig105.359.1
Unique Name	mRNA_E-siliculosus-1a_F_contig105.359.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: D8LSE6_ECTSI (NUOE homolog, NADH dehydrogenase (Ubiquinone) subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE6_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 1.390e-127
Identity = 180/182 (98.90%), Postives = 182/182 (100.00%), Query Frame = 2

Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELL+KCK+GETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY
Sbjct:   97 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLEKCKNGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 278

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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A6H5KME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KME6_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 5.130e-106
Identity = 156/172 (90.70%), Postives = 159/172 (92.44%), Query Frame = 2

Query:  917 MEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            MEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELL+KCK+GETPEMGRWGSLPLNGQVSCEGP             GFMMRKDLEQKVDP+SVKDHMCY
Sbjct:    1 MEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLEKCKNGETPEMGRWGSLPLNGQVSCEGP-------------GFMMRKDLEQKVDPRSVKDHMCY 159

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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A835YYT9_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYT9_9STRA)

HSP 1 Score: 315 bits (808), Expect = 1.350e-99
Identity = 142/182 (78.02%), Postives = 161/182 (88.46%), Query Frame = 2

Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            Q+GGWLPLAAM KVA ++G   M++YEVATFYTMFNREKRG++FIQLCGTTPCMVCGS DIKKTI +ELGIK+G TTADG+FTLLEVECLG+CANAPM+Q+NDDY+ECLTP+TMKEL+  CK+G  P MG+WGSLP+NGQVSCEGPHGKTSL   P GPGFMMRKDLE KVDP SVK HM Y
Sbjct:   87 QNGGWLPLAAMNKVAAVIGVQPMRIYEVATFYTMFNREKRGQYFIQLCGTTPCMVCGSNDIKKTITEELGIKDGETTADGLFTLLEVECLGSCANAPMIQLNDDYYECLTPQTMKELIAACKAGNPPAMGKWGSLPMNGQVSCEGPHGKTSLTEPPPGPGFMMRKDLEPKVDPASVKAHMSY 268

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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A7S2FXN0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXN0_9STRA)

HSP 1 Score: 286 bits (731), Expect = 5.740e-88
Identity = 139/193 (72.02%), Postives = 157/193 (81.35%), Query Frame = 2

Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSL-EGTPTGPGFMMRKDL----------EQKVDPKSVKDHMCY 1432
            Q+GGWLPLAAM+ VAK+V    M+VYEVATFYTMFNREKRGK+FIQLCGTTPCMVCGSEDIK+TIMDELGI +G TT DG+FTLLEVECLGACANAPM+Q+NDDY+ECLTP+TM ELL  CK G  PEMG+WGSLP+NGQVSCEGP GKTSL +G P  P   +R D+          E  VDP SVK+HMCY
Sbjct:   91 QNGGWLPLAAMDCVAKVVEVPPMRVYEVATFYTMFNREKRGKYFIQLCGTTPCMVCGSEDIKQTIMDELGIHDGETTDDGLFTLLEVECLGACANAPMIQMNDDYYECLTPKTMTELLKLCKDGSPPEMGKWGSLPMNGQVSCEGPQGKTSLFDGPP--PPAPLRTDMFGDPAWKPGAEGSVDPVSVKEHMCY 281

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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A7S2MPT9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MPT9_9STRA)

HSP 1 Score: 283 bits (724), Expect = 3.210e-87
Identity = 131/182 (71.98%), Postives = 151/182 (82.97%), Query Frame = 2

Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            QHGGWLP+AAM+KVA+IV  +  +VYEVA+FYTMFNR KRGK+F+QLCGTTPCM+CGSEDIKKTI D LGIKNG TT DGMFTLLEVECLGACANAPM+Q+NDDY+ECLTP+T  ELL+ CK GE P MG+WGSLP+NGQVSCEGP GKT+L   P  P     +  + KVDP SVK+HM Y
Sbjct:   80 QHGGWLPVAAMDKVAQIVDTNPARVYEVASFYTMFNRTKRGKYFLQLCGTTPCMICGSEDIKKTIEDHLGIKNGETTKDGMFTLLEVECLGACANAPMIQMNDDYYECLTPKTTIELLEACKRGEPPAMGKWGSLPMNGQVSCEGPLGKTALFEEPVPPKVEEGRFKDGKVDPVSVKEHMAY 261

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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A7S1DC55_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DC55_CYCTE)

HSP 1 Score: 281 bits (718), Expect = 3.460e-86
Identity = 133/183 (72.68%), Postives = 150/183 (81.97%), Query Frame = 2

Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGT-PTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            QHGGWLP+AAM+KVA+IVG    +VYEVA+FYTMFNR K GKHFIQLCGTTPCM+CGSEDIK+TI   LGIKNG TT DG+FTLLEVECLGACANAPMVQ+NDDY+ECLTPET  ELL+ CK GETP MG+WGSLP+NGQVSCEGP GKTSL    P  P     +  + +VDP SVKD+M Y
Sbjct:   89 QHGGWLPVAAMDKVAQIVGAAPSRVYEVASFYTMFNRTKVGKHFIQLCGTTPCMICGSEDIKQTIEKHLGIKNGETTKDGLFTLLEVECLGACANAPMVQLNDDYYECLTPETTIELLEACKRGETPPMGKWGSLPMNGQVSCEGPKGKTSLTWKEPVAPTVDPNRFKDGEVDPASVKDNMAY 271

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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A7S4E2R0_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2R0_9STRA)

HSP 1 Score: 280 bits (717), Expect = 1.350e-85
Identity = 133/182 (73.08%), Postives = 151/182 (82.97%), Query Frame = 2

Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            QHGGWLP+AAM+KVA +VG   M+VYEVATFYTMFNRE  GK+FIQLCGTTPCMVCGSE IKK I D LGI+ G TT DG+FTL EVECLGACANAPMVQ+NDDY+ECLTP+++ ELL+ CK GE  EMGRWGSLP+NGQVSCEGP GKTSL   P  P + MR+DL+ +VDP SVK HM Y
Sbjct:  122 QHGGWLPVAAMDKVAALVGVAPMRVYEVATFYTMFNREPVGKYFIQLCGTTPCMVCGSEAIKKAIEDHLGIQEGETTKDGLFTLREVECLGACANAPMVQMNDDYYECLTPKSVVELLEACKRGEKHEMGRWGSLPMNGQVSCEGPRGKTSLGNGPPAP-YAMREDLKGEVDPASVKAHMGY 302

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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A7S1BMX3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMX3_9STRA)

HSP 1 Score: 277 bits (709), Expect = 1.440e-85
Identity = 129/182 (70.88%), Postives = 149/182 (81.87%), Query Frame = 2

Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            Q GGWLPLAAM+KVA++VG   M+VYEVATFYTMFNREKRGK+FIQLCGTTPCM+CG+ DIKKTI + LGI++G TT DG+FTLLEVECLGACANAPM+Q+NDDY+ECLTP+T  ELL+ CK G  P MG+WGSLP+NGQVSCEGP GKT L   P   GF+     E  VDP SVK+HM Y
Sbjct:   43 QAGGWLPLAAMDKVAQVVGVAPMRVYEVATFYTMFNREKRGKYFIQLCGTTPCMICGAGDIKKTITEHLGIEDGETTPDGLFTLLEVECLGACANAPMIQLNDDYYECLTPKTTIELLEACKKGAPPPMGKWGSLPMNGQVSCEGPLGKTCLTTIPA--GFVREGGFEGSVDPASVKEHMGY 222

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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: M4B7W8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B7W8_HYAAE)

HSP 1 Score: 278 bits (712), Expect = 2.670e-85
Identity = 134/185 (72.43%), Postives = 151/185 (81.62%), Query Frame = 2

Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPT-GPGFMMRKD--LEQKVDPKSVKDHMCY 1432
            QHGGWLPLAAM KVA+IV    ++VYEVATFYTMFNREK GK+FIQLCGTTPCM+CGSE+I+KTI D LGIK G TT DGMFTL EVECLGACANAPMVQINDDY+E LTPET++ELLD CK    P M +WGSLP+NGQ+SCEGP GKTSL+     GPGF MR D  L+ KV+PK +KD M Y
Sbjct:   87 QHGGWLPLAAMNKVARIVDAKPIQVYEVATFYTMFNREKVGKYFIQLCGTTPCMICGSEEIRKTIEDHLGIKKGDTTEDGMFTLQEVECLGACANAPMVQINDDYYENLTPETIRELLDACKKDAPPLMNKWGSLPMNGQLSCEGPQGKTSLKWDKVPGPGFRMRPDDELKPKVNPKDIKDAMLY 271

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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A0N7L5T5_PLAHL (Nadh dehydrogenase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5T5_PLAHL)

HSP 1 Score: 278 bits (710), Expect = 5.290e-85
Identity = 133/185 (71.89%), Postives = 151/185 (81.62%), Query Frame = 2

Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGT-PTGPGFMMR--KDLEQKVDPKSVKDHMCY 1432
            QHGGWLPLAAM KVA+IV    ++VYEVATFYTMFNREK GK+FIQLCGTTPCM+CGSE+IKKTI   LGIK G TT DG FTL EVECLGACANAPMVQINDD++E LTPET +ELLD CK   TP M +WGSLP+NGQ+SCEGP GKTSL+   P GPGF MR  +DL+ K++PK +KD M Y
Sbjct:   87 QHGGWLPLAAMNKVARIVDVKPIQVYEVATFYTMFNREKVGKYFIQLCGTTPCMICGSEEIKKTIETHLGIKEGETTKDGKFTLREVECLGACANAPMVQINDDFYENLTPETTRELLDACKKDATPPMSKWGSLPMNGQLSCEGPQGKTSLKWEKPPGPGFRMRPDEDLKPKINPKDIKDAMLY 271

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D8LSE6_ECTSI	1.390e-127	98.90	NUOE homolog, NADH dehydrogenase (Ubiquinone) subu...	[more]
A0A6H5KME6_9PHAE	5.130e-106	90.70	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835YYT9_9STRA	1.350e-99	78.02	NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=3...	[more]
A0A7S2FXN0_9STRA	5.740e-88	72.02	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S2MPT9_9STRA	3.210e-87	71.98	Hypothetical protein n=1 Tax=Helicotheca tamesis T...	[more]
A0A7S1DC55_CYCTE	3.460e-86	72.68	Hypothetical protein n=1 Tax=Cyclophora tenuis Tax...	[more]
A0A7S4E2R0_9STRA	1.350e-85	73.08	Hypothetical protein n=2 Tax=Pelagomonas calceolat...	[more]
A0A7S1BMX3_9STRA	1.440e-85	70.88	Hypothetical protein n=2 Tax=Corethron hystrix Tax...	[more]
M4B7W8_HYAAE	2.670e-85	72.43	Uncharacterized protein n=1 Tax=Hyaloperonospora a...	[more]
A0A0N7L5T5_PLAHL	5.290e-85	71.89	Nadh dehydrogenase n=1 Tax=Plasmopara halstedii Ta...	[more]

Pages

Properties


Property Name	Value
Start	1
Stop	1
Cds size	750
Model size	2072
Exons	5
Ec32 ortholog	Ec-21_003400.1
Ec32 ortholog description	NUOE homolog, NADH dehydrogenase (ubiquinone) subunit
Hectar predicted targeting category	other localisation
BRITE	ko00000,ko00001,ko00002,ko01000,ko03400,ko04121,ko04147
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	C
EC	1.6.5.3,1.6.99.3
EggNOG OGs	COG1905@1,KOG3196@2759
EggNOG free text desc.	NADH dehydrogenase (quinone) activity
GOs	GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008137,GO:0008150,GO:0008152,GO:0008270,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0050136,GO:0050896,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
KEGG Module	M00143,M00379,M00380,M00381,M00382,M00385,M00386,M00387,M00407,M00411
KEGG Pathway	ko00190,ko01100,ko03420,ko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05168,ko05200,map00190,map01100,map03420,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map04714,map04723,map04932,map05010,map05012,map05016,map05168,map05200
KEGG Reaction	R11945
KEGG TC	3.D.1.6
KEGG ko	ko:K03347,ko:K03943,ko:K10609
KEGG rclass	RC00061
Preferred name	Ndufv2
Seed eggNOG ortholog	2880.D8LSE6
Seed ortholog evalue	1.2e-105
Seed ortholog score	389.4
Taxonomic scope	Eukaryota

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927551.9640496-UTR-E-siliculosus-1a_F_contig105:68810..69447	1622927551.9640496-UTR-E-siliculosus-1a_F_contig105:68810..69447	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig105 68811..69447 -
1696318581.9364243-UTR-E-siliculosus-1a_F_contig105:68810..69447	1696318581.9364243-UTR-E-siliculosus-1a_F_contig105:68810..69447	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig105 68811..69447 -
1622927552.057629-UTR-E-siliculosus-1a_F_contig105:71632..72173	1622927552.057629-UTR-E-siliculosus-1a_F_contig105:71632..72173	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig105 71633..72173 -
1696318581.9927099-UTR-E-siliculosus-1a_F_contig105:71632..72173	1696318581.9927099-UTR-E-siliculosus-1a_F_contig105:71632..72173	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig105 71633..72173 -
1622927552.077039-UTR-E-siliculosus-1a_F_contig105:73477..73621	1622927552.077039-UTR-E-siliculosus-1a_F_contig105:73477..73621	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig105 73478..73621 -
1696318582.0075636-UTR-E-siliculosus-1a_F_contig105:73477..73621	1696318582.0075636-UTR-E-siliculosus-1a_F_contig105:73477..73621	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig105 73478..73621 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927551.9811766-CDS-E-siliculosus-1a_F_contig105:69447..69563	1622927551.9811766-CDS-E-siliculosus-1a_F_contig105:69447..69563	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig105 69448..69563 -
1696318581.953614-CDS-E-siliculosus-1a_F_contig105:69447..69563	1696318581.953614-CDS-E-siliculosus-1a_F_contig105:69447..69563	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig105 69448..69563 -
1622927552.0077147-CDS-E-siliculosus-1a_F_contig105:70084..70217	1622927552.0077147-CDS-E-siliculosus-1a_F_contig105:70084..70217	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig105 70085..70217 -
1696318581.9638135-CDS-E-siliculosus-1a_F_contig105:70084..70217	1696318581.9638135-CDS-E-siliculosus-1a_F_contig105:70084..70217	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig105 70085..70217 -
1622927552.0240798-CDS-E-siliculosus-1a_F_contig105:70780..70857	1622927552.0240798-CDS-E-siliculosus-1a_F_contig105:70780..70857	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig105 70781..70857 -
1696318581.9737535-CDS-E-siliculosus-1a_F_contig105:70780..70857	1696318581.9737535-CDS-E-siliculosus-1a_F_contig105:70780..70857	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig105 70781..70857 -
1622927552.0424066-CDS-E-siliculosus-1a_F_contig105:71208..71632	1622927552.0424066-CDS-E-siliculosus-1a_F_contig105:71208..71632	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig105 71209..71632 -
1696318581.9831047-CDS-E-siliculosus-1a_F_contig105:71208..71632	1696318581.9831047-CDS-E-siliculosus-1a_F_contig105:71208..71632	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig105 71209..71632 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig105.359.1	prot_E-siliculosus-1a_F_contig105.359.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig105 69448..71632 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig105:68811..73621-
coding sequence from alignment at E-siliculosus-1a_F_contig105:68811..73621-

protein sequence of mRNA_E-siliculosus-1a_F_contig105.359.1

>prot_E-siliculosus-1a_F_contig105.359.1 ID=prot_E-siliculosus-1a_F_contig105.359.1|Name=mRNA_E-siliculosus-1a_F_contig105.359.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=250bp
MTTAASCTSYRKRTTPFYNVYTTLHAFTTMGVLPRILRHASVAPPLYITV
SSPVSIVPSVFFWFFVLQHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYT
MFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFT
LLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWG
SLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY*

mRNA from alignment at E-siliculosus-1a_F_contig105:68811..73621-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig105.359.1 ID=mRNA_E-siliculosus-1a_F_contig105.359.1|Name=mRNA_E-siliculosus-1a_F_contig105.359.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4811bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:68811..73621- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGTTGCGCACGATAGGAGCTGCCACGCGGGCCCTTGCATCACGGCG
ACCATGTACCGTGCGAGCACCGTCCACCGTTAGCGCGGCGAGGAACGTAC
ACCGCACTGTTTCGGCTCGTGACGAAGTGCACCAACTGGGACAGGTGTGC
AAAAACTGGGAGCTCGCTCCTTGTCCTCGCCGTCTCGGTCTGTTGTATAT
TGCTGTATGTGTGTCTGTCTCCGTGCTTGAAGACCCCCAGCCGCACTTGT
TTCCTCTGGGACATCTATTCACCGGGTCCTTTTGCGGGGAGTGCATGCAT
GCAGACCTGTGTGTTCTTGTTGGCGGGGACAGCGTGCTGTGTCTCCAATC
GCAATGCCTCACGGATTGTGGTGCAGTTCCTCACCCAGGTGTAGCGTACA
TTATCAGAGAGCTCCGTCGAGGGTGCGCTCGAGGGTGCAACACAGCACGT
GGTTGGGCGTCGAAATTGGCGGCAATGTGCATAGCAGAGAGTATTTTCGG
GATTATTTTGTTGCATTGTTTCCTGTCCTTGTTTTTACTGCAGCAGCGTC
TGCACGAGGGGCGAATGGAAGCTCGATCCCCGCCGGCGTGTGTGTGTGTT
CTCCGACGTACATGCACATCTGCTGAGTACATTGCGTGTGCATTCATGTA
CTGCTGCTGTAAGCACAGATGGTGTACAGCATCACCTTACCCCCACGGTG
CTTCAGTGGCAACGAAGCACACAGAGGTGGTGTCGCGCTTTGAGACCTTG
CCGGCGGCACTGCTGCGACTTGCAGTGCGATGTCGAGCCAGAAGAACCCG
AATTGTGAGCTTTTGTGTACTACGGCGGCGCTCAATTGTTATCTTACATG
CACGGCAGTCGTCAAAGAAAACCCAATGTATACCTAAAGCCGTGCACAGC
AGTACTGCTCGCCCCACATGGGATACCAGGATATTGCACACCAGGACCAT
GGCGAGCATGGTGGGAGATAGGATAATCAAGTAGATGTAGTCGTCGGTGT
ATCAGCGTCAACGAGGTCTAGACAAAACACATTTCCTTGTCCGGGCGTCT
TGCCCCGACCCGACCTAGGACAACATGACAACACACCAGAACCATAAACT
TTGCAGACGATTCGGAGGGCGAGGAATCTACAAGGTTACCGCATCCGCGT
CAAGCGAAATCGCCTGCGTCAAAAGCAGTGCTGACTTTTGGCCATCCAGG
CCTTCGAACCGCACAACCTTCCTAACGAATGAGAGGCCGACCCCCCCCCC
CCCCCCCCCCCCCCCCCCACCACAACAACACAAGGGCACCCCGGACAAAA
ACAAGACGAAGGTCCTGCACNNNNNNNNNNCCCGCCTCAAAAACAGTGCC
GGTTTTTGGCCCCCCCGCCCCCCCCACCCCCCCCCCCCCCCAACGAAAGA
GAGGCCCCCCCCCCCCCCCCCCCCCCTCGACACCACACGACACAACAGCA
CAAGGACACCCCGGACAACAACGAGACGACGTTCTTCGACTTCACGGACG
AGAACTACGCCAGAGTGGAGAAGATCATGGCCAAGTACCCGGCCAACTAC
CGACAGGCATCGATCATCCCGCTGCTCGACCTGGCGCAGAGGCAGGCAAG
AGGACGAGACACAGGACTACAGTGGATACGCCGGTAGTTTTTTATGGATA
CTATTCCTAAACCTTGTTATTTTCCAGCACCGAGCAGACCTACAACGCGG
AGAATTTGGGTACTGTAACAGGTTACGGTTGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGCCGCCCCCGCCGCCCCCGCCAAGATAAAAAGGAAACTAT
TCTTCTTTTGGNNNNNNNGCAGGGGGTGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGCGTTAGGACGACCTGCCGCCGACTTCGACCT
AAAAGGATGAAATAGATTTCGTATCGTTGTTTGGTGTGTATGACGACGGC
AGCAAGTTGTACTTCATATCGGAAACGCACGACCCCATTTTACAACGTTT
ATACGACCCTGCACGCTTTTACTACTATGGGTGTTTTGCCACGCATCCTA
CGGCACGCCTCCGTTGCTCCTCCGCTATATATAACGGTTTCGTCCCCGGT
CTCCATCGTGCCATCTGTTTTTTTTTGGTTCTTCGTCCTGCAGCACGGGG
GCTGGCTGCCGCTGGCCGCGATGGAGAAGGTCGCCAAGATCGTGGGGCAG
CACGAGATGAAGGTGTACGAGGTGGCCACCTTCTACACCATGTTCAACCG
CGAGAAGCGGGGAAAGCACTTCATCCAGCTCTGCGGCACGACGCCGTGCA
TGGTGTGCGGCTCGGAGGACATCAAGAAGACCATCATGGACGAGCTCGGC
ATCAAGAACGGGGGTGAGAAAAGGGAGAGAAAGGAGCGAAGCTATACAGC
AGTCTCATTCCCCTAGGACACTTTGCACATTTGTTTGTTTTTTTGCTCTT
TCCCTTGCATTTGTTGCCAGCATGAACGAAAATATCAAATCACCCCCCCC
GCTCTGACTTCGTTGGCGCGAGTGGTGAGAACTGTGTCCCGGGTCTTCTC
TCATTCGTTTGTGCTCTGTTTGGTTAACCTACGGTCTGCGCAAAGAATTC
AAGCAACATGCCAACACTTCGCATAGCATCAACGATTGTGATTTCCACAC
AAGAATTTACCGGAAGTGCAGTTGACCAGCACGGTACAATTGATTGTTTT
TGTTGTTGTCTCAGGAACAACGGCGGACGGCATGTTCACGCTGTTGGAGG
TGGAGTGTCTCGGAGCTTGCGCGAACGCGCCCATGGTGCAGGTGCGTCAA
GTGCTGTTGATGCCGCTGTGCGGGCACGGGAGAGGGGAAATCGTGTTCCA
TTGCTCTCCATGCTTTTTGTGTGGACACACGCGCGAGAGGACGTGCGTGT
TACGCCCTGTTGTTTCGGACGTGTTTTGTTCATGGCCCCTCCTTTGCGTG
TGGTTTTCTGTGATGTTTTCACACATGAGGGCGTGTCTGTGCTGTCTCAA
GAATCGGGGGCGCTCACCAGCTACAGATGAAAATACGCGTGTTGCAACCC
ACACCACCGGGACTTGTCGGCACGGAGCGGGGCACCATGAGTACACACGC
CGGGCGCAACGTCCGCCCGAATCAAAGCCTACGCGCAAAGCCTCGCACGA
ATGGTGCAGCGTTATCGCGCGCAACCTCGTACATGGTGCTCTGGGTTGGT
TGGCCATGTAGAAGTTGAGCGCTTTCCACATCCACCAAACTGAAACGTCT
GCCTCGTCCCCCCCCCCCCCCACGGGCCTCCCGTGTCGTAACCCCTGTTA
TGTGCTGCTTCCGGCCGGCCTTCCGCGATTTCTCCAACCATCCCCGTGGA
ATAGATTAACGACGACTACTTCGAGTGCCTCACGCCCGAGACCATGAAGG
AGCTCCTGGACAAGTGCAAGAGCGGCGAGACGCCGGAGATGGGCCGGTGG
GGCAGCTTGCCGCTCAACGGACAAGTCAGCTGCGAGGGTAAGAAGCGAGG
GCCGCTTTTTCTTTCGCCGCAGTCGCTACTCTTTTTTTTTTTATTGCAGA
TGCACACATGCTCGTGCACGTCGGTATCGTGGAGAGCAAAAAAAACGTTT
GTTTGTTTTTTCGCTATTGTAGCGTACGCGGCTTTGTGCGTACGCACAAA
GAAAATGGTTGTCGTGGGAGACGCTTGAAGGCTTCCCCCCCGAAGTGATG
GGAGCACTTGTTCGGCCGGTGTTCTTGAGGAGTTTGTCGTTTTCCCACGG
GTCCCGGTTAGCGCGACTTTTCACATCGTTTGTTGCCAGCTTTTCCTGTG
TAGCTCAACTCACGCGCTTGGCCTGCACAGTCCAACTCTCTAGGTTTGTG
TGTGCGTTTTTTTTGTTAGCATGGACCGCGCTAGCGGCTGACCAATCAAA
AGGCGTCAGTCTCAGGCCGGCTGAAAACACAAACGCTTGTATGGTGTGTG
TATGTGTGCGCGCGCGCTCTGCTCCCTGCCTCTCCACATGTTTACCGCTG
AAATTCAGGCCCCCACGGAAAGACATCGCTGGAGGGAACGCCGACGGGAC
CCGGATTCATGATGCGGAAGGACTTGGAGCAGAAGGTCGACCCTAAGTCG
GTTAAGGACCACATGTGCTACTGATGACGCCGTGGGGCTGATTTAGCGTG
ATCTGGTTGTGATAGTTGCCGCTGCTGCGTGGCGGCGGCGGCGTGCGGGA
GAGAAGGGCGGCGATACGCGCTCGTATGCGTGATCTTTAACGCGCTTTGA
TTGGCGAGCTGCTTGTGGCGATGGTGTACGGGCGGCGAACAAGGGGAGCG
TGGGGGCCGGCGGGGGGGGCAGTAGCGGGAGTTAAGCTTACAAGGGGTTT
TGCTTTTGTGCGGTGTAGACGGCGAGGGCAGGAAGAGGTGGCAATGTGGA
AAATTGTGATCGGACGAGCACTCGTGTGTGTTGCCGTATTGTAATGCGTC
CTCAAGTCGTTGCTCGAACTTTCGTCGCTTCGAGAGCATTTGCCTCACGA
AGTCTGACCACCGCCGTGAAGAACGCTTTGTCGTTTCATTTTAGCGAACT
TGTTTTTCCTCTTTCTATCGGCTTATTGGTTTGGCGTTTGTCGGTTCTGG
TAGGCGTTGATACGAAGACGCGGGCCGAGGAACGGTTGAGTGTACTTTAG
GCGGTAGCACTTGCTAATCGATCCCTCATGCGCTTGGAAGAGGCTTCCTC
CAATCCACCAAGACTTGGGAAGACTTGGGAAGAAAATGAATCATCAACAG
AGTGCCTCCAG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig105:68811..73621-

>mRNA_E-siliculosus-1a_F_contig105.359.1 ID=mRNA_E-siliculosus-1a_F_contig105.359.1|Name=mRNA_E-siliculosus-1a_F_contig105.359.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1500bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:68811..73621- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGACGGCAGCAAGTTGTACTTCATATCGGAAACGCACGACCCCATT
TTACAACGTTTATACGACCCTGCACGCTTTTACTACTATGGGTGTTTTGC
CACGCATCCTACGGCACGCCTCCGTTGCTCCTCCGCTATATATAACGGTT
TCGTCCCCGGTCTCCATCGTGCCATCTGTTTTTTTTTGGTTCTTCGTCCT
GCAGCACGGGGGCTGGCTGCCGCTGGCCGCGATGGAGAAGGTCGCCAAGA
TCGTGGGGCAGCACGAGATGAAGGTGTACGAGGTGGCCACCTTCTACACC
ATGTTCAACCGCGAGAAGCGGGGAAAGCACTTCATCCAGCTCTGCGGCAC
GACGCCGTGCATGGTGTGCGGCTCGGAGGACATCAAGAAGACCATCATGG
ACGAGCTCGGCATCAAGAACGGGGATGACGACGGCAGCAAGTTGTACTTC
ATATCGGAAACGCACGACCCCATTTTACAACGTTTATACGACCCTGCACG
CTTTTACTACTATGGGTGTTTTGCCACGCATCCTACGGCACGCCTCCGTT
GCTCCTCCGCTATATATAACGGTTTCGTCCCCGGTCTCCATCGTGCCATC
TGTTTTTTTTTGGTTCTTCGTCCTGCAGCACGGGGGCTGGCTGCCGCTGG
CCGCGATGGAGAAGGTCGCCAAGATCGTGGGGCAGCACGAGATGAAGGTG
TACGAGGTGGCCACCTTCTACACCATGTTCAACCGCGAGAAGCGGGGAAA
GCACTTCATCCAGCTCTGCGGCACGACGCCGTGCATGGTGTGCGGCTCGG
AGGACATCAAGAAGACCATCATGGACGAGCTCGGCATCAAGAACGGGGGA
ACAACGGCGGACGGCATGTTCACGCTGTTGGAGGTGGAGTGTCTCGGAGC
TTGCGCGAACGCGCCCATGGTGCAGGAACAACGGCGGACGGCATGTTCAC
GCTGTTGGAGGTGGAGTGTCTCGGAGCTTGCGCGAACGCGCCCATGGTGC
AGATTAACGACGACTACTTCGAGTGCCTCACGCCCGAGACCATGAAGGAG
CTCCTGGACAAGTGCAAGAGCGGCGAGACGCCGGAGATGGGCCGGTGGGG
CAGCTTGCCGCTCAACGGACAAGTCAGCTGCGAGGATTAACGACGACTAC
TTCGAGTGCCTCACGCCCGAGACCATGAAGGAGCTCCTGGACAAGTGCAA
GAGCGGCGAGACGCCGGAGATGGGCCGGTGGGGCAGCTTGCCGCTCAACG
GACAAGTCAGCTGCGAGGGCCCCCACGGAAAGACATCGCTGGAGGGAACG
CCGACGGGACCCGGATTCATGATGCGGAAGGACTTGGAGCAGAAGGTCGA
CCCTAAGTCGGTTAAGGACCACATGTGCTACTGAGCCCCCACGGAAAGAC
ATCGCTGGAGGGAACGCCGACGGGACCCGGATTCATGATGCGGAAGGACT
TGGAGCAGAAGGTCGACCCTAAGTCGGTTAAGGACCACATGTGCTACTGA