mRNA_E-siliculosus-1a_F_contig105.353.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match: A0A6H5KSI2_9PHAE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI2_9PHAE) HSP 1 Score: 967 bits (2499), Expect = 0.000e+0 Identity = 503/599 (83.97%), Postives = 506/599 (84.47%), Query Frame = 3 Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529 I+DHEYDAVVV AGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEF+QFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKD DGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPK+QTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVV DFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY Sbjct: 52 IIDHEYDAVVVRAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTTYFIEYFATDLLMTPDGECVGVIAVCMEDGSIHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFIQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRSMTIEIKEGRGVGPNADHIHLHLDHLPAELLAERLPGISETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKAQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVKDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 650
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match: D8LSF2_ECTSI (SDH1, succinate dehydrogenase subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF2_ECTSI) HSP 1 Score: 900 bits (2326), Expect = 0.000e+0 Identity = 445/448 (99.33%), Postives = 447/448 (99.78%), Query Frame = 3 Query: 186 MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTTIHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529 MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTTIHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKD DGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVV+DF+DVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY Sbjct: 93 MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTTIHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVNDFSDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 540
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match: A0A7S3ZYC3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=3 Tax=cellular organisms TaxID=131567 RepID=A0A7S3ZYC3_9STRA) HSP 1 Score: 819 bits (2116), Expect = 3.080e-288 Identity = 425/599 (70.95%), Postives = 456/599 (76.13%), Query Frame = 3 Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529 IVDH YD VVVGAGGAGLRAAMG AEAG KTAC+TKLFPTRSHTVAAQGGINAALGNMTED MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTE+GKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT IHR +AKNTVLATGGYGRA+FSCTSAHTCTGDG AMA+RAG+ EDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNS+GERFMER ETA IF+GVDVT++PIPVLPTVHYNMGGIPTNHLGEVI KKD+ GNV DHDA+VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGD V P+ +K+L LD R + G TP A++R +QK MQDHAAVYRTQESLAEGVT++D VV F DV V+DRSLIWNTDL+E +EL NLL NAA TMHAAEARKESRGAHARED PDRLDD WMKH+MTY+D T KT V YRP+H TLDE+E +VPP RVY Sbjct: 55 IVDHSYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEDGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTTYFLEFFALDLIMDDEGKCVGVVCLEMENGTIHRINAKNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRAGLAAEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSDGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKEKDHCYLHLDHLPAELLAERLPGISETAAIFAGVDVTREPIPVLPTVHYNMGGIPTNHLGEVIHQKKDASGNVVDHDAVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDAVPPLPRDAGQKTLQDLDDVRHSSGPTPTAEIRRDMQKTMQDHAAVYRTQESLAEGVTKIDKVVDSFQDVGVSDRSLIWNTDLVETLELRNLLPNAAATMHAAEARKESRGAHAREDCPDRLDDDWMKHTMTYYDEATRKTSVTYRPIHYETLDEDECAVVPPVARVY 653
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match: A0A835YUP3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUP3_9STRA) HSP 1 Score: 813 bits (2101), Expect = 1.560e-286 Identity = 423/598 (70.74%), Postives = 465/598 (77.76%), Query Frame = 3 Query: 6 VDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529 +DHEYDAVVVGAGGAGLRAAMG AEAG KTACITKLFPTRSHTVAAQGGINAALGNMT D MYDTVKGSDWLGDQDAIHYMC+EAPRAVLELE YGLPFSRTE+GKIYQRAFGGQSL++GKGGQAYRCA AADRTGHAMLHTLYGRSLAF+T+ IHRF AKNTVLATGGYGRA+FSCTSAHTCTGDG AMA+RAG+PL+DPEFVQFHPTGIYGAGCLITEG RGEGG+LRNSEGERFMER E A IFSGVDVTK+PIPVLPTVHYNMGGIPTNH GEV++P+K+++G++ D DAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGDKV +APK++T+++L ALD R+A G T A+LRLKLQ+ MQD+AAVYRTQE+LA GV VD VV +F DV VTDRSLIWNTDLIE MEL NLL NAACTMHAAEARKESRGAHAREDF DR D WMKH++ FD GKT ++YRPVH+FTLDE+E K+VPPFKRVY Sbjct: 21 LDHEYDAVVVGAGGAGLRAAMGLAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTPDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAVLELEQYGLPFSRTEDGKIYQRAFGGQSLEFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFNTSYFIEYFAMDLLMADDGSCVGVTAMCMEDGSIHRFKAKNTVLATGGYGRAYFSCTSAHTCTGDGSAMALRAGLPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGMLRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGPNKDHIHLHLDHLPAELLAERLPGISELAAIFSGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVVKPRKNANGDI-DQDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVQDAPKAETDRALGALDDMRYARGQTSTAELRLKLQRVMQDNAAVYRTQETLAHGVVSVDAVVKEFGDVGVTDRSLIWNTDLIETMELRNLLGNAACTMHAAEARKESRGAHAREDFKDRDDVNWMKHTLATFDESKGKTHLDYRPVHAFTLDEKECKVVPPFKRVY 617
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match: W7TSA7_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSA7_9STRA) HSP 1 Score: 794 bits (2050), Expect = 2.460e-278 Identity = 413/599 (68.95%), Postives = 454/599 (75.79%), Query Frame = 3 Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529 ++DHEYD VVVGAGGAGLRAAMG AEAG KTAC+TKLFPTRSHTVAAQGGINAALGNMTED MYDTVKGSDWLGDQDAIHYMCREAPRAV ELESYGLPFSRTE+GKIYQRAFGGQSL YGKGGQAYRCACAADRTGHAMLHTLYGRSLAF+TT +HR A NTVLATGGYGRA+FSCTSAHTCTGDG AM +RAG+P+EDPEFVQFHPTGIYGAGCLITEGCRGEGGILRN+EGERFMER ETA IF+GVDVTK+PIPVLPTVHYNMGGIPTNH GEVI PKK +DG++ D D ++PGLFAAGEAACASVHGANRLGANSLLDIVVFGRA ALRIA+I+KPGDKV P ++S+ LDK RFA G+T A +R K+QK MQ+HAAVYRTQ+SLAEG ++D V+S + D+KVTDRSL+WNTDLIE++EL NLLSNAA TM+AAEARKESRGAHAREDF +R D WM H++ FDYDT KT + YRPVH TLDE EVK VPPFKRVY Sbjct: 50 VIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSL-DPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match: A0A6U4KQK6_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KQK6_9STRA) HSP 1 Score: 784 bits (2025), Expect = 1.050e-274 Identity = 409/599 (68.28%), Postives = 449/599 (74.96%), Query Frame = 3 Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDT------------------------------TIHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529 IVDHE+DAVVVGAGGAGLRAAMG +E G KTAC+TKLFPTRSHTVAAQGGINAALGNMTED MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSL++GKGGQAYRCACAADRTGHAMLHTLYGRSLAFDT T+HRF+AKNTVLATGGYGRA+FSCTSAHTCTGDG AMA+RAGIP +DPEFVQFHPTGIYGAGCL+TEGCRGEGGILRNSEGERFMER ETA IF+GVDVTK+PIPVLPTVHYNMGG+PTNH GEV++P KD + DA+VPGLFAAGE A ASVHGANRLGANSLLDIVVFGRACA RIA+I+KPG+ V P EK++ LDK RFADGA P AD+RL +Q MQ+HAAVYRT + L EGV ++D VV F DVKV+D SL+WNTDLIE EL NLL NAA T+H+AEARKESRGAHA E+FPDR D+ WMKH+++Y D D+GKT V+YRPVH FTLDE E K VPP RVY Sbjct: 45 IVDHEFDAVVVGAGGAGLRAAMGLSEHGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLEFGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTAYFIEYFALDLIMDGDGKCVGIMAINMEDGTLHRFNAKNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRAGIPNQDPEFVQFHPTGIYGAGCLMTEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGPKSDHIYLHLDHLPADLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGVPTNHFGEVLKPTKD------EPDAVVPGLFAAGEVASASVHGANRLGANSLLDIVVFGRACANRIADIAKPGEAVPPLPTKAGEKTIDDLDKVRFADGAIPTADIRLDMQMTMQEHAAVYRTADVLKEGVVKMDEVVKKFKDVKVSDHSLVWNTDLIETWELRNLLPNAATTVHSAEARKESRGAHAHENFPDRDDENWMKHTLSYHDEDSGKTTVDYRPVHYFTLDEAECKTVPPVARVY 637
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match: A0A7S2Y3D2_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3D2_9STRA) HSP 1 Score: 777 bits (2007), Expect = 7.160e-272 Identity = 409/600 (68.17%), Postives = 452/600 (75.33%), Query Frame = 3 Query: 3 IVDH-EYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT-----------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVS-DFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529 IVDH E+DAVVVGAGGAGLRAAMG AEAG TAC+TKLFPTRSHTVAAQGGINAALGNMT+D MYDTVKGSDWLGDQDAIHYMC+EAP AVLELESYGLPFSRTEEGKIYQRAFGGQSL+YGKGGQA+RCACAADRTGHAMLHTLYGRSLAFDTT IHRF NTVLATGG GRA+FSCTSAHTCTGDGGAMA RAG+PLED EFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER ETA IF+GVDVTKDPIPVLPTVHYNMGGIPTNHLGEVI PKK ++G V D DAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGDK P ++S+A +DK R+A+G+T ADLRL+LQK MQ HAAVYRT + L +G+ VD + +DV+ D+ L+WNT+LIE +EL NL++NA+ + +AE RKESRGAHAREDFPDR D+ WMKH++ YFD TGK+K+EYRPVHSFTLDE+E K VPP +RVY Sbjct: 45 IVDHTEFDAVVVGAGGAGLRAAMGLAEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMTKDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPHAVLELESYGLPFSRTEEGKIYQRAFGGQSLEYGKGGQAFRCACAADRTGHAMLHTLYGRSLAFDTTYFIEYFALDLMMSEGQCVGITAMCMEDGSIHRFHTNNTVLATGGAGRAYFSCTSAHTCTGDGGAMATRAGLPLEDQEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTVEIQEGRGVGKNKDHIFLHLDHLPPDLLAERLPGISETASIFAGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVINPKKAANGEVEDWDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKKPPLPGDAGDQSIADVDKFRYANGSTSTADLRLELQKSMQTHAAVYRTPDLLKKGLDEVDAIAKRSVDDVRNDDKGLVWNTNLIETLELRNLVANASTVITSAENRKESRGAHAREDFPDRDDEHWMKHTLAYFDEATGKSKLEYRPVHSFTLDEDECKTVPPVQRVY 644
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match: F0YDU4_AURAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU4_AURAN) HSP 1 Score: 776 bits (2003), Expect = 1.680e-271 Identity = 407/599 (67.95%), Postives = 440/599 (73.46%), Query Frame = 3 Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529 +VDH YD VVGAGGAGLRAAMG AEAG KTAC+TKLFPTRSHTVAAQGGINAALGNM+ED MYDTVKGSDWLGDQDAIHYMCREAP+AVLELES+GLPFSRT++GKIYQRAFGGQSLDYGKGGQAYRC AADRTGHAMLHTLYGRSLAFDTT +HR +A NTVLATGGYGRA+FSCTSAHTCTGDG AMA+RAG+ EDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER ETA IF+GVDVTK+PIPVLPTVHYNMGGIPTNHLGEVIR DG+V DHD +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I++PG V P EK++A +D RF+ G P AD+R +QK MQDHAAVYRT ESLAEG ++ V F D+ VTDRSLIWNTDLIE +EL NLL NAA TM AAEARKESRGAHARED PDRLDD WMKH+M YFD T KT V YRP+H TLD +E +VPP RVY Sbjct: 31 VVDHSYDVCVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWKWHMYDTVKGSDWLGDQDAIHYMCREAPQAVLELESFGLPFSRTDDGKIYQRAFGGQSLDYGKGGQAYRCCAAADRTGHAMLHTLYGRSLAFDTTYFLEYFALDLIMDDEGSCVGIVAINMEDGTLHRINASNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRAGLAAEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKDADHCYLHLDHLPAELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVIRQVTGPDGSVIDHDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAEPGAPVPPLPADAAEKTIADVDAIRFSSGPRPTADVRKDMQKTMQDHAAVYRTAESLAEGCEKIQKNVEAFADIGVTDRSLIWNTDLIETIELRNLLPNAATTMFAAEARKESRGAHAREDTPDRLDDEWMKHTMCYFDEATNKTTVTYRPIHYETLDADECPVVPPVARVY 629
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match: A0A7S2RM10_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RM10_9STRA) HSP 1 Score: 770 bits (1988), Expect = 4.660e-269 Identity = 404/599 (67.45%), Postives = 442/599 (73.79%), Query Frame = 3 Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529 +VDH++D VVVGAGGAGLRAAMG AEAG KTACITKLFPTRSHTVAAQGGINAALGNMTED MYDTVKGSDWLGDQDAIHYMCREAP+AVLELES+G+PFSRTEEGKIYQRAFGGQSLD+GKGGQAYRCA AADRTGHAMLHTLYGRSLAFDTT +HR +A NT+LATGGYGRA+FSCTSAHTCTGDG AMA+RAG+ EDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER ETA IF+ VDVTK+PIPVLPTVHYNMGG+PTNH GEVIR KK++DG DHD+IVPGLFAAGE ACASVHGANRLGANSLLDIVVFGRACA RIAEI+KPG V PK + S+A LDK R+A G P A LRL++Q+ MQ++AAVYRT E L+EG ++D VV F V +DRSLIWNTDLIE +EL NLL NA+ TMHAA R ESRGAHARED PDR D+ WMKH+M YFD TG++ VEYRPVH TLDE E K VPP RVY Sbjct: 43 VVDHQFDVVVVGAGGAGLRAAMGAAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELESFGMPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFDTTYLIEYFALDLIMDDEGRCVGVLAMCMEDGSLHRINASNTILATGGYGRAYFSCTSAHTCTGDGNAMAMRAGLANEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKNNDHIFLHLDHLPADLLAERLPGISETANIFAAVDVTKEPIPVLPTVHYNMGGVPTNHFGEVIRVKKNADGT-EDHDSIVPGLFAAGEVACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGAPVPPLPKDAGDASIADLDKLRYAKGDVPTASLRLEMQQVMQENAAVYRTAEVLSEGCEKIDAVVDKFQHVGTSDRSLIWNTDLIETLELRNLLGNASTTMHAASQRTESRGAHAREDTPDRDDENWMKHTMAYFDESTGRSTVEYRPVHYHTLDEGECKTVPPVARVY 640
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match: A0A7S3JSD7_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSD7_9STRA) HSP 1 Score: 765 bits (1975), Expect = 3.360e-267 Identity = 399/600 (66.50%), Postives = 445/600 (74.17%), Query Frame = 3 Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKD-SDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529 I+DH++D VVGAGGAGLRAAMG AEAG KT C+TKLFPTRSHTVAAQGGINAALGNMT+D YDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQA+RCACAADRTGHAMLHTLYGRSLAFDTT +HR A NTVLATGGYGRA+FSCTSAHTCTGDG AMA+RAG+ +DPEFVQFHPTGIYGAGCLITEGCRGEGGILRN++GERFMER ETAQIF+GVDVTK+PIPVLPTVHYNMGGIPTN+ GEVIR KD + G + DHDA+VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I++PG + PK+ EKS+A L++ RFA G TP A +R +QK MQDHAAVYRTQESLA+G ++D V + F DV + DRSLIWNTDL+E +EL NLL NAA T+HAAE RKESRGAHAREDF R D WMKH++ Y D ++ + +V+YRP+H +TLDE E VPP RVY Sbjct: 34 IIDHDFDVCVVGAGGAGLRAAMGSAEAGFKTVCVTKLFPTRSHTVAAQGGINAALGNMTKDDWRWHSYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAFRCACAADRTGHAMLHTLYGRSLAFDTTYLIEYFALDLIMDDDGACVGVLALCMEDGSLHRIHAANTVLATGGYGRAYFSCTSAHTCTGDGNAMALRAGLAAQDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAQGERFMERYAPSAKDLASRDVVSRAMTLEIQQGRGVGKDKDHIFLHLDHLPPELLAERLPGISETAQIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVIRQIKDEATGEIIDHDAVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAQIAQPGGQKKPLPKNAGEKSIADLNQIRFAQGPTPTAHIRHSMQKVMQDHAAVYRTQESLAQGAQKIDQVCAAFADVGIKDRSLIWNTDLVETLELRNLLPNAATTVHAAEKRKESRGAHAREDFTTRDDQNWMKHTVCYVDPESFQVQVDYRPIHYYTLDENEFATVPPVARVY 633 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig105.353.1 >prot_E-siliculosus-1a_F_contig105.353.1 ID=prot_E-siliculosus-1a_F_contig105.353.1|Name=mRNA_E-siliculosus-1a_F_contig105.353.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=489bp MGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTEDMYDTVKGSDWback to top mRNA from alignment at E-siliculosus-1a_F_contig105:105..11810+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig105.353.1 ID=mRNA_E-siliculosus-1a_F_contig105.353.1|Name=mRNA_E-siliculosus-1a_F_contig105.353.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11706bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:105..11810+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig105:105..11810+ >mRNA_E-siliculosus-1a_F_contig105.353.1 ID=mRNA_E-siliculosus-1a_F_contig105.353.1|Name=mRNA_E-siliculosus-1a_F_contig105.353.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2934bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:105..11810+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |