mRNA_E-siliculosus-1a_F_contig1049.346.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1049.346.1 vs. uniprot
Match: D7FTA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA0_ECTSI) HSP 1 Score: 442 bits (1138), Expect = 1.030e-151 Identity = 245/274 (89.42%), Postives = 255/274 (93.07%), Query Frame = 1 Query: 1 LLKTCPLAAA----------QDRQNLTSSLENVSACCCFCVWCHTLCDLDSFRIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQERSSQTLGNLRAEQLVKEWNESFGPDAPLLRDAASLGVPLSAGFVGSGTGDGEAEETKGNNDASSDGNXXXXXXXGDAEGLKGGVSPGKVAEALRQLAKRAEDAERGSDEATKDRAASVSGLRGALDAHVAVSAESSAADRHMHQQERAALIDQQEK 792
LLKTCPLAAA QDRQNLTSSLENV ACCCFC WCHTLC+LDSFRIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQ+RSSQTLGNL+AEQL++EWNESFGPDAPLLRDAASLGVPLSAG VGS TGDG A ETKG+NDASSDGN XXXXX DAEGL+GGVSPGKVAEALRQLAKRAEDAERGSDEATKDRA+SV+GLRGALDAHVAVSAESSAADRHMHQQERAAL+DQQEK
Sbjct: 9 LLKTCPLAAAVLVHTPNCIIQDRQNLTSSLENVRACCCFCTWCHTLCNLDSFRIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQDRSSQTLGNLQAEQLLEEWNESFGPDAPLLRDAASLGVPLSAGVVGSETGDGGAGETKGDNDASSDGNTGXXXXXXDAEGLRGGVSPGKVAEALRQLAKRAEDAERGSDEATKDRASSVAGLRGALDAHVAVSAESSAADRHMHQQERAALVDQQEK 282
BLAST of mRNA_E-siliculosus-1a_F_contig1049.346.1 vs. uniprot
Match: A0A6H5KMF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF9_9PHAE) HSP 1 Score: 344 bits (882), Expect = 3.920e-108 Identity = 202/222 (90.99%), Postives = 206/222 (92.79%), Query Frame = 1 Query: 127 RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQERSSQTLGNLRAEQLVKEWNESFGPDAPLLRDAASLGVPLSAGFVGSGTGDGEAEETKGNNDASSDGNXXXXXXXGDAEGLKGGVSPGKVAEALRQLAKRAEDAERGSDEATKDRAASVSGLRGALDAHVAVSAESSAADRHMHQQERAALIDQQEK 792
RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQERSSQTLGNL+AEQL+KEWNESFGPDAPLLRDAASLGVPLSAGFV S GDG A ETKG NDAS XXXXXXX DAEGL+ VSP VAEALRQLAKRAEDAERGSDEATKDRAASV+GLRGALDAHVAVSAESSAADRHMHQQERAALIDQ EK
Sbjct: 12 RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQERSSQTLGNLQAEQLLKEWNESFGPDAPLLRDAASLGVPLSAGFVVSEAGDGGAGETKGGNDASXXXXXXXXXXXXDAEGLRRRVSPANVAEALRQLAKRAEDAERGSDEATKDRAASVAGLRGALDAHVAVSAESSAADRHMHQQERAALIDQHEK 233
BLAST of mRNA_E-siliculosus-1a_F_contig1049.346.1 vs. uniprot
Match: A0A836CIS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIS0_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.360e-18 Identity = 47/66 (71.21%), Postives = 51/66 (77.27%), Query Frame = 1 Query: 121 SFRIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALE 318
S R+GP GVSSGVSLR LP + + ICQHYEEKCSG YASDSAAARY+F LSREVQ AALE
Sbjct: 44 SHRVGPPGVSSGVSLRHLPDTTFKAVAAICQHYEEKCSGKYASDSAAARYVFDLSREVQSQLAALE 109
BLAST of mRNA_E-siliculosus-1a_F_contig1049.346.1 vs. uniprot
Match: A0A5A8CJG2_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CJG2_CAFRO) HSP 1 Score: 76.6 bits (187), Expect = 5.600e-14 Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 1 Query: 127 RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQERSSQTLGNLRAEQLVKEWNESF 390
R+ P +SSGVS+R LP A+L D+ + CQHYE KC+G Y S AR LF LSR++Q ++ +L Q + E++ KEW F
Sbjct: 34 RVAPFPISSGVSVRRLPEAKLVDIVRCCQHYESKCAGKYDKGSIGARLLFDLSRDIQDLSQSLVQRDDDRDDRVRHLERVTKEWTSVF 121
BLAST of mRNA_E-siliculosus-1a_F_contig1049.346.1 vs. uniprot
Match: A0A7S2PFX9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PFX9_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 6.960e-13 Identity = 43/89 (48.31%), Postives = 51/89 (57.30%), Query Frame = 1 Query: 127 RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQERSSQTLGNLRAEQLVKEWNESFG 393
R+GP GVSSGVS R LP L+ + IC HYE KCSG Y ++ A+RYLFQ+ REV AL + E V EWNE FG
Sbjct: 47 RVGPKGVSSGVSFRKLPDTSLQAIINICSHYEAKCSGKY--ETLASRYLFQMGREVLSQVYALAEAAKEDEKVFQELEGAVHEWNEHFG 133
BLAST of mRNA_E-siliculosus-1a_F_contig1049.346.1 vs. uniprot
Match: A0A5A8DYU9_CAFRO (Abhydrolase_3 domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DYU9_CAFRO) HSP 1 Score: 76.6 bits (187), Expect = 1.760e-12 Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 1 Query: 127 RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQERSSQTLGNLRAEQLVKEWNESF 390
R+ P +SSGVS+R LP A+L D+ + CQHYE KC+G Y S AR LF LSR++Q ++ +L Q + E++ KEW F
Sbjct: 252 RVAPFPISSGVSVRRLPEAKLVDIVRCCQHYESKCAGKYDKGSIGARLLFDLSRDIQDLSQSLVQRDDDRDDRVRHLERVTKEWTSVF 339
BLAST of mRNA_E-siliculosus-1a_F_contig1049.346.1 vs. uniprot
Match: A0A5A8DDF6_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDF6_CAFRO) HSP 1 Score: 70.5 bits (171), Expect = 2.340e-11 Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 1 Query: 127 RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQ 321
R+ P +SSGVS+R LP A+L D+ + CQHYE KC+G Y S AR LF LSR++Q ++ +L Q
Sbjct: 34 RVAPFPISSGVSVRRLPEAKLVDIVRCCQHYESKCAGKYDKGSIGARLLFDLSRDIQDLSQSLVQ 98
BLAST of mRNA_E-siliculosus-1a_F_contig1049.346.1 vs. uniprot
Match: A0A2R5GHD7_9STRA (Protein kinase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHD7_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.560e-10 Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 1 Query: 136 PAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQERSSQTLGNLRAEQLVKEWNESFGP----DAPLLRDAASLGVPLSAGFVGSGTG 471
PAG G+SLR+ A E L + C YEEKC+G Y S AARYLF+L+REVQ+ A LE+ + Q E ++EW+E+FGP D +++A L V A + S G
Sbjct: 753 PAG-RIGMSLRARRRASPETLRETCWFYEEKCAGKYDCKSLAARYLFELAREVQEQADDLERLHAQQEDRTNYLEACMREWDETFGPVRSLDKSFVKEAEQLRVVDGARMLASSIG 867
BLAST of mRNA_E-siliculosus-1a_F_contig1049.346.1 vs. uniprot
Match: K0TQI1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQI1_THAOC) HSP 1 Score: 67.4 bits (163), Expect = 4.750e-9 Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1 Query: 127 RIGPAG-VSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQ 321
R+GP G VSSG+S R LPP L+++ KIC+HY+ KCSG Y S A+RY++Q++ E++ + AL++
Sbjct: 534 RVGPKGIVSSGISFRDLPPPSLDEIKKICEHYQVKCSGTYKS--LASRYVYQMATEIEGLVDALKE 597 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1049.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1049.346.1 >prot_E-siliculosus-1a_F_contig1049.346.1 ID=prot_E-siliculosus-1a_F_contig1049.346.1|Name=mRNA_E-siliculosus-1a_F_contig1049.346.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=264bp LLKTCPLAAAQDRQNLTSSLENVSACCCFCVWCHTLCDLDSFRIGPAGVSback to top mRNA from alignment at E-siliculosus-1a_F_contig1049:418..4862- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1049.346.1 ID=mRNA_E-siliculosus-1a_F_contig1049.346.1|Name=mRNA_E-siliculosus-1a_F_contig1049.346.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4445bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1049:418..4862- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1049:418..4862- >mRNA_E-siliculosus-1a_F_contig1049.346.1 ID=mRNA_E-siliculosus-1a_F_contig1049.346.1|Name=mRNA_E-siliculosus-1a_F_contig1049.346.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1584bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1049:418..4862- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |