mRNA_E-siliculosus-1a_F_contig1047.342.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: A0A6H5JNJ8_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNJ8_9PHAE) HSP 1 Score: 786 bits (2031), Expect = 5.420e-287 Identity = 392/408 (96.08%), Postives = 396/408 (97.06%), Query Frame = 1 Query: 1 MAADSTSS-KIWQELRKLRDDIPPPVDNNTDSNKGDQESSACYKDFAAFAACNEVRVAIGRSSALPRDQFLAIFTQLVAGPRLDELLDLFKLSRSPPHPALQYACLVALHGVAELSDRRKDLLTRPDVVKELCAVMASPRQRLVTPTSAGAGGVEIVNAAAGAITTITGLFTSNGPLEPPFAKLWVELGAVSALASCLENHAVFDRSNPVSSDLPLCFFLIATSLLAGAADSVSEEDKLRLGKAWLTLFLEATRWIADEAADLLADFYTRPNWLKNIVGRMPEKLRASAVAAARECEREGTGSGSSSWKGGKTDRLALALLCGNAYNWDAEGELVGRRCAGPRCDRVQKCGHGGGNPHPAASGDEGGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 1221
M ADSTSS KIWQELRKLRDDIPPPVDNNT SNKGDQESS CYKDFAAFAACNEVRVAIGRSSALPRDQFLAIF QLVAGPRLDELL+LFK SRSPPHPALQYACLVALHGVAELSDRRKDLLTRPDVVKELCAVMASPRQRLVTPTSAGAGGVEIVNAAAGA+TTITGLFTSNGPLEPP+AKLWVELGAVSALASCLENHAVFDRSNPVS DLPLCFFLIATSLLAGAADSVSEEDKLRLGKAWLT+FLEATRWIADEAADLLADFYTRPNWLKNIV RMPEKLRASAVAAARECEREGTGSGSS WKGGK DRLALALLCGNAYNWDA GELVGRRCAGPRCDRVQKCGHGGGNPHPAAS DEGGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS
Sbjct: 1 MTADSTSSSKIWQELRKLRDDIPPPVDNNTGSNKGDQESSTCYKDFAAFAACNEVRVAIGRSSALPRDQFLAIFRQLVAGPRLDELLELFKFSRSPPHPALQYACLVALHGVAELSDRRKDLLTRPDVVKELCAVMASPRQRLVTPTSAGAGGVEIVNAAAGAVTTITGLFTSNGPLEPPYAKLWVELGAVSALASCLENHAVFDRSNPVSGDLPLCFFLIATSLLAGAADSVSEEDKLRLGKAWLTVFLEATRWIADEAADLLADFYTRPNWLKNIVERMPEKLRASAVAAARECEREGTGSGSSPWKGGKADRLALALLCGNAYNWDAGGELVGRRCAGPRCDRVQKCGHGGGNPHPAASEDEGGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 408
BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: D8LGK8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK8_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.270e-9 Identity = 60/207 (28.99%), Postives = 83/207 (40.10%), Query Frame = 1 Query: 661 ATSLLAGAADSVSEEDKLRLGKAWLTLFLEATRWIADEAA------------------------DLLADFYTRPNWLKNIVGRMPEKLRASAVAAARECEREGTGSGSSSWKGGKTDRLALALLCGNAYNWDAEGELVGRRCAGPRCDRVQ-KCGHGGGNPHPAASGDEGGDGAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKAC 1206
A +++ D S + RL +A+L L E W+A A +LL + + L P +LRA AVAAAR+CE +GT + G +LA L G + RR AG +++ K N A G G+ + FK CS+C YCS ECQKA WK H+ C
Sbjct: 279 AGAVVDAETDKASRAARQRLAEAFLRLLAERREWVARSLAMAANASPTDLSGGGATAAAPVTINNLLVNSLAHADLLGAFTRLTPVRLRAQAVAAARQCETDGT------FAPGFGAQLARLLGLGGQQE-------LNRRMAGHTVQKIKNKEAARAANIKCAMCGKRQGNASGGAKFKVCSRCQVAMYCSGECQKAHWKTHKMEC 472
BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: A0A8K0WV57_9HYPO (Uncharacterized protein n=1 Tax=Stachybotrys elegans TaxID=80388 RepID=A0A8K0WV57_9HYPO) HSP 1 Score: 55.8 bits (133), Expect = 2.060e-5 Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 1 Query: 1114 VAFKRCSQCHAVGYCSRECQKAGWKKHRKAC 1206
V+ KRC++CH YCSRECQKA WK+HR+ C
Sbjct: 15 VSLKRCAKCHTTPYCSRECQKADWKQHRRTC 45
BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: S8AH82_DACHA (MYND-type zinc finger protein samB n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8AH82_DACHA) HSP 1 Score: 55.1 bits (131), Expect = 4.380e-5 Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1 Query: 1108 ASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 1221
AS K C++C +V YCSR+CQKA WK H+K C VN+
Sbjct: 15 ASEDLKHCARCKSVNYCSRDCQKANWKHHKKVCGKVNT 52
BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: A0A319E0C8_ASPSB (MYND-type zinc finger protein samB n=1 Tax=Aspergillus sclerotiicarbonarius (strain CBS 121057 / IBT 28362) TaxID=1448318 RepID=A0A319E0C8_ASPSB) HSP 1 Score: 55.1 bits (131), Expect = 5.910e-5 Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1 Query: 1102 GAASVAFKRCSQCHAVGYCSRECQKAGWKKHRKACS 1209
G+ASV KRC++C YCSR+CQKA WKKH++ CS
Sbjct: 17 GSASVPLKRCAKCKTQWYCSRDCQKADWKKHKQICS 52
BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: A0A0F9X4H5_TRIHA (MYND-type zinc finger protein samB n=4 Tax=Trichoderma TaxID=5543 RepID=A0A0F9X4H5_TRIHA) HSP 1 Score: 54.7 bits (130), Expect = 6.980e-5 Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 Query: 1114 VAFKRCSQCHAVGYCSRECQKAGWKKHRKACSAVNS 1221
V+ KRC++CH YCSR+CQKA WK H+K C+ +S
Sbjct: 15 VSLKRCAKCHTTPYCSRDCQKADWKAHKKICAKNHS 50
BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Match: A0A0N0RZN0_9EURO (MYND-type zinc finger protein samB n=1 Tax=Penicillium nordicum TaxID=229535 RepID=A0A0N0RZN0_9EURO) HSP 1 Score: 54.7 bits (130), Expect = 8.310e-5 Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1 Query: 1117 AFKRCSQCHAVGYCSRECQKAGWKKHRKACSA 1212
A + CS+CH YCSR+CQKA WKKH+K C A
Sbjct: 218 ALRNCSRCHKAKYCSRDCQKADWKKHKKVCKA 249 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1047.342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1047.342.1 >prot_E-siliculosus-1a_F_contig1047.342.1 ID=prot_E-siliculosus-1a_F_contig1047.342.1|Name=mRNA_E-siliculosus-1a_F_contig1047.342.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=408bp MAADSTSSKIWQELRKLRDDIPPPVDNNTDSNKGDQESSACYKDFAAFAAback to top mRNA from alignment at E-siliculosus-1a_F_contig1047:35758..37259- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1047.342.1 ID=mRNA_E-siliculosus-1a_F_contig1047.342.1|Name=mRNA_E-siliculosus-1a_F_contig1047.342.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1502bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:35758..37259- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1047:35758..37259- >mRNA_E-siliculosus-1a_F_contig1047.342.1 ID=mRNA_E-siliculosus-1a_F_contig1047.342.1|Name=mRNA_E-siliculosus-1a_F_contig1047.342.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2448bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:35758..37259- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |