mRNA_E-siliculosus-1a_F_contig1047.341.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: D8LTH1_ECTSI (Shikimate Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH1_ECTSI) HSP 1 Score: 440 bits (1131), Expect = 5.520e-156 Identity = 222/224 (99.11%), Postives = 222/224 (99.11%), Query Frame = 1 Query: 1 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEE FRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW Sbjct: 1 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEGFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWA 224
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A6H5JIK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK7_9PHAE) HSP 1 Score: 439 bits (1130), Expect = 9.790e-155 Identity = 222/224 (99.11%), Postives = 223/224 (99.55%), Query Frame = 1 Query: 1 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDM+PKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVN ILEFIDSNPPKWQKWKEKANAAGIEWV Sbjct: 71 MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMKPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNAILEFIDSNPPKWQKWKEKANAAGIEWV 294
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A835ZK89_9STRA (Shikimate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK89_9STRA) HSP 1 Score: 256 bits (653), Expect = 4.480e-83 Identity = 127/215 (59.07%), Postives = 164/215 (76.28%), Query Frame = 1 Query: 46 LRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQA------DVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672 +RLQ AELGS+LRGTNV+FVGMMGTGK++VAR LAD MGRY F+DTD IIE+L+ A V +VF + GEE FR +E++VL+++HSYVK+ VATGGGIV E +NWGK+QTG+VVWLDM DI +RLS + EEV+KR LL G D KL+ + ++RK Y QA DV V + P+D VD + + V+ + +FIDSNPPKWQ+WK+ A A+GI WV Sbjct: 18 IRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 232
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A7R9UH62_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH62_9STRA) HSP 1 Score: 210 bits (535), Expect = 6.360e-65 Identity = 109/205 (53.17%), Postives = 139/205 (67.80%), Query Frame = 1 Query: 16 GLSMEV-EPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKW 627 GL +V E + + L SRL GT+++FVGMMGTGKST R LA + Y FLDTDT+IE G +F K+GEE FR++ES V+DQ +Y ++C+ATGGG V N+NWGKMQTG+VVWL MEP++I ER S + EEV KRPLL G D KL E+L+KRK +Y ADV VQL P D V+++ V I F+D NPPK+ Sbjct: 38 GLRADVQEEKAVEDEFTRLASRLYGTSIYFVGMMGTGKSTTGRELAKKLPGYSFLDTDTVIEAYAGQDCSAIFEKEGEEGFRNIESMVMDQACAYRRLCIATGGGAVLRNQNWGKMQTGIVVWLQMEPEEIAERFSGNDEEVEKRPLLQGGDAVDKLREILDKRKEKYEVADVHVQLSPGDSVEEVVERVCGKIHRFMDENPPKF 242
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A6U3Q8M5_9STRA (Shikimate kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q8M5_9STRA) HSP 1 Score: 210 bits (535), Expect = 2.280e-64 Identity = 108/220 (49.09%), Postives = 154/220 (70.00%), Query Frame = 1 Query: 16 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPED-GVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672 G M ++P A LG RL+G+N++FVGMMG+GKS V A+A MG Y FLDTDTIIE + A++ E+FA++GE+ FR +ESQVLD VH++V+ V+TGGGIV + NW K+Q+G+V+W+D+ P I+ R+ KD ++ RPLL D+P LE+LLE+RKP+Y+QADV +++ E ++D+ VV + FID NPP W+ K KA A G++WV Sbjct: 85 GEGMTIDP------ARLLGPRLQGSNLYFVGMMGSGKSAVGDAVARRMGSYNFLDTDTIIESVTNATITEIFAQEGEDTFRDIESQVLDSVHAHVRCVVSTGGGIVKKLSNWAKLQSGVVIWIDVPPSVIYNRI-KDKDD---RPLLQNDNPLETLEKLLEERKPRYSQADVRIEVNDESMSIEDVASKVVQDLHNFIDENPPAWKIAKAKAQAEGLDWV 294
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A7S1Z366_TRICV (Shikimate kinase n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z366_TRICV) HSP 1 Score: 204 bits (519), Expect = 1.290e-61 Identity = 104/219 (47.49%), Postives = 148/219 (67.58%), Query Frame = 1 Query: 16 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672 G M+++P A LG RL+G+N++F+GMMG+GKS V +A MG Y FLDTD+IIE+ G ++ E+F +GEE FR VE Q+LD VH+YV+ V+TGGGIV +NW K+QTG+VVWLD++P+ I +R+ D RPLL DDP KL++LL +R+ +YAQAD+ +++ + D + V+ + FID NPP W+K K KA A G++WV Sbjct: 112 GEGMKIDP------ARLLGPRLQGSNLYFIGMMGSGKSAVGDIVARRMGTYNFLDTDSIIEKATGMTIPEIFEAEGEEGFRQVEGQILDSVHAYVRCVVSTGGGIVCRLQNWAKLQTGLVVWLDVDPEVIIKRIEGD----ENRPLLQTDDPLKKLKDLLGEREERYAQADLRIEVTEDMDEDAVANMVIKELHYFIDENPPAWKKAKAKAQADGLDWV 320
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A7R9ZGS2_9STRA (Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGS2_9STRA) HSP 1 Score: 202 bits (513), Expect = 4.890e-61 Identity = 103/219 (47.03%), Postives = 146/219 (66.67%), Query Frame = 1 Query: 16 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672 G M+++P A LG RL+G+N++FVGMMG+GKS V +A MG Y FLDTD IIE+ S+ E+F +GEE FR E+QVLD VH+YV+ ++TGGG+V NW K+QTG+V+WLD++P+ I +R+ D RPLL DDP KL++LLE+R+ +Y+QADV +++ + + + VV + FID NPP W+K K KA A G++WV Sbjct: 87 GEGMKIDP------ARLLGPRLQGSNLYFVGMMGSGKSAVGDVVARRMGTYNFLDTDEIIEKATAMSIPEIFDAEGEEGFREAEAQVLDSVHAYVRCVISTGGGLVCRMGNWSKLQTGVVIWLDVDPELIIKRIEGD----TNRPLLQADDPLQKLKDLLEERREKYSQADVRIEVTEDMDENAVADLVVKELHNFIDENPPAWKKAKAKAQAEGLDWV 295
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: K0RFC3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RFC3_THAOC) HSP 1 Score: 200 bits (509), Expect = 1.190e-60 Identity = 97/202 (48.02%), Postives = 142/202 (70.30%), Query Frame = 1 Query: 67 LGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672 L RLRG N++ +GMMG+GKS V ALA MG Y FLDTD I+E +G S+ E+F K+GE+AFR E+QVLD VH++V+ + TGGG+V+ N+NW K+QTG+V++L +P+ I++R+ E RPLL DDP L++L E+R+ +Y QADVT++++ V+ +T + + +FID NPP W++ KEKA A G++WV Sbjct: 81 LSPRLRGCNLYLIGMMGSGKSAVGDALARRMGTYNFLDTDVILERAVGMSIPEIFEKEGEDAFRDAEAQVLDSVHAHVRCVIGTGGGLVTRNQNWAKLQTGLVLYLKTDPETIYKRI-----EGTDRPLLQTDDPLATLKDLTEERRGKYEQADVTIEVEDGMDVEAVTDMCIRMLHDFIDDNPPAWKQAKEKAQADGLDWV 277
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: K0SPY6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SPY6_THAOC) HSP 1 Score: 200 bits (509), Expect = 1.340e-60 Identity = 97/202 (48.02%), Postives = 142/202 (70.30%), Query Frame = 1 Query: 67 LGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWV 672 L RLRG N++ +GMMG+GKS V ALA MG Y FLDTD I+E +G S+ E+F K+GE+AFR E+QVLD VH++V+ + TGGG+V+ N+NW K+QTG+V++L +P+ I++R+ E RPLL DDP L++L E+R+ +Y QADVT++++ V+ +T + + +FID NPP W++ KEKA A G++WV Sbjct: 85 LSPRLRGCNLYLIGMMGSGKSAVGDALARRMGTYNFLDTDVILERAVGMSIPEIFEKEGEDAFRDAEAQVLDSVHAHVRCVIGTGGGLVTRNQNWAKLQTGLVLYLKTDPETIYKRI-----EGTDRPLLQTDDPLATLKDLTEERRGKYEQADVTIEVEDGMDVEAVTDMCIRMLHDFIDDNPPAWKQAKEKAQADGLDWV 281
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Match: A0A7S1XQA2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQA2_9STRA) HSP 1 Score: 197 bits (500), Expect = 8.600e-60 Identity = 101/209 (48.33%), Postives = 137/209 (65.55%), Query Frame = 1 Query: 25 MEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKAN 651 +E EP + L RL+G +++ VGMMGTGKST + LA MG Y FLDTDT+IE G +F ++GEEAFR +E+ V+DQ +Y ++CVATGGG+V KNW KMQTG+VVWL+M+P DI ERLS +EV KRPLLA DP KL E+L++R+ +YA AD+T+ + + V + + FID NPP++ + E AN Sbjct: 35 LEQEPD----EYVRLAERLQGASLYLVGMMGTGKSTAGKELAKRMGGYSFLDTDTVIEAYAGRDCATIFEEEGEEAFRDIETMVMDQACAYKRLCVATGGGMVLRTKNWSKMQTGIVVWLNMDPADIAERLSASSDEVTKRPLLAEADPAAKLTEILDERRDRYAIADITLDMTKXXXXXXVVRMVCSRVHSFIDKNPPRFTESSEYAN 239 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1047.341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1047.341.1 >prot_E-siliculosus-1a_F_contig1047.341.1 ID=prot_E-siliculosus-1a_F_contig1047.341.1|Name=mRNA_E-siliculosus-1a_F_contig1047.341.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=225bp MRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALAback to top mRNA from alignment at E-siliculosus-1a_F_contig1047:31919..35052+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1047.341.1 ID=mRNA_E-siliculosus-1a_F_contig1047.341.1|Name=mRNA_E-siliculosus-1a_F_contig1047.341.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3134bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:31919..35052+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1047:31919..35052+ >mRNA_E-siliculosus-1a_F_contig1047.341.1 ID=mRNA_E-siliculosus-1a_F_contig1047.341.1|Name=mRNA_E-siliculosus-1a_F_contig1047.341.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1350bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:31919..35052+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |