mRNA_E-siliculosus-1a_F_contig1047.339.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1047.339.1 vs. uniprot
Match: D8LTH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH3_ECTSI) HSP 1 Score: 470 bits (1210), Expect = 1.080e-160 Identity = 259/277 (93.50%), Postives = 262/277 (94.58%), Query Frame = 1 Query: 925 MILYGTAWMTTSLGPVAAAGVIGQPLSRALVATCAAHASFAAIKFSLAILAMSNFPPIYAPPPRRRPNNKPTXXXXPGNKPPTKAPRRKLEFPSLSPRRRGPRPAPVSALPGTRIQVRRSARSVPKLWLMALTAAGGPAMGAVGSAVAWKAGLVAMPAALSSLSRGSVISALLAGTLCYGGAGTEVVARWAVFQGIMGAPFAALLSPSALMLVYLCNYYWRVAKSRRSGPGSPPPGVGAKAKAGGGAPSVGVEQEGKDTGDETDEAKKGDTKAKEKD 1755
MILYGTAWMTTSLGPVAAAGVIGQPLSRALVATCAAHASFAAIKFSLAILAMSNFPP+YAPPPRR PNNKPT P N KAPRRKLEFPSLSPRRRGP PAPVSA+PGTRIQVRRSARSVPKLWLMALTAAGGPAMGAVGSAVAWKAGLVAMPAALSSLSRGSVISALLAGTLCYGGAGTEVVARWAVFQGIMGAPFAALLSPSALMLVYLCNYYWRVAKSRRSGPGS PPGVGA AK GGGAPSVGVEQEGKD GDETDEA+KGDTKAKEKD
Sbjct: 1 MILYGTAWMTTSLGPVAAAGVIGQPLSRALVATCAAHASFAAIKFSLAILAMSNFPPVYAPPPRRHPNNKPTPPTTPRNXXXXKAPRRKLEFPSLSPRRRGP-PAPVSAVPGTRIQVRRSARSVPKLWLMALTAAGGPAMGAVGSAVAWKAGLVAMPAALSSLSRGSVISALLAGTLCYGGAGTEVVARWAVFQGIMGAPFAALLSPSALMLVYLCNYYWRVAKSRRSGPGSLPPGVGANAKGGGGAPSVGVEQEGKDAGDETDEAEKGDTKAKEKD 276
BLAST of mRNA_E-siliculosus-1a_F_contig1047.339.1 vs. uniprot
Match: D8LTH4_ECTSI (BolA protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTH4_ECTSI) HSP 1 Score: 321 bits (822), Expect = 7.690e-104 Identity = 170/172 (98.84%), Postives = 170/172 (98.84%), Query Frame = 1 Query: 46 MMSTTRQLLLGACLIAGRTGAFHVPVASSLSQHTRSTLAVAGKCNSASVRRRFRSAGFVMAAAASGEMQETIEARLSEALSPVHLEVINESHMHSGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKADPSM 561
MMSTTRQLLLGACLIAGRTGAFHVPVASSLSQHTRSTLAVAGKCNSASVRRRFRSAGF MAAA SGEMQETIEARLSEALSPVHLEVINESHMHSGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKADPSM
Sbjct: 1 MMSTTRQLLLGACLIAGRTGAFHVPVASSLSQHTRSTLAVAGKCNSASVRRRFRSAGFAMAAA-SGEMQETIEARLSEALSPVHLEVINESHMHSGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKADPSM 171
BLAST of mRNA_E-siliculosus-1a_F_contig1047.339.1 vs. uniprot
Match: A0A2M7G1L8_9BACT (Transcriptional regulator n=1 Tax=bacterium (Candidatus Blackallbacteria) CG17_big_fil_post_rev_8_21_14_2_50_48_46 TaxID=2014261 RepID=A0A2M7G1L8_9BACT) HSP 1 Score: 123 bits (309), Expect = 6.550e-30 Identity = 60/101 (59.41%), Postives = 77/101 (76.24%), Query Frame = 1 Query: 244 EMQETIEARLSEALSPVHLEVINESHMHSGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSK 546
++Q +E+RLSEAL+P+HLEV+NESH HSGPA +SHFKVI VSD FEG+ +ARHR +NAL A+ + +HALS+Q TP++W A PSPPC GGSK
Sbjct: 2 QVQHDLESRLSEALAPLHLEVLNESHKHSGPAGDSHFKVIAVSDHFEGQNRVARHRQINALLADLIGQPIHALSLQLFTPSEWAARAEVALPSPPCRGGSK 102
BLAST of mRNA_E-siliculosus-1a_F_contig1047.339.1 vs. uniprot
Match: A0A831ZLS3_9DELT (BolA/IbaG family iron-sulfur metabolism protein n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A831ZLS3_9DELT) HSP 1 Score: 122 bits (306), Expect = 1.640e-29 Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 1 Query: 247 MQETIEARLSEALSPVHLEVINESHMHSGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKAD 552
M IEA+L EA +P HLEVIN+SH H G ++HFKVIVV+D F G+ LL+RHR VN L EE+ +HAL+I+ TPAQW A G + PSPPCMGGSK+D
Sbjct: 3 MHARIEAKLREAFTPAHLEVINQSHHHGGSGTQTHFKVIVVADTFAGERLLSRHRRVNNLLTEELTQGVHALTIEALTPAQWTARGGAIRPSPPCMGGSKSD 104
BLAST of mRNA_E-siliculosus-1a_F_contig1047.339.1 vs. uniprot
Match: B3RW48_TRIAD (Uncharacterized protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RW48_TRIAD) HSP 1 Score: 121 bits (303), Expect = 4.380e-29 Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 1 Query: 241 GEMQETIEARLSEALSPVHLEVINESHMHSGP-AKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGS 543
G + +I +LSE L P+HL+VINES+MH+ P E+HFKVI+VSD F GK LL RHRMVN L AEE+ G +HALSIQ KT QWE H + SPPC+GGS
Sbjct: 2 GLTETSIHNKLSERLKPIHLDVINESNMHNVPKGSETHFKVIIVSDLFNGKSLLQRHRMVNELLAEELSGSVHALSIQAKTSQQWEDSNHHITKSPPCLGGS 103
BLAST of mRNA_E-siliculosus-1a_F_contig1047.339.1 vs. uniprot
Match: UPI001ABE9501 (bolA-like protein 1 n=3 Tax=Bufo TaxID=8383 RepID=UPI001ABE9501) HSP 1 Score: 122 bits (305), Expect = 7.440e-29 Identity = 67/107 (62.62%), Postives = 77/107 (71.96%), Query Frame = 1 Query: 247 MQETIEARLSEALSPVHLEVINESHMHS-GPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKADPSMS 564
++ +I A+LSE L P HLEV NESHMH+ P E+HFKV+VVSD F GK LL RHR+VN L EE+ G +HALSIQ KTP QWE E V SP CMGGSK DP MS
Sbjct: 32 VETSIRAKLSENLQPCHLEVHNESHMHAVPPGSETHFKVVVVSDVFGGKSLLQRHRLVNDLLKEELAGPVHALSIQAKTPQQWE-ENPTVTQSPGCMGGSKHDPQMS 137
BLAST of mRNA_E-siliculosus-1a_F_contig1047.339.1 vs. uniprot
Match: UPI0014024C0E (bolA-like protein 1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014024C0E) HSP 1 Score: 122 bits (305), Expect = 9.970e-29 Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = 1 Query: 229 AAASGEMQETIEARLSEALSPVHLEVINESHMHSGP-AKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSK 546
AA G +QE+I +L+ AL PVHL+V+NES MH+ P E+HFKV+VVS +FEG LLARHR+VN +E+ G +HALSIQ +TP QW + G +V PSPPC+GGSK
Sbjct: 37 AAPGGPVQESIREKLTRALGPVHLDVVNESGMHAVPRGSETHFKVVVVSAQFEGVSLLARHRLVNEALRDELVGCVHALSIQARTPEQWGSSGGRVDPSPPCLGGSK 143
BLAST of mRNA_E-siliculosus-1a_F_contig1047.339.1 vs. uniprot
Match: A0A8K1FC65_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC65_PYTOL) HSP 1 Score: 120 bits (301), Expect = 1.450e-28 Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 1 Query: 241 GEMQETIEARLSEALSPVHLEVINESHMHSGP-AKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKADP 555
G + + I +L+EA +P+HL V+NES+MH+ P E+HFKV+VVSD+F+GKPLL RHRMVNA+ EE+ +HALSIQGKTPAQWE + + V SP C+GG K DP
Sbjct: 6 GPIAQRIRNKLTEAFAPLHLAVMNESYMHNVPKGAETHFKVVVVSDKFDGKPLLQRHRMVNAVLEEELAQGVHALSIQGKTPAQWE-QNNTVQASPSCLGGMKNDP 110
BLAST of mRNA_E-siliculosus-1a_F_contig1047.339.1 vs. uniprot
Match: A0A1V9Z5Q5_9STRA (BolA-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5Q5_9STRA) HSP 1 Score: 120 bits (300), Expect = 2.310e-28 Identity = 63/103 (61.17%), Postives = 75/103 (72.82%), Query Frame = 1 Query: 241 GEMQETIEARLSEALSPVHLEVINESHMHSGP-AKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSK 546
G + I+ +L+ A P HLEV+NES+MH+ P E+HFKVIVVSD FEGKPL+ RHRMVNA+ EE+ G +HALSIQ KTPAQWEA V PSP C GG K
Sbjct: 22 GPIFSAIQTKLASAFVPTHLEVLNESYMHNVPKGSETHFKVIVVSDLFEGKPLIQRHRMVNAVLEEELNGGVHALSIQSKTPAQWEANS-TVRPSPTCQGGMK 123
BLAST of mRNA_E-siliculosus-1a_F_contig1047.339.1 vs. uniprot
Match: A0A662WN87_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WN87_9STRA) HSP 1 Score: 119 bits (299), Expect = 2.820e-28 Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 1 Query: 235 ASGEMQETIEARLSEALSPVHLEVINESHMHSGP-AKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSKADP 555
A+G + I +L EA +P HL+VINESHMHS P E+HFKV+VV+DEFEGKPL+ RHR+VNA+ +E+ +HALSIQ KTPAQW A +V PSP C GG DP
Sbjct: 7 AAGPVALRIREKLQEAFAPQHLDVINESHMHSVPKGSETHFKVVVVTDEFEGKPLIQRHRLVNAVLQQELDEGVHALSIQSKTPAQW-ASNSEVKPSPNCQGGMTRDP 113 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1047.339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1047.339.1 >prot_E-siliculosus-1a_F_contig1047.339.1 ID=prot_E-siliculosus-1a_F_contig1047.339.1|Name=mRNA_E-siliculosus-1a_F_contig1047.339.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=572bp MMSTTRQLLLGACLIAGRTGAFHVPVASSLSQHTRSTLAVAGKCNSASVRback to top mRNA from alignment at E-siliculosus-1a_F_contig1047:20215..24631+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1047.339.1 ID=mRNA_E-siliculosus-1a_F_contig1047.339.1|Name=mRNA_E-siliculosus-1a_F_contig1047.339.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4417bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:20215..24631+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1047:20215..24631+ >mRNA_E-siliculosus-1a_F_contig1047.339.1 ID=mRNA_E-siliculosus-1a_F_contig1047.339.1|Name=mRNA_E-siliculosus-1a_F_contig1047.339.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:20215..24631+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |