mRNA_E-siliculosus-1a_F_contig10459.332.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot
Match: D7FMG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG6_ECTSI) HSP 1 Score: 528 bits (1360), Expect = 6.360e-181 Identity = 306/353 (86.69%), Postives = 315/353 (89.24%), Query Frame = 2 Query: 14 GGERTR-PFHPSTAAAV*TREERGGDLMDPTTTAKLATTACKHRKDGQKFLTAVLETSQGIDVSVDSQELAGHVDEHFDGHAEGGKAIVEGFKRVSEHISDDGENVDDGILEDSAEVIVGAVESVANNEMVQNAGELVGDAVGVAHDALREGVKTGMEAVHGAARAMNKACGVTSRGMPDIEGVEERAERCAESMETQAEGLSDSAAEAFDRAREKAPGVLRAVDPDGTLEEAVEEVXXXXXXAVMEILGGEVAEEALEAAAGSIPVAGALIPSYYLVHGGVKAAAGVTSLAAAGTMALVGGVYGIAAAPFDGGASWGKVANASRGASVWGASIGAEGGLIAAKGAMGFADQV 1069
GGE P V R ER DLMDPT TAKLATTA K+RKDG KFLTAVLETS+GIDVSVDSQELAGHVDEHFD HAEGGKAIVEGFKRVSEHISDDG NVDDGILEDSAE IVGAVESVANNE+VQNAGELVGDAVGV HDALREGVKTG E VHGAARAMNKA GVTSRGMPDIEGVEERAER AESMETQAEGLSDSAAEAFDRARE AP VLRAVDPDGTLEEAV XXXXXX E+LGGE+AEEALEAA GSIPVAGALIPSYYL+HGGVKAAAG TSLAAAGTMALVGGVYG+AAAPFDGGASWGKVANASRGASVWGAS+GAEGGLI+AKGAMGFADQV
Sbjct: 105 GGENAPVPASYCRCCCVNERRERR-DLMDPTLTAKLATTAFKNRKDGDKFLTAVLETSRGIDVSVDSQELAGHVDEHFDSHAEGGKAIVEGFKRVSEHISDDGANVDDGILEDSAEAIVGAVESVANNEIVQNAGELVGDAVGVVHDALREGVKTGTEVVHGAARAMNKAGGVTSRGMPDIEGVEERAERYAESMETQAEGLSDSAAEAFDRARENAPDVLRAVDPDGTLEEAVXXXXXXXXXXXXEVLGGEIAEEALEAAVGSIPVAGALIPSYYLIHGGVKAAAGATSLAAAGTMALVGGVYGLAAAPFDGGASWGKVANASRGASVWGASMGAEGGLISAKGAMGFADQV 456
BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot
Match: A0A6H5JP55_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP55_9PHAE) HSP 1 Score: 346 bits (888), Expect = 1.190e-116 Identity = 198/232 (85.34%), Postives = 208/232 (89.66%), Query Frame = 2 Query: 341 LEDSAEVIVGAVESVANNEMVQNAGELVGDAVGVAHDALREGVKTGMEAVHGAARAMNKACGVTSRGMPDIEGVEERAERCAESMETQAEGLSDSAAEAFDRAREKAPGVLRAVDPDGTLEEAVEEVXXXXXXAVMEILGGEVAEEALEAAAGSIPVAGALIPSYYLVHGGVKAAAGVTSLAAAGTMALVGGVYGIAAAPFDGGASWGKVANASRGASVWGASIGAEGGLIA 1036
+EDSAE IVGAVESVA+NE+VQNAGE+VGDAVGV HDALREGVKTG E VHGAARAMN+A GVTSR MPDIEGV+ERAER AESMETQAEGL+DSAAEAFD ARE P VLRAVD DGTLE VEEV AV+EILGGEVAEE LEAAAGSIPVAGALIPSYYL+HGGVKAAA VTSLAAAGTMALVGGVYGI AAPFDGGASWGKVANASRG SVWGAS+GAEGGLIA
Sbjct: 1 MEDSAEAIVGAVESVASNEIVQNAGEVVGDAVGVVHDALREGVKTGTEVVHGAARAMNQAGGVTSRDMPDIEGVKERAERYAESMETQAEGLADSAAEAFDWARENTPDVLRAVDTDGTLEVMVEEVTQEAGEAVVEILGGEVAEEMLEAAAGSIPVAGALIPSYYLMHGGVKAAAEVTSLAAAGTMALVGGVYGIGAAPFDGGASWGKVANASRGVSVWGASMGAEGGLIA 232
BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot
Match: A0A6H5K4Z4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z4_9PHAE) HSP 1 Score: 279 bits (713), Expect = 9.470e-89 Identity = 174/262 (66.41%), Postives = 180/262 (68.70%), Query Frame = 2 Query: 332 DGILEDSAEVIVGAVESVANNEMVQNAGELVGDAVGVAHDALREGVKTGMEAVHGAARAMNKACGVTSRGMPDIEGVEERAERCAESMETQAEGLS----------------------------------------------------------DSAAEAFDRAREKAPGVLRAVDPDGTLEEAVEEVXXXXXXAVMEILGGEVAEEALEAAAGSIPVAGALIPSYYLVHGGVKAAAGVTSLAAAGTMALVGGVYGIAAAPF 943
DGILEDSAE IVGAVESVANNE+VQNAGE+VGDAVGV HDALREGVKTG E VHGAARAMN+A GVTSRGMPDIEGVEERAE A+SMETQAEGL AAEAFDRARE AP VL AVDPDGTLEE VEEV AV+E LGGEVAEE LEAAAGSIPVAGALIPSYYL+HGGVKAA GVTSLAAAGTM LVGGVYGIAAAPF
Sbjct: 45 DGILEDSAEAIVGAVESVANNEIVQNAGEVVGDAVGVVHDALREGVKTGTEVVHGAARAMNQASGVTSRGMPDIEGVEERAESFADSMETQAEGLXRCILLRGVKTGTEVVHGAARAMNQASGVTSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEAFDRARENAPDVLGAVDPDGTLEEVVEEVTQEAGEAVVESLGGEVAEELLEAAAGSIPVAGALIPSYYLMHGGVKAAVGVTSLAAAGTMTLVGGVYGIAAAPF 306
BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot
Match: A0A6H5KJK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK3_9PHAE) HSP 1 Score: 200 bits (508), Expect = 7.470e-60 Identity = 115/143 (80.42%), Postives = 122/143 (85.31%), Query Frame = 2 Query: 332 DGILEDSAEVIVGAVESVANNEMVQNAGELVGDAVGVAHDALREGVKTGMEAVHGAARAMNKACGVTSRGMPDIEGVEERAERCAESMETQAEGLSDSAAEAFDRAREKAPGVLRAVDPDGTLEEAVEEVXXXXXXAVMEILG 760
DGILEDSA+ IVGAVESVANNE+VQNAGE+VGDAVGV HDALREGVKTG E VHGA RAMN+A GV SRGMPDIEGVEERAE A+ METQAE +DSAAEAFDRARE AP VLRAVDPDGTLEE VEEV AV+EILG
Sbjct: 45 DGILEDSAKAIVGAVESVANNEIVQNAGEVVGDAVGVVHDALREGVKTGTEVVHGAVRAMNQAGGVASRGMPDIEGVEERAESYADLMETQAE-WADSAAEAFDRARENAPDVLRAVDPDGTLEEVVEEVTQEAGEAVVEILG 186
BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot
Match: A0A6H5K751_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K751_9PHAE) HSP 1 Score: 131 bits (330), Expect = 8.910e-35 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 2 Query: 92 MDPTTTAKLATTACKHRKDGQKFLTAVLETSQGIDVSVDSQELAGHVDEHFDGHAEGGKAIVEGFKRV 295
MDPTTTAKLATTACKHRKDGQKFLTAVLETSQGIDVSVDS+ELAGHVDEHFDGHAE GKAIVEGFKR
Sbjct: 1 MDPTTTAKLATTACKHRKDGQKFLTAVLETSQGIDVSVDSEELAGHVDEHFDGHAEAGKAIVEGFKRA 68 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10459.332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10459.332.1 >prot_E-siliculosus-1a_F_contig10459.332.1 ID=prot_E-siliculosus-1a_F_contig10459.332.1|Name=mRNA_E-siliculosus-1a_F_contig10459.332.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=326bp MDPTTTAKLATTACKHRKDGQKFLTAVLETSQGIDVSVDSQELAGHVDEHback to top mRNA from alignment at E-siliculosus-1a_F_contig10459:107..1672- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10459.332.1 ID=mRNA_E-siliculosus-1a_F_contig10459.332.1|Name=mRNA_E-siliculosus-1a_F_contig10459.332.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1566bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10459:107..1672- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10459:107..1672- >mRNA_E-siliculosus-1a_F_contig10459.332.1 ID=mRNA_E-siliculosus-1a_F_contig10459.332.1|Name=mRNA_E-siliculosus-1a_F_contig10459.332.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1956bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10459:107..1672- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |