mRNA_E-siliculosus-1a_F_contig1045.329.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1045.329.1 vs. uniprot
Match: A0A6H5JU62_9PHAE (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU62_9PHAE) HSP 1 Score: 2849 bits (7386), Expect = 0.000e+0 Identity = 1735/2048 (84.72%), Postives = 1775/2048 (86.67%), Query Frame = 2 Query: 2 VVRATIKLALATQPNSNPFARLMREQPRDTPVSSLNPQASVFVPSAGTANPPPSSGSNINHSSSSIPVGRRNSLPDGGAGRDHVH---GEGLRGHREAPAQTISRNRQGRGAGTKTHASGRRSRSGHNGREAGERGGSTEAIEAASRSESRRRQAPSSGSAARDSIPQGAHHAPQRTHLRGSGQAPPGGRPRNRNNRRRTHTRDQRLDPAHGHGMDNPPHPPRRKRAARQNEAEASTPRGSTLRRPCARADAHTDMRRRDGTGARGRPAGVDQPGSSKEIGPIRSPVVARLGEAVPEVPPVLPSTLAEDGVEEED-EAFPALPPASGHRNAPGELLTPLQPPSGVASAAGTVGLDYSSLADRLATEAAAAAKAKAAAGSSGALGGTAVGDGFSRLSVLPSIGSGRGGEANPESTSGAILPISSDWRGLEGSSPGSMGTDGDVSRGISALPSQSPKLPSPPSRQAAAANSVTRCASAETAALRARLRDRWFRLEAARKAQRQREAAERALMTAEDCATLGSATSVLGWNGGDGNHSSAGEGMRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPPRTVSASGMAAIRRSEVALVSASTA-TLPTGTNTPSPLNRNECSRGISAIASIPAADAELNDAAGPASCRPETTKVDSELSEEDGGRDSCGGGG-LPAVTGEHVYAACQAGMAGLLNDLLVRSGGRAADGKDKLRRTPLHLAAEAGSLECVNLLLKQGTRLPSCPRSRLARCCTQLDQXXXXXXXXXXXXXXXXNCGIVKALCAARMKVNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLMTMANSNQAWKSS----RDDSAPYSMVAMSDPASRARGNATGKRRALQSPMNPGSSNSVRANGGKGNGVPVSALSPLHEAAASGQPETLSLLLQLGVSLEERDAAAGVGGDTPLGRAVRAGQIDCARLLLDAGAMVGRENARXXXXXXXXXXXXXXXXXXXXXXXXAPLDGGKSNGRLTGADGRAPTGPREKMMARRRVEPLELALREGQLACAAALIEGGARINERTLRAVKLEPSGTGATEDKSVAQGRQVIYAGTSPGVSHRGGGWSGNGGAGSATTPATMLPLQADMVRRLSPEVPEISDSAPPNGGGLEVDPEYDSDTLDGVSVDIREIWREKDLARGEPSAGGSKETAAEEEAATRPGRPVEYVGGLRPALGECDIELVLEDGSRLPAHSCLLAAFSGTFCDLFLRRHGRCSRRTCPATRGGSSSKRQPVPGAPEVAAETADGREMDQRTRSRDVRHLLAGHDPPGQERGVASEHQRQTSPSISEAAVAAAAFAATATVENTAWWAPAVIDWGPGRGEVSVRFWGAGIMSAVVKHVYTGQPPSNMHADGLGRLLVASVSLRMNRLIRQVEHLLSARLSPQKGKPRSLQHDEAARLLRAARVLRATDLEKRCTLYMQANGVFPAVMKLRRELVVPSLNTSDVTRGLARLSNSGYLGSGPAHAWSSSGAVSTXXXXXXXXXXXXXXXXXXXXXXXXFDQLVPLLLDTVR----CTSTLSIGHQERAVLLTAALADACPQESPRSQNEAPDPLASPQRRRPIPPNLRGCCHAVRCDGDRWNADRPAVPLVSNVSAFSHGMGWLLRTGTVADIVLVLPEQPSHSDAMPPATVIDDGEEHEKNDSGNRGNLSPGGGVGVQSSERDAHSADSAVDSPARVSSGGLVKDEGSGRPTADSTKMGWTTKDQLENSRFLAHSMVLASRSEKFAAMLRFVQRQDGDSRTYADSDDGSXXXXXXXXXXXVPEDEHRNREESPWGDVEQGLAAGHNQGEAVDNSGQDGEVSQLPRSDSRRPSPPSDRICHRRRRPRRNPAPREMELHSPLLTPQSLGLFLEFLYTGVLDTSLSTRELSELALIADEYLVPDLTRQAEALLVECL-------------ASRNAGEYLFDSTTFNGTTTIQSKREEDTASAPLELLQLGVSLALPDLSAAAARAVLLQLERVSRSEAFEESSMSKRELVMAALEAM 6064
VVRATIKLALATQPNSNPFARLMRE+PRDTPVSSLNPQASVFVP AGT NP PSSG+NINHSSSSIPVG+RN+LPDGGAGRDHVH GEGL+G REAP+QT RNRQGRGA TKTHASG RSRSGHNGREA E GGSTEAIEAASRSE RR Q PS GSAAR SIPQ AH APQRTHLRG GQAPPGGRPRNRNNRRR HTRDQRLDPAHGHGMDNPPHPP K AARQNEAEASTPRGSTLRRP ARADAHTDMRRR GTGARGRPAGVDQ SSKEIGPIRSPVVARLGEAV EVPPVLPSTLAEDGV+EED EAFPALPPASG RN PGELL P+QPP V +AAG V LDYSSL DRLA EAAAAAKA AA SSGALGGTA GD FSRLSVLPS+GSGRGGEA P STS AILP+SSD R LEG SPGSMGTDGDVSRGISAL SQSPKLPSPPSRQA AANSVTRCASAETAALRARLRDRWFRLEAARKAQRQREAAERALMTAEDCATLGSA SVLGWNGGDGNHSSA EGMRS XXXXXXXXXXXXXXX TLP GTNT SPLN+NECSRGISAIASIPAA+AEL +AA ASCRPETT+V +ELS EDGGR SCGGGG LPAVTGEHVYAACQAGMAGLLNDLLVRSGGRAADGKDKLRRTPLHLAAEAGSLECV+LLLKQGTRL XXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLMTMANSNQAWKSS RD+SAPYSMV MS ASRARGNATGKRRALQSPMNPGSSNS RANGGKGNGVPV ALSPLHEAAASGQPETLSLLLQLGVSLEERDAAAGVGGDTPLGRAVRAGQIDCAR+LLDAGAMVGRENARXXXXXXXXXXXXXXXXXXXXXXXXAPLDGGKSNGRLTGADGRAPTGPREKMMARRRVEPLELALREGQLACAAALIEGGA INERTLRAVKL+PSGT TEDKSVAQGRQVIYAGTSPG S RGGGWSGNGGAGSA TPAT LPLQAD+++RLSPEVPEISDSAPP+GGGLEVDPEYD D LDGVSVDIRE WR+KDLAR EPSAGGSKETAAE EAATRPGRPVEYVGGLRP LGECDI+LVLEDGSRLPAHSCLLAAFSGTFCDLFLRRHGRCSRRTCPA RGG+ SKRQPVPGA EVAA ADGREMDQRTRSRDV HLLAGHDPPGQ R SEHQRQTSPSISEAAVAAAAFAATATVENTAWWAP VIDWGPGRGEVSVRFWGAG MSAVVKHVYTGQPPSNMHADGLGRLLVASVSLRMNRLIRQVEHLLS RL+PQKGK RSLQH EAARLLRAARVLRATDLEKRCTLYMQANGVFPAVMKLRRELVVPSLNT DVTRGLARLSNSGYLGSGPA+AWSSSGAVST FDQLVPLLLDTVR CTSTLSIG QERAVLLTAALADACPQESPRSQN+APDPLA+PQRRRPIPPNLRGCC AVRCDGDRWNADRPAVPLVSNVSAFSHGMGWLLRTGTVAD+VLVLPEQPSHSDAMPPATVI+DGEE EKN SGNR NLSPGG VGVQSSER AHSADSAVDSPARVS GG VKDEGSGRP DS KM TTKDQL NSRFLAHSMVLASRSEKF+AMLRFVQ QDG+SRTYADS DGS PE EHRNREE PWGDVEQG AAGHNQGEAVDN G+DGEVSQ PR DSRRPSPPSDR CH RRRPRRN APREMELHSP+LTPQSLGLFLEFLYTGVLDTSLSTRELSELALIADEYLVPDL RQAEALLVECL ASRNAG+Y FDSTTFNGTTT+QSKREEDT SAPLELLQLGVSLALPDLSAAAARAVLLQLERVSRSEAFE+SSMSKRELVMAALEAM
Sbjct: 38 VVRATIKLALATQPNSNPFARLMREKPRDTPVSSLNPQASVFVPPAGTVNPLPSSGNNINHSSSSIPVGQRNNLPDGGAGRDHVHDVHGEGLKGCREAPSQTRRRNRQGRGADTKTHASGGRSRSGHNGREAVEGGGSTEAIEAASRSEGRRTQTPS-GSAARYSIPQDAHRAPQRTHLRGPGQAPPGGRPRNRNNRRRAHTRDQRLDPAHGHGMDNPPHPPHPKPAARQNEAEASTPRGSTLRRPRARADAHTDMRRRGGTGARGRPAGVDQSASSKEIGPIRSPVVARLGEAVSEVPPVLPSTLAEDGVDEEDDEAFPALPPASGPRNTPGELLAPVQPPPVVTAAAGHVALDYSSLKDRLAIEAAAAAKA--AAESSGALGGTAEGDDFSRLSVLPSVGSGRGGEAKPGSTSSAILPVSSDLRVLEGCSPGSMGTDGDVSRGISALQSQSPKLPSPPSRQAVAANSVTRCASAETAALRARLRDRWFRLEAARKAQRQREAAERALMTAEDCATLGSAASVLGWNGGDGNHSSAEEGMRSGSGENHDEGEAKGRRASSSHTAMTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLPMGTNTSSPLNQNECSRGISAIASIPAAEAELIEAAETASCRPETTQVGAELSGEDGGRASCGGGGGLPAVTGEHVYAACQAGMAGLLNDLLVRSGGRAADGKDKLRRTPLHLAAEAGSLECVSLLLKQGTRLXX---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLMTMANSNQAWKSSAPSSRDNSAPYSMVVMSGQASRARGNATGKRRALQSPMNPGSSNSARANGGKGNGVPVPALSPLHEAAASGQPETLSLLLQLGVSLEERDAAAGVGGDTPLGRAVRAGQIDCARILLDAGAMVGRENARXXXXXXXXXXXXXXXXXXXXXXXXAPLDGGKSNGRLTGADGRAPTGPREKMMARRRVEPLELALREGQLACAAALIEGGAHINERTLRAVKLQPSGTEVTEDKSVAQGRQVIYAGTSPGESRRGGGWSGNGGAGSAGTPATTLPLQADILQRLSPEVPEISDSAPPDGGGLEVDPEYDCDMLDGVSVDIRETWRDKDLARREPSAGGSKETAAEGEAATRPGRPVEYVGGLRPTLGECDIDLVLEDGSRLPAHSCLLAAFSGTFCDLFLRRHGRCSRRTCPAARGGNYSKRQPVPGASEVAAAAADGREMDQRTRSRDVHHLLAGHDPPGQGRSATSEHQRQTSPSISEAAVAAAAFAATATVENTAWWAPPVIDWGPGRGEVSVRFWGAGTMSAVVKHVYTGQPPSNMHADGLGRLLVASVSLRMNRLIRQVEHLLSDRLAPQKGKARSLQHAEAARLLRAARVLRATDLEKRCTLYMQANGVFPAVMKLRRELVVPSLNTLDVTRGLARLSNSGYLGSGPAYAWSSSGAVSTSSASATVAAAKLAVDLSLRKRAVDFDQLVPLLLDTVRFITWCTSTLSIGRQERAVLLTAALADACPQESPRSQNDAPDPLAAPQRRRPIPPNLRGCCDAVRCDGDRWNADRPAVPLVSNVSAFSHGMGWLLRTGTVADVVLVLPEQPSHSDAMPPATVIEDGEEDEKNYSGNRENLSPGGRVGVQSSERGAHSADSAVDSPARVSPGGPVKDEGSGRPATDSRKMEGTTKDQLVNSRFLAHSMVLASRSEKFSAMLRFVQGQDGNSRTYADSVDGSSTDDDIFTDADTPEREHRNREEPPWGDVEQGEAAGHNQGEAVDNIGKDGEVSQPPRIDSRRPSPPSDRRCHCRRRPRRNTAPREMELHSPILTPQSLGLFLEFLYTGVLDTSLSTRELSELALIADEYLVPDLIRQAEALLVECLVRRGDVRYSLQVTASRNAGDYSFDSTTFNGTTTVQSKREEDTESAPLELLQLGVSLALPDLSAAAARAVLLQLERVSRSEAFEQSSMSKRELVMAALEAM 2067 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1045.329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1045.329.1 >prot_E-siliculosus-1a_F_contig1045.329.1 ID=prot_E-siliculosus-1a_F_contig1045.329.1|Name=mRNA_E-siliculosus-1a_F_contig1045.329.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=2000bp MREQPRDTPVSSLNPQASVFVPSAGTANPPPSSGSNINHSSSSIPVGRRNback to top mRNA from alignment at E-siliculosus-1a_F_contig1045:11093..21864+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1045.329.1 ID=mRNA_E-siliculosus-1a_F_contig1045.329.1|Name=mRNA_E-siliculosus-1a_F_contig1045.329.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10772bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1045:11093..21864+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1045:11093..21864+ >mRNA_E-siliculosus-1a_F_contig1045.329.1 ID=mRNA_E-siliculosus-1a_F_contig1045.329.1|Name=mRNA_E-siliculosus-1a_F_contig1045.329.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=12000bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1045:11093..21864+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |