mRNA_E-siliculosus-1a_F_contig1040.316.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE) HSP 1 Score: 116 bits (291), Expect = 6.320e-29 Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 3 Query: 6 LEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 LEGIDH+GE+CC LGCGQCGG GC TSGASNGLGAESCC EV DSGRYCDD NEAPCII Sbjct: 746 LEGIDHKGEVCCPLGCGQCGGSGCSTSGASNGLGAESCCSSEVKDSGRYCDDANEAPCII 805
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI) HSP 1 Score: 114 bits (286), Expect = 2.540e-28 Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 GLEGIDH+GE+CC L CGQCGG GC TSGASNGLGA+SCC E++DSGR+CDDTNEAPCII Sbjct: 546 GLEGIDHKGEVCCPLRCGQCGGSGCSTSGASNGLGADSCCSSEINDSGRHCDDTNEAPCII 606
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match: D7FN07_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN07_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 6.070e-23 Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 1 Query: 1 MASRASITEARSVVRLGVASAEVQDATLLALRTVLALSLAAHQRCTIAADTVTTLTRPRVSL 186 MASRAS TEARSVVR GVASAEVQDATLLALRTVLALSLAAHQRCTIAADTVTT TRPRVSL Sbjct: 430 MASRASTTEARSVVRSGVASAEVQDATLLALRTVLALSLAAHQRCTIAADTVTTPTRPRVSL 491
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 3.200e-21 Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 G EGID G +CC +GCGQCGG GC T+G++NGLG+ESCC V G YCDDTNEAPCII Sbjct: 576 GTEGIDGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCII 636
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 3.620e-21 Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 G+EGID G +CC LGCGQCGG GC TSGA+ GLGA+SCC + S YCD+TNEAPCII Sbjct: 350 GVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCII 410
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 2.080e-20 Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 G EGID G +CC +GCGQC G GC T+G++NGLG+ESCC V G YCDDTNEAPCII Sbjct: 507 GTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGLYCDDTNEAPCII 567
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 3.830e-20 Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 GLEGID G +CC L C QCGG GC TSG++ GLG+ESCC + SG YCDDTNEAPCII Sbjct: 548 GLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCII 608
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match: A0A6H5JZG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 5.780e-20 Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 GLEGID G +CCSL CGQCGG GC TSG++NGLG + CC + S YCD+TNEAPCII Sbjct: 244 GLEGIDGSGGVCCSLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCII 304
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match: D7FN04_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN04_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 1.970e-19 Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCI 182 G+EGID R +CC L CGQCGG GC TSGA+ GLGA+SCC V SG+YCDDT EAPCI Sbjct: 320 GIEGIDGR-VVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGEAPCI 378
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Match: D7FIC5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 2.350e-19 Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDTSGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 GLEGID G +CC L CGQCGG GC TSG++NGL +SCC + S YCD+TNEAPCII Sbjct: 451 GLEGIDGNGVVCCPLACGQCGGKGCYTSGSANGLSGDSCCGGGIKASDEYCDETNEAPCII 511 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1040.316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1040.316.1 >prot_E-siliculosus-1a_F_contig1040.316.1 ID=prot_E-siliculosus-1a_F_contig1040.316.1|Name=mRNA_E-siliculosus-1a_F_contig1040.316.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=63bp MASRASITEARSVVRLGVASAEVQDATLLALRTVLALSLAAHQRCTIAADback to top mRNA from alignment at E-siliculosus-1a_F_contig1040:36339..36527- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1040.316.1 ID=mRNA_E-siliculosus-1a_F_contig1040.316.1|Name=mRNA_E-siliculosus-1a_F_contig1040.316.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=189bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1040:36339..36527- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1040:36339..36527- >mRNA_E-siliculosus-1a_F_contig1040.316.1 ID=mRNA_E-siliculosus-1a_F_contig1040.316.1|Name=mRNA_E-siliculosus-1a_F_contig1040.316.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1040:36339..36527- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |