mRNA_E-siliculosus-1a_F_contig1040.315.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1040.315.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI) HSP 1 Score: 905 bits (2339), Expect = 0.000e+0 Identity = 513/627 (81.82%), Postives = 528/627 (84.21%), Query Frame = 3 Query: 156 MASMQGSPSAGSRTPS----------------------------VPSIGVERRFSLKDAEESNNLLTCIEEGDIEDLHRLLSDLPGGETSVLTTPSLLAKHKMRTPLMAAAATGDLATFSATLQAFNQQYSNKLARDSEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYNMEALAALELHDHKRMTLLMHAASNGPAPIFQEAQQAMRKAFGGDDDEFCHHLMRQSADGRTILMHAAASGDSMVLIMVSEVCQRFIRPQALREMMVERDSDGLNLLMHAASCCAPASALVPAETPPVDPDSSHKKDGGPAESS-SKGTASKTALAGGGGTSPADASSGAVAGDAAKEKKTAVEKMVEADTKEEKGVNKRDAVVVPVFKVAVRLVTKCLWTDEVLQQLKAVDLWGRSVLTHALLSGHELMFEAAYGAIRDVLQDELVSEMMETNEGEREDTPMIDALARGNTDMRKLYALRAGQLKASACLSSLPCCTMDAKIEGFIPGKLVVMFQLLLPQIAEGRQLILLYIMCALAPLMKLATIGSVDDSDSKHTGIKARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRKASAIEHRPIWCKE 1949
MASMQGSPSAGSRTPS VP +G+ERRFSLKDAEES+NLLTCIE+GDIEDLHRLLSDLPGGETSVLTTPSLLAKHKMRTPLMAAAATGDLAT +ATLQA NQQYSNKLAR+SEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYN EALA LELHDHK MTLLMHAASNGPAPIFQEAQQAMRKAFGGD+D LREMMVERDSDGLNLLMHAASCCAPASALVPAETPPVDPDSSHKKDGGPAESS SKGTASKTAL GGG TSPADASSGAVAGDAAK+KKTAVEK VEADTKEEKGVNKRDAVVVPVFKVAVRLVT+CLWTDEVLQQLKAVDLWGRSVLTHALLSGHE+MFEAAYGA+RDVLQDELVSEMMETNEGEREDTPMIDALARGNTDMRKLYALRAGQLK S TMDAKIEGFIPGKLVVMFQLLLPQIAEGRQLILLYIMCALAPL+KLAT GSVDDSDSKHTG+KARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRKASAI + C +
Sbjct: 1 MASMQGSPSAGSRTPSLATPSGTDCPYKKNPGGVPMGVMWWINQVPGLGIERRFSLKDAEESDNLLTCIEDGDIEDLHRLLSDLPGGETSVLTTPSLLAKHKMRTPLMAAAATGDLATCTATLQALNQQYSNKLARESEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYNTEALATLELHDHKHMTLLMHAASNGPAPIFQEAQQAMRKAFGGDED--------------------------------------------LREMMVERDSDGLNLLMHAASCCAPASALVPAETPPVDPDSSHKKDGGPAESSRSKGTASKTALTGGG-TSPADASSGAVAGDAAKDKKTAVEKTVEADTKEEKGVNKRDAVVVPVFKVAVRLVTRCLWTDEVLQQLKAVDLWGRSVLTHALLSGHEMMFEAAYGAVRDVLQDELVSEMMETNEGEREDTPMIDALARGNTDMRKLYALRAGQLKKDVDARS-KLSTMDAKIEGFIPGKLVVMFQLLLPQIAEGRQLILLYIMCALAPLVKLATTGSVDDSDSKHTGVKARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRKASAIGDKARLCSD 581
BLAST of mRNA_E-siliculosus-1a_F_contig1040.315.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE) HSP 1 Score: 234 bits (598), Expect = 2.730e-63 Identity = 199/606 (32.84%), Postives = 296/606 (48.84%), Query Frame = 3 Query: 201 SVPSIGVE----RRFSLKDAEESNNLLTCIEEGDIEDLHRLLSDLPGGETSVLTTPSLLAKHKMRTPLMAAAATGDLATFSATLQAFNQQYSNKLA---RDSEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYNMEALAALELHDHKRMTLLMHAASNGPAPIFQEAQQAMRKAFGGDDDEFCHHLMRQSADGRTILMHAAASGDSMVLIMVSEVCQRFIRPQALREMMVERDSDGLNLLMHAASCCAPASALVPAETPPVDPDSSHKKDGGPAESSSKGTASKTALAGGGGTSPADASSGAVAGDAAKEKKTAVEKMVEADTKEEKGVNKRDAVVVP---VFKVAVRLVTKCLWTDEVLQQLKAVDLWGRSVLTHALLSGHELMFEAAYGAIRDVLQDELVSEMMETNEGEREDTPMIDALARGNTDMRKLYALRAGQLKASACLSSLPCCTMDAKIEGFIPGKLVVMFQLLLPQIAEGRQLILLYIMCALAPLMKLATIGSVDDSDSKHTGIKARSNKLSVLLGAPAMFFWGVGTSTVGQT-ALGWSSSLSATSMAAATLAIPAVDSFFNSRKASAIEHRPIW-CKEWRFNWKAYWHW 1982
S+P + V R+ S +++E SN +L +E D L LS ++ + PS+ +H+MRTPLMAAAATG LA F+ L A N+ + R S + QL D GMT LMLAARS +V +L ++ + A + +F +++ + + +E L+ SAD RTILMHAA GD M ++ VS CQRFI P LR+++ + DS+G+ LMHA S + + A G +G + + V+ P V K A+ LV +EV +QLKA D WGR++ HA+L+ +F+A + A R+ + D+ ++ +M N+ ++ DT M AL M A R +LK + L T+++KI+ FIPGKL+V+FQLLLP++ +L LL IM A+AP + A G V + K + R + +S+ L APAMFFWG+GTSTVG T +GW+ S +A ++A AT+ IPA+D+FFNSRK + W C+ WRF+ +A+ W
Sbjct: 47 SLPDLSVSPTFGRQTSARESESSNRILGAVESRDHAKLREGLSGSVKPPSNAVLAPSMSFEHRMRTPLMAAAATGSLALFATVLHAVNRAIGEQRMETNRISLRKKQLEYMDESGMTLLMLAARSGNVGILEAVVERV--RIAPEXXXXXXXXXXXXXXXXXXXXXSAVFTVILNELQRCYKDNVEE---QLLASSADDRTILMHAARCGDQMGVLSVSHACQRFIMPSRLRKLVKQVDSEGVTFLMHAISATSFHTGAPTATXXXXXXXXXXXXXXXXXXXXXAGEXXXXXXX------------------XXXXXXXXXXXXXXXXXXXGEGAPRDEWVLDPGMAVLKSALALV------EEVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREHILDDEIAALMGINKEDKSDTVMETALQTVPRAMAARVARRDQELKRAITLEERAS-TIESKIQSFIPGKLIVIFQLLLPEVGSSDKLTLLIIMSAIAPGLSWAA-GLV--AREKPGSTEKRRSLVSLFLSAPAMFFWGLGTSTVGMTHGMGWNDSATAAALAVATIIIPAMDAFFNSRKVEQWYDK--WSCQRWRFSQRAHAKW 617
BLAST of mRNA_E-siliculosus-1a_F_contig1040.315.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI) HSP 1 Score: 177 bits (450), Expect = 5.500e-45 Identity = 150/467 (32.12%), Postives = 216/467 (46.25%), Query Frame = 3 Query: 207 PSIGVERRFSLKDAEESNNLLTCIEEGDIEDLHRLLSDLPGGETSVLTTPSLLAKHKMRTPLMAAAATGDLATFSATLQAFNQQYSNKLA---RDSEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYNMEALAALELHDHKRMTLLMHAASNGPAPIFQEAQQAMRKAFGGDDDEFCHHLMRQSADGRTILMHAAASGDSMVLIMVSEVCQRFIRPQALREMMVERDSDGLNLLMHAASCCAPASALVPAETPPVDPDSSHKKDGGPAESSSKGTASKTALAGGGGTSPADASSGAVAGDAAKEKKTAVEKMVEADTKEEKGVNKRDAVVVPVFKVAVRLVTKCLWT--DEVLQQLKAVDLWGRSVLTHALLSGHELMFEAAYGAIRDVLQDELVSEMMETNEGEREDTPMIDALARGNTDMRKLYALRAGQLKASACLSSLPCCTMDAKIEGFIPGKLVV 1592
P+ G R+ S ++AE SN++L +E GD L LS + + PS+ +H+MRTPLMAAAATG LA F+ L A N+ + R S R QL D GMT LMLAARS SV +L ++ + +EA L DH T+LMHAA + +F +++ + + +E L+ SAD RTILMHAA GD M + VS CQRFI P LR+++ + D +G+ LMHA S A + AG+ G + + V+ P V K W EV +QLKA D WGR++ HA+L+ +F+A + A R+ + D+ ++ +M N+ ++ DT M AL M A R +LK + L T+++KI+ FIPGKL+V
Sbjct: 12 PTFG--RQTSAREAESSNSILGAVESGDHAKLREGLSGSAKPPANAVLAPSMSFEHRMRTPLMAAAATGSLALFTTVLHAVNRAIGEQRMETNRISLRRKQLEYVDESGMTLLMLAARSGSVGILEAVVERVRIVEAPERLLDRDHSATTVLMHAAGARRSAVFTVILDELQRCYKDNVEE---QLLASSADDRTILMHAARCGDQMGALSVSHACQRFIMPSRLRKLIKQVDGEGVTFLMHAISATADHTGAPTTXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXAGE---------------------GAPRNEWVLDPGMAVL-----KSAWALVKEVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREYILDDEIAALMGINKEDKSDTIMETALQTVPRAMAARVARRDQELKRAITLEERAS-TIESKIQSFIPGKLIV 446
BLAST of mRNA_E-siliculosus-1a_F_contig1040.315.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.180e-26 Identity = 85/241 (35.27%), Postives = 126/241 (52.28%), Query Frame = 3 Query: 1209 PVFKVAVRLVTKCLWTDEVLQQLKAVDLWGRSVLTHALLSGHELMFEAAYGAIRDVLQDELVSEMMETN-EGEREDTPMIDAL-ARGNTDMRKLYALRAGQLKASACLSSLPCCTMDAKIEGFIPGKLVVMFQLLLPQIAEGRQ--LILLYIMCALAPLMKLATIGSVDDSDSKHTGIKARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRKASA 1919
PV + + LW E + L+A D W RS++ HA++SG +FE + A R + DE + +++ E T + A ++ T M +L + LK+ T+ AKI+ FIPG L+V+FQLLLP+ E L LL ++C +AP SV D + T +AR L PAMFFWGVGTS + + W+ S SA ++A AT+ IPA+D++F+ R A A
Sbjct: 254 PVIQAVLEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFETIFNAFRRDIHDEKIDLLLDPGVETSHAQTSLRRATNSQEGTPMAQLVQEKTTSLKSDVSKRKDDS-TVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGVAMSVK-RDPEITNTRARQTAAKYFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARA 492
BLAST of mRNA_E-siliculosus-1a_F_contig1040.315.1 vs. uniprot
Match: D7FWX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX2_ECTSI) HSP 1 Score: 122 bits (305), Expect = 1.220e-25 Identity = 85/241 (35.27%), Postives = 128/241 (53.11%), Query Frame = 3 Query: 1209 PVFKVAVRLVTKCLWTDEVLQQLKAVDLWGRSVLTHALLSGHELMFEAAYGAIRDVLQDELVSEMMETN-EGEREDTPMIDAL-ARGNTDMRKLYALRAGQLKASACLSSLPCCTMDAKIEGFIPGKLVVMFQLLLPQIAEGRQ--LILLYIMCALAPLMKLATIGSVDDSDSKHTGIKARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRKASA 1919
PV + A+ LW E + L+A D W RS++ HA++SG +FEA + A R + DE + +++ E T + A+ ++ T M +L + LK+ T+ AKI+ FIPG L+V+FQLLLP+ E L LL ++C +AP SV D + T +A +PAMFFWGVGTS + + W+ S SA ++A AT+ IPA+D++F+ R A A
Sbjct: 136 PVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVTKRKDDS-TVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMSVK-RDPETTNTRA----------SPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARA 364 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1040.315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1040.315.1 >prot_E-siliculosus-1a_F_contig1040.315.1 ID=prot_E-siliculosus-1a_F_contig1040.315.1|Name=mRNA_E-siliculosus-1a_F_contig1040.315.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=683bp MASMQGSPSAGSRTPSVPSIGVERRFSLKDAEESNNLLTCIEEGDIEDLHback to top mRNA from alignment at E-siliculosus-1a_F_contig1040:20077..32955+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1040.315.1 ID=mRNA_E-siliculosus-1a_F_contig1040.315.1|Name=mRNA_E-siliculosus-1a_F_contig1040.315.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=12879bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1040:20077..32955+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1040:20077..32955+ >mRNA_E-siliculosus-1a_F_contig1040.315.1 ID=mRNA_E-siliculosus-1a_F_contig1040.315.1|Name=mRNA_E-siliculosus-1a_F_contig1040.315.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4098bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1040:20077..32955+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |