mRNA_E-siliculosus-1a_F_contig104.310.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig104.310.1
Unique Name	mRNA_E-siliculosus-1a_F_contig104.310.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig104.310.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig104.310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig104	contig	E-siliculosus-1a_F_contig104:56648..56770 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	123
Model size	123
Exons	1
Ec32 ortholog	Ec-05_006100.1
Ec32 ortholog description	Hypothetical protein
Hectar predicted targeting category	no signal peptide or anchor

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927543.3001995-CDS-E-siliculosus-1a_F_contig104:56647..56770	1622927543.3001995-CDS-E-siliculosus-1a_F_contig104:56647..56770	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig104 56648..56770 +
1696318576.9630187-CDS-E-siliculosus-1a_F_contig104:56647..56770	1696318576.9630187-CDS-E-siliculosus-1a_F_contig104:56647..56770	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig104 56648..56770 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig104.310.1	prot_E-siliculosus-1a_F_contig104.310.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig104 56648..56770 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig104:56648..56770+
coding sequence from alignment at E-siliculosus-1a_F_contig104:56648..56770+

protein sequence of mRNA_E-siliculosus-1a_F_contig104.310.1

>prot_E-siliculosus-1a_F_contig104.310.1 ID=prot_E-siliculosus-1a_F_contig104.310.1|Name=mRNA_E-siliculosus-1a_F_contig104.310.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=41bp
MTIERGLRSWKSVQGCSVESEESATQPAALSETIVMTQVS*

mRNA from alignment at E-siliculosus-1a_F_contig104:56648..56770+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig104.310.1 ID=mRNA_E-siliculosus-1a_F_contig104.310.1|Name=mRNA_E-siliculosus-1a_F_contig104.310.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=123bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig104:56648..56770+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCATCGAGCGGGGACTGAGATCTTGGAAGAGCGTACAGGGCTGCTC
TGTGGAGTCGGAGGAGTCAGCGACGCAACCCGCGGCCTTGTCCGAGACCA
TCGTCATGACACAGGTAAGTTGA

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig104:56648..56770+

>mRNA_E-siliculosus-1a_F_contig104.310.1 ID=mRNA_E-siliculosus-1a_F_contig104.310.1|Name=mRNA_E-siliculosus-1a_F_contig104.310.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=246bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig104:56648..56770+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCATCGAGCGGGGACTGAGATCTTGGAAGAGCGTACAGGGCTGCTC
TGTGGAGTCGGAGGAGTCAGCGACGCAACCCGCGGCCTTGTCCGAGACCA
TCGTCATGACACAGGTAAGTTGAATGACCATCGAGCGGGGACTGAGATCT
TGGAAGAGCGTACAGGGCTGCTCTGTGGAGTCGGAGGAGTCAGCGACGCA
ACCCGCGGCCTTGTCCGAGACCATCGTCATGACACAGGTAAGTTGA