mRNA_E-siliculosus-1a_F_contig10393.305.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10393.305.1 vs. uniprot
Match: A0A6H5K608_9PHAE (Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K608_9PHAE) HSP 1 Score: 269 bits (687), Expect = 6.990e-81 Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 2 Query: 2 HRLDPVLMELDAKLSACTEEGDRRNIAAALAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQVSRADPSVDPLAASGLLKDWYLSDAEAGAGNGARPCWEEDKAVLAW 418 HRLDPVLMELDAKLSACTEEGDRRNIAAA+AERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQVSRADPSVDPLAASGLLKDWYLSDAE NGARPCWEEDKAVLAW Sbjct: 2083 HRLDPVLMELDAKLSACTEEGDRRNIAAAVAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQVSRADPSVDPLAASGLLKDWYLSDAEV---NGARPCWEEDKAVLAW 2218
BLAST of mRNA_E-siliculosus-1a_F_contig10393.305.1 vs. uniprot
Match: D7G0I9_ECTSI (Acetyl-CoA carboxylase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0I9_ECTSI) HSP 1 Score: 181 bits (458), Expect = 5.980e-55 Identity = 93/105 (88.57%), Postives = 96/105 (91.43%), Query Frame = 2 Query: 2 HRLDPVLMELDAKLSACTEEG-DRRNIAAALAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQVSRADPSVDPL 313 HRLDPVLMELDAKLSACTEEG DRRNI+AALAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQ ++ L Sbjct: 80 HRLDPVLMELDAKLSACTEEGGDRRNISAALAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQAGSIKGHMEQL 184
BLAST of mRNA_E-siliculosus-1a_F_contig10393.305.1 vs. uniprot
Match: A0A7S2V2G8_9STRA (Acetyl-CoA carboxylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G8_9STRA) HSP 1 Score: 143 bits (361), Expect = 5.460e-37 Identity = 76/149 (51.01%), Postives = 99/149 (66.44%), Query Frame = 2 Query: 2 HRLDPVLMELDAKLSACTE----------EGDRRNIAAALAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQVSRADPSVDPLAASGLLKDWYLSDAEAGAGNGARPCWEEDKAVLAW 418 HRLDPVL +LDAKL A E R I + ERE R+ GVY+Q+AVQFADLHDTPGRM+A G V K V W +RSFF+WRLRRRLAEFDL ++ +AD ++ + A+ ++K W++ GAGN A W+++KAVL+W Sbjct: 2144 HRLDPVLKKLDAKLKADAAVDASPEDRLTEDQRSTIQREIKEREGRLKGVYQQIAVQFADLHDTPGRMQATGVVLKEVQWAAARSFFYWRLRRRLAEFDLCNRIRKADSKIEQVQAAKMVKQWFV-----GAGNEASS-WDDNKAVLSW 2286
BLAST of mRNA_E-siliculosus-1a_F_contig10393.305.1 vs. uniprot
Match: A0A835YMY6_9STRA (Acetyl-CoA carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMY6_9STRA) HSP 1 Score: 141 bits (355), Expect = 3.510e-36 Identity = 77/145 (53.10%), Postives = 93/145 (64.14%), Query Frame = 2 Query: 2 HRLDPVLMELDAKLS--ACTEEGDRRNIAAALAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQVSRADPSVDPLA----ASGLLKDWYLSDAEAGAGNGARPCWEEDKAVLAW 418 HRLDP L ++D +L A R + A RE R++GVY+Q+AVQFADLHDTPGRM A GAVRKVVPW E+RSFF+WRLRRRLAEFDL RQ+ +A P A LLK W+ S + + WE+DK VLAW Sbjct: 2083 HRLDPALQQIDHQLQSDASLSTEARAALTADARTREQRLMGVYQQLAVQFADLHDTPGRMAATGAVRKVVPWAEARSFFYWRLRRRLAEFDLCRQLQQASKGKSPAEGIDQARALLKGWFASMVNSTG----QQQWEDDKTVLAW 2223
BLAST of mRNA_E-siliculosus-1a_F_contig10393.305.1 vs. uniprot
Match: A0A7S2VGJ5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VGJ5_9STRA) HSP 1 Score: 135 bits (341), Expect = 5.700e-36 Identity = 69/145 (47.59%), Postives = 92/145 (63.45%), Query Frame = 2 Query: 2 HRLDPVLMELDAKLSACTEEGDRRNIAAALAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQ------VSRADPSVDPLAASGLLKDWYLSDAEAGAGNGARPCWEEDKAVLAW 418 HRLDP L ELD KL T E ++ + ++ERE ++ VY Q++VQF +LHDTPGRM+A G + K V W +RSFF+WRLRR+LAEFDLRRQ V R S+ P+ AS ++ DW++ + W EDKAVL+W Sbjct: 150 HRLDPALQELDQKLKNETVEDVKQKLGQQISEREQELLPVYEQISVQFCELHDTPGRMKAVGVIEKEVEWETARSFFYWRLRRKLAEFDLRRQLVQAGEVGRGLKSLSPVDASKMIHDWFVETPGL-----SEELWSEDKAVLSW 289
BLAST of mRNA_E-siliculosus-1a_F_contig10393.305.1 vs. uniprot
Match: W7T6R6_9STRA (Acetyl-carboxylase alpha n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6R6_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.060e-35 Identity = 74/152 (48.68%), Postives = 96/152 (63.16%), Query Frame = 2 Query: 2 HRLDPVLMELDAKL----SACTEEGDR-RNIAAALAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQVSRA--------DPSVDPLAASGLLKDWYLSDAEAGAGNGARPCWEEDKAVLAW 418 HRLDPVL +DAK+ +A EG+ + + +RE + G+Y QVAVQFADLHDTPGRMEA G +RKVVPW ++RSFF+WRLRRRLAEF LR++V +A + + L AS LLK W+++ WEED+ VL W Sbjct: 73 HRLDPVLRAMDAKMELLEAAGEVEGEEGKQLRRERKDREDALKGIYAQVAVQFADLHDTPGRMEAVGVIRKVVPWGQARSFFYWRLRRRLAEFHLRKEVLKAVDGKEGGKEGGMTLLQASALLKSWFVATPGKSTEG-----WEEDREVLGW 219
BLAST of mRNA_E-siliculosus-1a_F_contig10393.305.1 vs. uniprot
Match: A0A7S1H3I2_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3I2_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.390e-34 Identity = 66/145 (45.52%), Postives = 92/145 (63.45%), Query Frame = 2 Query: 2 HRLDPVLMELDAKLSACTEEGDRRNIAAALAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRR------QVSRADPSVDPLAASGLLKDWYLSDAEAGAGNGARPCWEEDKAVLAW 418 HRLD L+ LD +L TEEG + +I ++ RE ++ VY Q+AVQF +LHDTPGRM+A G V +VV W+ESR++F+WRLRR+LAEFDLR+ +V R + L AS L+K+W++ W +DK +LAW Sbjct: 20 HRLDHELITLDKRLGQETEEGAKTSIKNQISTRENALLPVYEQIAVQFCELHDTPGRMKAVGVVERVVEWSESRAYFYWRLRRKLAEFDLRKKIVEAAEVGRGVKAPTVLEASALIKEWFIETPGMTDDQ-----WSDDKVILAW 159
BLAST of mRNA_E-siliculosus-1a_F_contig10393.305.1 vs. uniprot
Match: A0A7S2F9N9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9N9_9STRA) HSP 1 Score: 132 bits (333), Expect = 2.520e-34 Identity = 74/149 (49.66%), Postives = 95/149 (63.76%), Query Frame = 2 Query: 2 HRLDPVLMELDAKLSACT----------EEGDRRNIAAALAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQVSRADPSVDPLAASGLLKDWYLSDAEAGAGNGARPCWEEDKAVLAW 418 HRLD VL ELDAKL+A +E R +IAA +AERET V+G+Y+Q+AVQFADLHD PGRM A G + + V W SRS+F+ RL+RRLAEF LR QV++ P++ S ++K W++ GN A W E K VLAW Sbjct: 218 HRLDAVLKELDAKLAADASPDATPADKLDEAQRADIAAQIAERETLVMGIYQQIAVQFADLHDGPGRMAATGVIVQEVAWETSRSYFYHRLKRRLAEFQLRNQVTKYCPALSDSEGSEVIKKWFIE-----TGNSAAQ-WGESKFVLAW 360
BLAST of mRNA_E-siliculosus-1a_F_contig10393.305.1 vs. uniprot
Match: A0A7S2VFK8_9STRA (Acetyl-CoA carboxylase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VFK8_9STRA) HSP 1 Score: 135 bits (341), Expect = 2.700e-34 Identity = 69/145 (47.59%), Postives = 92/145 (63.45%), Query Frame = 2 Query: 2 HRLDPVLMELDAKLSACTEEGDRRNIAAALAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQ------VSRADPSVDPLAASGLLKDWYLSDAEAGAGNGARPCWEEDKAVLAW 418 HRLDP L ELD KL T E ++ + ++ERE ++ VY Q++VQF +LHDTPGRM+A G + K V W +RSFF+WRLRR+LAEFDLRRQ V R S+ P+ AS ++ DW++ + W EDKAVL+W Sbjct: 2158 HRLDPALQELDQKLKNETVEDVKQKLGQQISEREQELLPVYEQISVQFCELHDTPGRMKAVGVIEKEVEWETARSFFYWRLRRKLAEFDLRRQLVQAGEVGRGLKSLSPVDASKMIHDWFVETPGL-----SEELWSEDKAVLSW 2297
BLAST of mRNA_E-siliculosus-1a_F_contig10393.305.1 vs. uniprot
Match: A0A7S2A5F5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A5F5_9STRA) HSP 1 Score: 134 bits (338), Expect = 5.050e-34 Identity = 67/145 (46.21%), Postives = 89/145 (61.38%), Query Frame = 2 Query: 2 HRLDPVLMELDAKLSACTEEGDRRNIAAALAERETRVIGVYRQVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQVSRADP------SVDPLAASGLLKDWYLSDAEAGAGNGARPCWEEDKAVLAW 418 HRLD L LD KLS T + +++ I ++ ERE +I VY Q+AVQF +LHDTPGRMEA G + K + W E+RSFFFWRLRR+LAEFD R+++ A + + AS L+K W++ G W DKAVL+W Sbjct: 481 HRLDDTLKSLDKKLSESTSDDEKKTIKQSINEREQSLIPVYEQIAVQFCELHDTPGRMEAVGVIEKSIEWKEARSFFFWRLRRKLAEFDFRKKIQEASSVGSGFEGMTAIGASALMKTWFI-----GTPGMTEDMWNADKAVLSW 620 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10393.305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10393.305.1 >prot_E-siliculosus-1a_F_contig10393.305.1 ID=prot_E-siliculosus-1a_F_contig10393.305.1|Name=mRNA_E-siliculosus-1a_F_contig10393.305.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=140bp APSGPGADGVGREVVGVYRRGGQAEHRGRVGRARDQGHRGLSAGGGAIRRback to top mRNA from alignment at E-siliculosus-1a_F_contig10393:484..2080+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10393.305.1 ID=mRNA_E-siliculosus-1a_F_contig10393.305.1|Name=mRNA_E-siliculosus-1a_F_contig10393.305.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1597bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10393:484..2080+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10393:484..2080+ >mRNA_E-siliculosus-1a_F_contig10393.305.1 ID=mRNA_E-siliculosus-1a_F_contig10393.305.1|Name=mRNA_E-siliculosus-1a_F_contig10393.305.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10393:484..2080+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |