mRNA_E-siliculosus-1a_F_contig1039.304.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A6H5L227_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L227_9PHAE) HSP 1 Score: 522 bits (1345), Expect = 1.070e-178 Identity = 305/331 (92.15%), Postives = 310/331 (93.66%), Query Frame = 1 Query: 1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRDLADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLATHTFARQKLADYAAAXXXXXXXXXXXXXXXAVAKRPTRTNRMG 993 VRTRLQMAGSQGKTLGVRSCVA+TFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRR LADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQ+GRKPASSA XXXXXXXXXXXXX DGRLRGPLDCVRQVVRRNGVFGMWQA R VTLTRDSLGMGAFFLAF+TVKKALAERRYGSS ISSGELSG+RPPDFD LLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEV+PGGVATLSRL REGGLR LYMGWPVAFGRGIPGAAIMLATHTFA QKL DYAAAXXXXXXXXXXXXX AVAKRPTRTNRMG Sbjct: 37 VRTRLQMAGSQGKTLGVRSCVANTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRGLADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQHGRKPASSATAGXXXXXXXXXXXXXXXXDGRLRGPLDCVRQVVRRNGVFGMWQAMPGLR--VTLTRDSLGMGAFFLAFDTVKKALAERRYGSSIISSGELSGKRPPDFDLLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVVPGGVATLSRLVREGGLRNLYMGWPVAFGRGIPGAAIMLATHTFASQKLGDYAAAXXXXXXXXXXXXXA-AVAKRPTRTNRMG 364
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A4D9CYW2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYW2_9STRA) HSP 1 Score: 164 bits (414), Expect = 2.110e-42 Identity = 108/274 (39.42%), Postives = 141/274 (51.46%), Query Frame = 1 Query: 88 IRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRR----------DLAD---SPAGVYACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSI-SSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLAT 867 ++ FYKG++ PLAAQ V+KA+IF TN A++ L R +L+ S ++ CGAL GGVN+ +VTPVELVR RL++ G GP DCV Q R+ G G+W + TL RD G+GA+FLAF K L + + + G SG LL+AGS AG+ FW VALP D K+V+Q AG R G + RL REGGLR+L+ GW AFGR +PG+A LAT Sbjct: 1 MQGFYKGLSAPLAAQAVYKAIIFGTNSTAQQLLLARTKKRPRPPSSNLSPPCLSYPEIFLCGALSGGVNALVVTPVELVRNRLVVSQGA----------------------------YSGPRDCVGQAWRQGGFRGLWIGL-----LPTLCRDGPGVGAWFLAFAAGKDGLLAWKKSAKGLRGGGRESGEEKLGVGGLLLAGSGAGVAFWTVALPFDTVKSVMQVAGVGREGRREGMGQVIERLVREGGLRRLFRGWQGAFGRAVPGSAATLAT 241
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A225WEC9_9STRA (Mitochondrial Carrier (MC) protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WEC9_9STRA) HSP 1 Score: 160 bits (404), Expect = 9.860e-41 Identity = 106/294 (36.05%), Postives = 150/294 (51.02%), Query Frame = 1 Query: 1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRDLADSPAGV-----YACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLAT 867 +RTRLQ++ ++ + G C T + E +R YKG P +Q V+KAVIFTT+ R + L P GA+ GGVN+F+VTPVEL+R RL +QY P + R RG CV QVVR G+ MW+ T+ RDSLG+ +FL ++ K+ L+ ++G+L + LL AG+ G+ FW +ALP D K++IQA G++ + G V+T ++L RE G+ +LY GW AF RGIP AAI T Sbjct: 13 IRTRLQLSPTRFR--GFFHCAQQTIQQESMRGLYKGFLPPFFSQGVYKAVIFTTSSALRNDVLPNVLLLQPVLTPTIVSLTTGAVAGGVNAFLVTPVELIRNRLQVQYDNHPETR----------------------RYRGSFHCVTQVVRNEGIAAMWKGLT-----TTVIRDSLGVAFYFLGYDFAKQRLS---------ANGKLG-----ETATLLTAGAFGGVSFWTIALPFDTIKSLIQADGKE--DKYTGLVSTTTKLVREEGVMQLYRGWQAAFSRGIPSAAITFWT 261
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: G4ZGI7_PHYSP (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=G4ZGI7_PHYSP) HSP 1 Score: 159 bits (403), Expect = 2.780e-40 Identity = 112/295 (37.97%), Postives = 149/295 (50.51%), Query Frame = 1 Query: 1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRAL----DRRDLADSPAGV-YACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKAL-AERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLAT 867 +RTRLQ+ S + G C T + E +R YKG P +Q V+KAVIFTT+ R + L +P V GA+ GGVN+F+V PVELVR RL +QY +PAS R RG CV QVVR G+ MW+ T+ RDSLG+ +FL ++ K+ L A R G ++ LL AG+ G+ FW VALP D K++IQA GR G+ G V++ ++L RE G+ +L+ GW AF RGIP AAI T Sbjct: 40 IRTRLQL--SPARFCGFFHCAQQTVQQESMRGLYKGFLPPFFSQGVYKAVIFTTSSTLRNDVLPHVPLLQLVLTPTVVSLTAGAVAGGVNAFLVAPVELVRNRLQVQYDNQPASR----------------------RYRGAYHCVTQVVRNEGIAAMWKGLT-----TTVIRDSLGVAFYFLGYDFAKQRLTASGRLGETAT---------------LLTAGAFGGVSFWAVALPFDTIKSLIQADGRD-GKYT-GLVSSTAKLVREEGVMQLFRGWQAAFSRGIPSAAITFWT 288
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A024U8N0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8N0_9STRA) HSP 1 Score: 159 bits (402), Expect = 3.270e-40 Identity = 99/287 (34.49%), Postives = 150/287 (52.26%), Query Frame = 1 Query: 1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRDLADSPAGVYAC-GALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQA-SCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAI 855 +RTRLQ + S + + V +T R+EG+R YKG P +Q V+K+VIF+ G AR + SP + C GA+ GG+N+F+V PVELVR RL +Q ++ ++A + +G +D +RQV + G +W+ SC T+TRD+LG+ +F+ F+ +K L + +S + LVAG++ G+ FW +ALP D KTVIQ + + G G + T L R+ G+ +++ GW AF RGIPGAAI Sbjct: 36 IRTRLQHSSSSSFS----TVVGTTLRHEGLRGLYKGFFPPFFSQAVYKSVIFSVQGRARSFMSTHMDRPSPLFLSTCAGAIAGGINAFLVAPVELVRNRLQIQ--QQDTANA---------------------KYKGSIDVIRQVTKHEGPMALWKGLSC------TITRDALGVAFYFVTFDCIKTVLPDDWAPASRV----------------LVAGASGGIAFWTIALPFDTVKTVIQVSAHEAGTQPHGMIRTGLHLVRQHGVGRVFQGWQAAFSRGIPGAAI 273
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: W2PPC7_PHYPN (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PPC7_PHYPN) HSP 1 Score: 159 bits (401), Expect = 4.990e-40 Identity = 111/295 (37.63%), Postives = 153/295 (51.86%), Query Frame = 1 Query: 1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARR------ALDRRDLADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLAT 867 +RTRLQ++ S+ + G C T + E +R YKG P +Q V+KA+IFTT+ R +L + L + + A GA+ GGVN+F+V PVELVR RL +QY +P + + RG CV QVVR G+ MW+ T+ RDSLG+ +FL ++ KK LAE SG+L + LL AG+ G+ FW VALP D K++IQA G K G+ G ++ +RL RE G+ +L+ GW AF RGIP AAI T Sbjct: 38 IRTRLQLSPSRFR--GFFHCAQQTIQQETMRGLYKGFLPPFFSQGVYKAIIFTTSSTLRNDVLPHISLLQPVLTPTVVSLTA-GAIAGGVNAFLVAPVELVRNRLQVQYDSQPETR----------------------KYRGAYHCVTQVVRTEGITAMWKGLT-----TTVIRDSLGVAFYFLGYDFAKKRLAE---------SGKLG-----EMATLLTAGAFGGVSFWAVALPFDTIKSLIQADG-KTGKYT-GLASSTARLVREEGVMQLFRGWQAAFSRGIPSAAITFWT 286
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A6G0WZ38_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZ38_9STRA) HSP 1 Score: 158 bits (400), Expect = 5.870e-40 Identity = 103/291 (35.40%), Postives = 147/291 (50.52%), Query Frame = 1 Query: 1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRDLADSPAGVYAC-GALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLATH 870 +RTRLQ A S T RS V+ T + EG+R YKG P +Q V+K+VIF+T R L ++ SP + GA+ GG+N+F+V PVELVR RL +Q PA S + LD +R VV G+ +W+ T+TRD+LG+ +F+ F+ V+ +L E +S + L+AG+ G+ FW +ALP D KTV+Q G K G + + T RL ++ GLR+++ GW AF RGIP AAI T+ Sbjct: 36 IRTRLQHASSSSSTT-FRSVVSKTLQEEGVRGLYKGFFPPFFSQAVYKSVIFSTQARVRAFLTENTVSPSPLFLSTTSGAIAGGLNAFVVAPVELVRNRLQVQ----PAHSKT---------------------YQTSLDVLRHVVHSEGIPALWKGLSS-----TITRDALGVALYFVGFDFVRSSLPEEMDPTSRV----------------LIAGAAGGISFWAIALPFDTIKTVVQVDGGKNGNSM---LKTGWRLVQDHGLRRIFQGWQAAFSRGIPSAAITFYTY 276
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A6U3AS15_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U3AS15_9EUKA) HSP 1 Score: 155 bits (393), Expect = 4.640e-39 Identity = 105/299 (35.12%), Postives = 148/299 (49.50%), Query Frame = 1 Query: 1 VRTRLQMAGSQG-KTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRDLADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQA-AGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAIMLATHTFARQKL 891 +RTR+Q A G + G C A T + EG++AFYKG+ FPL AQ V+K+VIFT+ + + D V CGA GG+NSF+VTPVEL+R LM+QY K R R ++ V+ + +RNG+ G+W+ T RDS+G+ ++F +FE + L G S + LL++G + G+ FW+ A PLD K+++Q A RG I + L L R G L KL+ G+ VA RGIPGAAI R+ L Sbjct: 31 IRTRVQTADVSGVQYRGAIDCAAKTLKYEGLQAFYKGITFPLLAQAVYKSVIFTSYHAMQSLFPQTDGPPPIPRVMLCGAAAGGINSFVVTPVELIRNNLMVQYDHKTEPR----------------------RWRNSMELVKDLTKRNGITGLWRGIGP-----TFLRDSIGVASWFGSFEVCLRYLCPH-IGLSGTPA-------------LLLSGVSGGIGFWVAAFPLDTIKSLVQVEASSHRGSAI----SVLLSLVRNGELHKLFRGFGVAVMRGIPGAAITFTVQRKTREAL 284
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: W4GSW4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GSW4_9STRA) HSP 1 Score: 155 bits (393), Expect = 5.870e-39 Identity = 104/292 (35.62%), Postives = 145/292 (49.66%), Query Frame = 1 Query: 1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARRALDRRDLADSPAGVYAC-GALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQA-SCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFD---HLLVAGSTAGLCFWLVALPLDMTKTVIQAA--GRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAI 855 +RTRLQ + S S V +T R+EG+R YKG P +Q V+K+VIF+ G R + SP + C GA+ GG+N+F+V PVELVR RL +Q + +G D VRQV+ G +W+ SC T+TRD+LG+ +F+AF+ VK AL P ++D +LVAG+T G+ FW +ALP D KTVIQ + E G + T +L R+ G+ +++ GW AF RGIPGAAI Sbjct: 37 IRTRLQYSSSSS----FASVVCTTLRHEGLRGLYKGFFPPFFSQAVYKSVIFSAQGHVRSFMSAHMDHPSPLLLSTCAGAIAGGINAFLVAPVELVRNRLQIQQQHA--------------------------KYKGTADVVRQVIMHEGPLALWKGLSC------TITRDALGVACYFMAFDCVKSAL-------------------PSEWDTTSRVLVAGATGGIAFWSIALPFDTIKTVIQVSTPSTSHQEQPLGMIRTGLQLVRQHGIGRVFHGWQAAFSRGIPGAAI 273
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Match: A0A662XR70_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XR70_9STRA) HSP 1 Score: 156 bits (394), Expect = 6.590e-39 Identity = 106/291 (36.43%), Postives = 151/291 (51.89%), Query Frame = 1 Query: 1 VRTRLQMAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGIARR------ALDRRDLADSPAGVYACGALGGGVNSFIVTPVELVRTRLMLQYGRKPASSAXXXXXXXXXXXXXXXXRGGDGRLRGPLDCVRQVVRRNGVFGMWQASCRERRMVTLTRDSLGMGAFFLAFETVKKALAERRYGSSSISSGELSGRRPPDFDHLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFREGGLRKLYMGWPVAFGRGIPGAAI 855 +RTRLQ++ ++ + G C T + E +R YKG P +Q V+KAVIFTT+ R +L + L S + GA+ GGVN+F+V PVELVR RL +QY AS R RG C+ QV+R GV +W+ T+ RDSLG+ +FL F+ ++ L +SG L + LL AG+ G+ FW VALP D K++IQA GR+ G+ G +++ +RL +EGG+ +L+ GW AF RG+P AAI Sbjct: 52 IRTRLQLSPTRFR--GFFHCATQTIQRESVRGLYKGFLPPFFSQGVYKAVIFTTSATLRNDVLPNISLLQPFLTPSIVSLTG-GAVAGGVNAFLVAPVELVRNRLQVQYDNHVASR----------------------RYRGAYHCLTQVIRTEGVLALWKGLT-----TTVIRDSLGVACYFLGFDFARQRLT---------TSGRLG-----ETATLLTAGAFGGISFWAVALPFDTVKSLIQADGRE-GKYT-GLISSTTRLVQEGGVAQLFRGWQAAFSRGVPSAAI 296 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1039.304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1039.304.1 >prot_E-siliculosus-1a_F_contig1039.304.1 ID=prot_E-siliculosus-1a_F_contig1039.304.1|Name=mRNA_E-siliculosus-1a_F_contig1039.304.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=326bp MAGSQGKTLGVRSCVASTFRNEGIRAFYKGMAFPLAAQVVFKAVIFTTNGback to top mRNA from alignment at E-siliculosus-1a_F_contig1039:31251..36175- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1039.304.1 ID=mRNA_E-siliculosus-1a_F_contig1039.304.1|Name=mRNA_E-siliculosus-1a_F_contig1039.304.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4925bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:31251..36175- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1039:31251..36175- >mRNA_E-siliculosus-1a_F_contig1039.304.1 ID=mRNA_E-siliculosus-1a_F_contig1039.304.1|Name=mRNA_E-siliculosus-1a_F_contig1039.304.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1956bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:31251..36175- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |