mRNA_E-siliculosus-1a_F_contig1039.301.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1039.301.1 vs. uniprot
Match: D7FT36_ECTSI (Aspartyl protease family A01A, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT36_ECTSI) HSP 1 Score: 664 bits (1712), Expect = 2.670e-240 Identity = 341/351 (97.15%), Postives = 345/351 (98.29%), Query Frame = 1 Query: 1 MGAVSDDNATGKRDGKVDVQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQVYISGGRPLFVLNDAQKEEVIAQADSHLKTAKGRGYRRQVTRGEVVDLLSTLPRDASGLVSFHDAQKLIMGYREKQIARFKVIFPEIAGGAARKQAGRASKSCAHGNIGGDGKTLDGDVGRGGGGDRSCALAETTVVGRAQAGNVLASTENMSIGCSGGGXGAKRRGGRAKFSADVAPAEMFVKDMGYTPAGIANHTSKLLSTRAYKVSNIADGNDPGLTQNVKLIRDDRQPEQGQGTWDPYACLRGYNIGGHVRSARSSTTAKRKA 1053 MGAVSDDNATGKRDGKV+VQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQVYISGGRPLFVLNDAQKEEVIAQADSHLKTAKGRGYRRQVTRGEVVDLLSTLPR ASGLVSFHDAQKLIMGYREKQIARFKVIFPEIAGGAA KQAGRASKSCAHGNIGG GKTLDGDVGRGGGGDRSCALAETTVVGRAQAG VLASTENMS GCSGGG GAKR+GGRAKFSA+VAPAEMFVKDMG+TPAGIANHTSKLLSTRAYKVSNIADGNDPGLTQNVKLIRDDRQPEQGQGTWDPYACLRGYNIGGHVRSARSSTTAKRKA Sbjct: 1 MGAVSDDNATGKRDGKVNVQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQVYISGGRPLFVLNDAQKEEVIAQADSHLKTAKGRGYRRQVTRGEVVDLLSTLPRYASGLVSFHDAQKLIMGYREKQIARFKVIFPEIAGGAASKQAGRASKSCAHGNIGGGGKTLDGDVGRGGGGDRSCALAETTVVGRAQAGKVLASTENMSTGCSGGG-GAKRKGGRAKFSAEVAPAEMFVKDMGHTPAGIANHTSKLLSTRAYKVSNIADGNDPGLTQNVKLIRDDRQPEQGQGTWDPYACLRGYNIGGHVRSARSSTTAKRKA 350
BLAST of mRNA_E-siliculosus-1a_F_contig1039.301.1 vs. uniprot
Match: A0A7S3Y154_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y154_HETAK) HSP 1 Score: 235 bits (600), Expect = 1.920e-71 Identity = 141/339 (41.59%), Postives = 196/339 (57.82%), Query Frame = 1 Query: 34 KRDGKVDVQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQVYISGGRPLFVLNDAQKEEVIAQADSHLKTAKGRGYRRQVTRGEVVDLLSTLPRDASGLVSFHDAQKLIMGYREKQIARFKVIFPEIAGGAARKQAGRASKSCAHGNIGGDGKTLDGDVGRGGGGDRSCALAETTVVGRAQAGNVLASTENMSIGCSGGGXGAKRRGGRAKFSADVAPAEMFVKDMGYTPAGIANHTSKLLSTRAYKVSNIADGNDPGLTQNVKLIRDDRQPEQGQGTWDPYACLRGYNIGGHVRSARSSTTAKRK 1050 K +V ++ L+ F+FP LQHPLSTGRL+AF LYGPLD NS+LRSG+ GQ +V +E+D MC +FERE ILQVY+ G +L++++ E VIAQAD K AKG+ QV+R E L + LPRDA G +SFHD Q+ I+ YRE++IA KVIFPE+ G + V + G+ + M G AK++G S VAP EMF K G+T +++ ++LLS A+++++I GN LTQNV+L+R+ R+P+ G+ WD +CLRG NIGGHV++A+S+TT KRK Sbjct: 37 KAQVQVSLESLMVFLFPPGLQHPLSTGRLFAFGLYGPLDENSQLRSGHKGQHIVQRFELDAMCQRFEREIILQVYL-GSDSFELLSESEVEAVIAQADRRTKVAKGKAGMPQVSREEAAALFADLPRDADGRLSFHDMQRKIVEYREQKIAELKVIFPELMGXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------XXDPQQAAVSDAGEPGSXXXXFKLMDAGRQ-APVSAKKKG----LSRRVAPPEMFQKGTGFTEMEMSSQVNQLLSKHAFRITDIEHGNASELTQNVQLLREIREPDDGR-KWDSNSCLRGSNIGGHVKTAKSATTVKRK 357
BLAST of mRNA_E-siliculosus-1a_F_contig1039.301.1 vs. uniprot
Match: A0A7S2B712_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B712_9STRA) HSP 1 Score: 221 bits (564), Expect = 7.830e-67 Identity = 136/337 (40.36%), Postives = 187/337 (55.49%), Query Frame = 1 Query: 55 VQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQVYISGGRPLFVLNDAQKEEVIAQADSHLKTAKGRGYRRQVTRGEVVDLLSTL-PRDASGLVSFHDAQKLIMGYREKQIARFKVIFPEIAGGAARKQAGRASKSCAHGNIGGDGKTLDGDVGRGGGGDRSCALAETTVVGRAQAGNVLASTENMSIGCSGGGXGAKRRGGRAKFSADVAPAEMFVKDMGYTPAGIANHTSKLLSTRAYKVSNIADGNDPGLTQNVKLIR----DDRQPEQGQGTWDPYACLRGYNIGGHVRSARSSTTAKRK 1050 ++ + F+FP++LQHP+STGRL+AF YGPLD+++ LRSG+ GQ VV WE+DTMC QFEREDILQ+Y+ G+ L + Q EE++AQADS LK AKG+ +QVT EV + S L P A+GL+ FHD Q+ I+ YR+ I K +FPE+ A R + ++ E T +G L +T N G G RR + A VAPA MF++D G +A+ T+KLL +A+ + NIADGN LT NV+L+R D +G+ TWD RG +G V++ +SSTT KRK Sbjct: 1 LEAVKRFVFPQNLQHPMSTGRLFAFGFYGPLDADARLRSGHKGQHVVGNWELDTMCRQFEREDILQIYMLPGQTHSNLTEDQAEEILAQADSRLKVAKGKAMMKQVTPEEVDMIFSDLEPDPATGLLQFHDCQQRIIEYRQYCIKLNKEVFPEVTSKAKRIGSLKSGP-------------------------------EFTPIGP------LGATYNEF----GPGRSTGRRTRGVRVGASVAPATMFLRDKGLNSMEVASSTNKLLCHKAFSLCNIADGNSSELTANVRLVRSEPKDSAYTPEGRSTWDRNHATRGQLMGAFVKAPKSSTTVKRK 296
BLAST of mRNA_E-siliculosus-1a_F_contig1039.301.1 vs. uniprot
Match: A0A7S4A522_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A522_9STRA) HSP 1 Score: 196 bits (499), Expect = 3.190e-56 Identity = 117/314 (37.26%), Postives = 166/314 (52.87%), Query Frame = 1 Query: 49 VDVQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQVYISGGRPLFVLNDAQKEEVIAQADSHLKTAKGRGYRRQVTRGEVVDLLSTLPRDASGLVSFHDAQKLIMGYREKQIARFKVIFPEIAGGAARKQAGRASKSCAHGNIGGDGKTLDGDVGRGGGGDRSCALAETTVVGRAQAGNVLASTENMSIGCSGGGXGAKRRGGRAKFSADVAPAEMFVKDMGYTPAGIANHTSKLLSTRAYKVSNIADGNDPGLTQNVKLIR-DDRQPEQGQGTWDPYACL 987 V + +L+ F+FP L HPLSTGRLYAF YGPLD +LRSG GQ V+ WE+D MC QFERED LQVY+S GR L L++ Q+ E+I+QAD+ +K+ +G+G Q+++ EV D+ + G + FH+ Q+ ++ +RE +I + +V++P +A R G GG ++ + T R+ R AK S VAP MF KD G + +A +++L TRAYK+ +I D N P LTQNV LIR DD+ E G+G W +CL Sbjct: 78 VSIDDLISFVFPADLYHPLSTGRLYAFGFYGPLDRQQQLRSGPKGQHVLGRWELDAMCHQFEREDCLQVYVSEGRALCTLSEEQQNELISQADARMKSKRGKGLMPQLSKDEVRDIFEGVETSPDGTMRFHEMQQRVLAFREDRIKKMRVMYPLVARKPLRV---------------------------GFGGSQTASRKSLTSTKRS-------------------------RRTTAKVSPAVAPPTMFQKDKGLRNSDVATRINRMLCTRAYKICDIGD-NTPELTQNVALIREDDKDRELGEGPW---SCL 335
BLAST of mRNA_E-siliculosus-1a_F_contig1039.301.1 vs. uniprot
Match: A0A835ZGK5_9STRA (Putative aspartyl protease family A01A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGK5_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.950e-51 Identity = 119/335 (35.52%), Postives = 164/335 (48.96%), Query Frame = 1 Query: 46 KVDVQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQVYISGGRPLFVLNDAQKEEVIAQADSHLKTAKGRGYRRQVTRGEVVDLLSTLPRDASGLVSFHDAQKLIMGYREKQIARFKVIFPEIAGGAARKQAGRASKSCAHGNIGGDGKTLDGDVGRGGGGDRSCALAETTVVGRAQAGNVLASTENMSIGCSGGGXGAKRRGGRAKFSADVAPAEMFVKDMGYTPAGIANHT--------------------SKLLSTRAYKVSNIADGNDPGLTQNVKLIRDD--RQPEQGQGTWDPYAC 984 +V + +LL+FIFP LQHPLS+GRL F YGP N +L SG G+ VV WE+D+MC +RED+LQVY+S RPL L AQ+EE+IAQ+ Q+TR +V+ L +PR SFHD QK+++ YR++++A K+++P +A + RA + + G A+ I RG + KFS DVAPA MF+KD G +A +KLLST+A+K+S+I DGN+P LT NV+LIR+D QP QG WD C Sbjct: 27 RVFLDDLLKFIFPVHLQHPLSSGRLIVFGYYGP-PVNGQLHSGQRGEHVVGDWELDSMCTTIDREDVLQVYVSDDRPLCELLAAQQEEIIAQSTVTFP---------QITREQVIALFEGVPRGTDNAFSFHDVQKVVVAYRDRRVADGKIMYPSLAAHSKSPPRKRAQST--------------------------------------EKGTATAAQRQSPI----------SRGHKFKFSPDVAPATMFLKDKGLGDMEMATQRPLHSIQTINEVLLLTCMVQINKLLSTKAFKISSIEDGNNPSLTGNVRLIREDTTHQP-QGGAQWDETCC 302
BLAST of mRNA_E-siliculosus-1a_F_contig1039.301.1 vs. uniprot
Match: A0A7S2RFT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFT5_9STRA) HSP 1 Score: 149 bits (377), Expect = 2.420e-40 Identity = 76/146 (52.05%), Postives = 98/146 (67.12%), Query Frame = 1 Query: 103 LSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQVYISGGRPLFVLNDAQKEEVIAQADSHLKTAKGRGYRRQVTRGEVVDLLSTLPRDASGLVSFHDAQKLIMGYREKQIARFKVIFPEIAGGAARKQA 540 +STGRL AF +GPLD + LRSGY GQ VVS WE+DTMC QFEREDILQVY+ G+ L + + E++AQAD+ +K AKG+ +QVT EV +L + L RD GL++FHD Q+ IM +RE I KVIFP + G + A Sbjct: 1 MSTGRLLAFGFHGPLDHAARLRSGYLGQHVVSRWELDTMCRQFEREDILQVYMQKGQSPSALAEEEALELLAQADTRMKVAKGKALMKQVTEEEVRELFADLHRDEDGLLTFHDMQQRIMQFRENAIKSNKVIFPHLTPGVGKPGA 146
BLAST of mRNA_E-siliculosus-1a_F_contig1039.301.1 vs. uniprot
Match: A0A3R7K4N4_9STRA (NDK domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K4N4_9STRA) HSP 1 Score: 146 bits (368), Expect = 2.680e-36 Identity = 105/318 (33.02%), Postives = 147/318 (46.23%), Query Frame = 1 Query: 25 ATGKRDGKVDVQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQVYISGGRPLFVLNDAQKEEVIAQADSHLKTAKGRGYRRQVTRGEVVDLLSTLPRDASGLVSFHDAQKLIMGYREKQIARFKVIFPEIAGGAARKQAGRASKSCAHGNIGGDGKTLDGDVGRGGGGDRSCALAETTVVGRAQAGNVLASTENMSIGCSGGGXGAKRRGGRAKFSADVAPAEMFVKDMGYTPAGIANHTSKLLSTRAYKVSNIADGNDPGLTQNVKLIRDDR-QPEQGQGTWDP 975 A+ + G +D+ +LL F+FPK LQHP S GRL+ F LYGPLDS+S LRSG G VV+ E+ TM + EREDIL VY + L+ ++EEV+ Q D LK Q T ++ L S L RDA G ++FHD Q+ +M R +++ K G R Q R L +T+ S+ + AP+ F+KD+G T A S+LLSTRA+++ + DGN P LTQNV+L+R D+ Q + W+P Sbjct: 203 ASPTKSGAMDLDQLLNFLFPKHLQHPNSAGRLFVFGLYGPLDSHSRLRSGERGLHVVTDRELTTMSTRIEREDILAVY-----SMCSLSQEEEEEVVRQVDRLLKCYP------QYTPRDIETLFSPLLRDADGNMNFHDMQRAVMKERLRRVVCMKERLHPALGVLVRNQFARTLTR-------------------------------------------LTATKGDSL-------------------VNGAPSSFFLKDVGATDVENAALVSRLLSTRAFQICQMEDGNSPELTQNVRLVRPDKAQQFVNRDPWNP 447
BLAST of mRNA_E-siliculosus-1a_F_contig1039.301.1 vs. uniprot
Match: A0A3R7GTJ3_9STRA (NDK domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GTJ3_9STRA) HSP 1 Score: 134 bits (337), Expect = 5.190e-31 Identity = 98/301 (32.56%), Postives = 136/301 (45.18%), Query Frame = 1 Query: 25 ATGKRDGKVDVQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQVYISGGRPLFVLNDAQKEEVIAQADSHLKTAKGRGYRRQVTRGEVVDLLSTLPRDASGLVSFHDAQKLIMGYREKQIARFKVIFPEIAGGAARKQAGRASKSCAHGNIGGDGKTLDGDVGRGGGGDRSCALAETTVVGRAQAGNVLASTENMSIGCSGGGXGAKRRGGRAKFSADVAPAEMFVKDMGYTPAGIANHTSKLLSTRAYKVSNIADGNDPGLTQNVKL 927 A+ + G +D+ +LL F+FPK LQHP S GRL+ F LYGPLDS+S LRSG G VV+ E+ TM + EREDIL VY + L+ ++EEV+ Q D LK Q T ++ L S L RDA G ++FHD Q+ +M R +++ K G R Q R L +T+ S+ + AP+ F+KD+G T A S+LLSTRA+++ + DGN P LTQN + Sbjct: 232 ASPTKSGAMDLDQLLNFLFPKHLQHPNSAGRLFVFGLYGPLDSHSRLRSGERGLHVVTDRELTTMSTRIEREDILAVY-----GMCSLSQEEEEEVVRQVDRLLKCYP------QYTPRDIETLFSPLLRDADGNMNFHDMQRAVMKERLRRVVCMKERLHPALGVLVRNQFSRTLTR-------------------------------------------LTATKGGSL-------------------VNGAPSSFFLKDVGATDVENAALVSRLLSTRAFQICQMEDGNSPELTQNPTM 459
BLAST of mRNA_E-siliculosus-1a_F_contig1039.301.1 vs. uniprot
Match: A0A7S1CK78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CK78_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.590e-30 Identity = 90/332 (27.11%), Postives = 161/332 (48.49%), Query Frame = 1 Query: 22 NATGKRDGKVDVQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQVYISGGRPLFVLNDAQKEEVIAQADSHLKTAKGRGYRRQVTRGEVVDLLSTLPRDASGLVSFHDAQKLIMGYREKQIARFKVIFPEIAGGAAR-KQAGRASKSCAHGNIGGDGKTLDGDVGRGGGGDRSCALAETTVVGRAQAGNVLASTENMSIGCSGGGXGAKRRGGRAKFSADVAPAEMFVKDMGYTPAGIANHTSKLLSTRAYKVSNIADGNDPGLTQNVKLIRDDRQPEQGQGTWDPYACLRGYNIGGHV 1014 N+ ++ V++ +L + +FP +QHP STGRL F +YGP + EL +G+ GQ ++ E+ TM + E+ED+L +++ L + ++ E++ A KG+ ++R +V +L L R+ G VSFHD Q +IMG R+ ++ + ++P++ GG ++ ++ GR + A +GKT++ R T+ +GR R + + PA ++ +G T +++L+ ++++ +I GNDP LTQNV+L+R P WD +AC+ G N G +V Sbjct: 190 NSIVRKSHWVNLDDLYDLVFPPGMQHPRSTGRLIMFGMYGPFNDRGELCAGWKGQHRITDRELKTMIDEIEKEDLLSIFVKEKG----LVEEKQMEILKDAK------KGKSPLPNLSREQVEELFRPLKRNKKGQVSFHDMQAIIMGARQARLKELRQMYPDVTGGPSKGRKGGRKGEGKAA-----EGKTMEVSAFR----PPPPKFGRTSKLGR-----------------------------RPELANRKTPA---IRKIGETEG--FKVVAQMLNRESHRICDIEQGNDPSLTQNVRLLR--HLPRAKDNGWDDFACVGGANRGSYV 466
BLAST of mRNA_E-siliculosus-1a_F_contig1039.301.1 vs. uniprot
Match: A0A6G0WC23_9STRA (NDK domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WC23_9STRA) HSP 1 Score: 128 bits (322), Expect = 8.610e-30 Identity = 70/149 (46.98%), Postives = 96/149 (64.43%), Query Frame = 1 Query: 49 VDVQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQVYISGGRPLFVLNDAQKEEVIAQADSHLKTAKGRGYRRQVTRGEVVDLLSTLPRDASGLVSFHDAQKLIMGYREKQIARFK 495 V + L++F+FP ++QH STGRL+ FALYGPLDS S LRSG G VV+ E+DTMCL EREDIL VY G L+ A++E+V+ QAD ++K + TR ++ L T+PR+A+GL+SFHD Q+ I R ++I K Sbjct: 224 VSLDALMQFLFPPNVQHANSTGRLFVFALYGPLDSKSRLRSGEKGLHVVTDGELDTMCLSMEREDILSVYGMIG-----LSRAEEEQVLGQADQNMKDVP------RYTRADIQQLFRTVPRNANGLMSFHDMQEKITKERLRRIVCMK 361 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1039.301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1039.301.1 >prot_E-siliculosus-1a_F_contig1039.301.1 ID=prot_E-siliculosus-1a_F_contig1039.301.1|Name=mRNA_E-siliculosus-1a_F_contig1039.301.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=352bp MGAVSDDNATGKRDGKVDVQELLEFIFPKSLQHPLSTGRLYAFALYGPLDback to top mRNA from alignment at E-siliculosus-1a_F_contig1039:14120..16361+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1039.301.1 ID=mRNA_E-siliculosus-1a_F_contig1039.301.1|Name=mRNA_E-siliculosus-1a_F_contig1039.301.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2242bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:14120..16361+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1039:14120..16361+ >mRNA_E-siliculosus-1a_F_contig1039.301.1 ID=mRNA_E-siliculosus-1a_F_contig1039.301.1|Name=mRNA_E-siliculosus-1a_F_contig1039.301.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2112bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:14120..16361+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |