mRNA_E-siliculosus-1a_F_contig1039.298.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: D7FT33_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT33_ECTSI) HSP 1 Score: 501 bits (1289), Expect = 2.310e-173 Identity = 285/299 (95.32%), Postives = 289/299 (96.66%), Query Frame = 1 Query: 1 MPNKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQSWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQVR 897 MPNKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAM G RHLKDLYMMGNPCQSWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRK AEKEAA+L SQEKHDGNNNSDNEHSRGGGV AD HPTAPAK+DGA D+PGHDARPSGTD+SC GKGE EELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQ R Sbjct: 1 MPNKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMEGNRHLKDLYMMGNPCQSWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKLAEKEAAKLESQEKHDGNNNSDNEHSRGGGVDADDHPTAPAKSDGATDQPGHDARPSGTDKSCDGKGEEEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQTR 299
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A835Z7F5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F5_9STRA) HSP 1 Score: 236 bits (601), Expect = 7.520e-72 Identity = 146/293 (49.83%), Postives = 174/293 (59.39%), Query Frame = 1 Query: 13 ITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQS-WAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELE 888 I+++L+RRRAEHNEGLIHTLEE+SLHQEE+E I+D LG NCR LKILYLQNNII KM+NLHH+KELEYLNLAL KLDLTVNF+D+D+L+ S+ + +LKDLYMMGNP Q+ W GF AY L QLERLDG+EITR+ RI AQQ+LPAL+ E AQ++ Q TA EE T HTPE RT IYRE+AEQKREK+ERQ+ENLPK+R+FE E Sbjct: 5 ISLELVRRRAEHNEGLIHTLEEISLHQEEIERINDVLGKNCRHLKILYLQNNIINKMENLHHLKELEYLNLALNNITIIEGLGSCEMLNKLDLTVNFIDLDKLQESIEHLASCPNLKDLYMMGNPAQANWEGFAAYVTGILSQLERLDGREITRSMRITAQQQLPALKAEYQ--AQKLEQ---------------------------------------TA------------------------------EETTPHTPEVRTQIYRELAEQKREKDERQRENLPKERDFEQE 226
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A7S3HTQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTQ6_9STRA) HSP 1 Score: 224 bits (571), Expect = 4.250e-66 Identity = 142/294 (48.30%), Postives = 185/294 (62.93%), Query Frame = 1 Query: 13 ITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQ-SWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQ 891 IT DL+R+RAEHNEG+I TLEE+SLHQEELESI++ LG CR+LKILYLQNNII KM+NL HMK+L YLNLAL KLDLTVNF+D+DEL++S+ + + +L DLYMMGNP + +W F+ Y IA+LPQL+ LDG EITR+ +I+A+Q+LPAL E+ LA VR KRA+ A + Q K AP+ A D +E+ G + +E+T +TPE R IY+E+A+QK+EKE+R N PK RN+E EQ Sbjct: 28 ITRDLLRKRAEHNEGMISTLEEISLHQEELESINEVLGMTCRKLKILYLQNNIISKMENLFHMKDLVYLNLALNNVTKIEGLHNCEFLGKLDLTVNFIDLDELKDSIDHLQSRTNLHDLYMMGNPSEHNWPNFKHYVIAKLPQLQNLDGTEITRSMQIQARQKLPALEIELEKLASAVRTEKRAK---AIITEQAK-----------------------PAPSVTTYANGVTIEDV----DEEAEGSNDQSQEMTDNTPETRVRIYQELAQQKKEKEDRANVNAPKKRNYEKEQ 291
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A7S4E455_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E455_9STRA) HSP 1 Score: 211 bits (538), Expect = 1.880e-61 Identity = 113/189 (59.79%), Postives = 143/189 (75.66%), Query Frame = 1 Query: 7 NKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQS-WAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKE 570 N++T+ LIR+RAEHNEG+I TLEEL+LHQEEL +I+ LG CR+LKILYLQNNII K+Q+LHH+K+LEYLN+AL KLDLTVNFVD+DELE+S+ + + HLKDLYMMGNPC++ W GF+ Y IARLPQL+ LDG+ ITR+ +I A+Q+LP L E+ LAQE R K A+KE Sbjct: 25 NRMTLKLIRKRAEHNEGIISTLEELTLHQEELVAIEPCLGTTCRKLKILYLQNNIISKIQHLHHLKDLEYLNMALNNVSKIEGLDKCEFLNKLDLTVNFVDVDELESSMDHLADREHLKDLYMMGNPCEANWPGFKNYVIARLPQLQFLDGEAITRSMQIIAKQQLPKLAVELRSLAQEKRDEK-AQKE 212
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A7S2CFI3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CFI3_9STRA) HSP 1 Score: 189 bits (481), Expect = 9.620e-57 Identity = 114/172 (66.28%), Postives = 135/172 (78.49%), Query Frame = 1 Query: 1 MPNKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQ-SW-AGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPAL 510 MP+ +T LIR+RAEHNEG+I +LEE+SLHQEELE I + LG CR+LKI+YLQNNII KM+NLHH+KELEYLNLAL XXXXXXXXXXXX KLDLTVNF+D D LE S+ +V ++HL++LYMMGNP Q W GF+ Y I RLPQLE LDG IT++ RI A Q P L Sbjct: 1 MPH-LTRALIRKRAEHNEGIISSLEEISLHQEELEGIREVLGTTCRKLKIVYLQNNIIPKMENLHHLKELEYLNLALNNIXXXXXXXXXXXXNKLDLTVNFIDFDHLEESIDQLVSRQHLRELYMMGNPSQMDWDPGFKDYVIHRLPQLESLDGTHITKSMRIVAAQAYPRL 171
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: F0YAK5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAK5_AURAN) HSP 1 Score: 186 bits (472), Expect = 2.760e-53 Identity = 145/288 (50.35%), Postives = 174/288 (60.42%), Query Frame = 1 Query: 13 ITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQ-SWAGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDR 873 IT +LIR+RAEHNEG+I TLEEL+LHQEEL +I LG CR+LKILYLQNNII KM+NLHHMK+LEYLNLA XXXXXXXXXXXXXXXX TVNFVD+D LE S+ + + HL+DLYMMGNP Q W GF+ Y +ARLPQL+ +DG+ ITR RI A+Q+LP L E+ LA K AEK+A AP D R DE+ +TPE RT +Y E+AEQK EK+ +Q PK+R Sbjct: 1 ITRELIRKRAEHNEGVISTLEELTLHQEELLAIAPCLGTICRKLKILYLQNNIISKMENLHHMKDLEYLNLAXXXXXXXXXXXXXXXXXXXXXTVNFVDVDALEESMDNLASRIHLRDLYMMGNPAQVDWPGFKNYVVARLPQLKFVDGEPITRGVRIVAEQQLPKLSVELRGLAAA----KAAEKKAK-------------------------------APV-----------DYRDLDVDEAA----------PYTPEVRTKMYEEVAEQKAEKDHKQNAMKPKER 232
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A662WUB0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUB0_9STRA) HSP 1 Score: 190 bits (482), Expect = 4.600e-53 Identity = 136/311 (43.73%), Postives = 177/311 (56.91%), Query Frame = 1 Query: 10 KITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQS-W-AGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRA-----------EKEAARLGSQEKHDGNN-----NSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELE 888 +IT++L+R+RAEHNEG+I TLEE+SLHQEELE I+ +G CR+L+ILYLQNNII KM++L HMKEL YLNLAL KLDLTVNFVD D LE+S+ + +HL++LYM+GNPCQS W GF Y IA LPQL+ LDGKEI R+DRIKA Q ++ + A++V RK E EA + S E D ++ D++HS+ K A + E +TP R +Y EMAEQK E+E R++EN P++RN E E Sbjct: 3 RITVELLRKRAEHNEGIISTLEEISLHQEELEKIE-VIGTLCRKLQILYLQNNIIEKMEDLTHMKELRYLNLALNNISKIEGLQCCEFLNKLDLTVNFVDFDTLEDSIDHLKPLQHLRELYMLGNPCQSDWETGFREYVIASLPQLQLLDGKEIQRSDRIKALQVFRVRQQYVRKEAKKVLDRKXXXXXXXXXXXXXEDEAIEIVSGEATDISSVEVVEEVDSQHSKN------------KKKSVMASK---------------------EKVPYTPHTRREMYMEMAEQKEEEEARRRENQPRERNTEAE 279
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A6A3GCM2_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GCM2_9STRA) HSP 1 Score: 183 bits (465), Expect = 7.990e-53 Identity = 127/290 (43.79%), Postives = 165/290 (56.90%), Query Frame = 1 Query: 34 RRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQS-W-AGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGE---GEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELE 888 +RAEHNEG+I TLEE+SLHQEELE I+ +G CR+L+ILYLQNNII KM++L HMKEL YLN+AL KLDLTVNFVD D LE S+ + RHL++LYM+GNPCQ+ W +GF + +A LPQLE LDGKEI R+DRIKA Q +K + A++VR +K E++ P + D + G +A ++ K E +TP R +Y EMAEQK E+E R++EN PK+RN E E Sbjct: 1 KRAEHNEGIISTLEEISLHQEELEKIE-VIGTLCRKLRILYLQNNIIDKMEDLTHMKELRYLNVALNNIRKIEGLQSCEFLNKLDLTVNFVDFDTLEESIDHLKPLRHLRELYMLGNPCQANWESGFREFVVASLPQLEILDGKEIHRSDRIKALQVFRDRQKFVRSEARKVRAKKELERKEEN-------------------------------PQEEDEVLEVVGGEATDISEEQVEKKKKSVMASTEKVPYTPHTRREMYLEMAEQKEEEEARRRENQPKERNTEAE 258
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: A0A3R7GRH2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GRH2_9STRA) HSP 1 Score: 186 bits (473), Expect = 3.350e-52 Identity = 150/306 (49.02%), Postives = 190/306 (62.09%), Query Frame = 1 Query: 10 KITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQS-W-AGFEAYTIARLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVRQRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTK-----------HTPEARTAIYREMAEQKREKEERQKENLPKDRNFELE 888 +IT++L+R+RAEHNEG+I TLEE+SLHQEELE I+ +G CR+L+ILYLQNNII K+++L HMKEL YLNLA XXXXXXXXXXXXXXXX DLTVNFVD D LE S+ + +HL++LYM+GNPCQS W GF Y IA L QLE LDGKEI R+DRIKA Q +K + R+ A+K A+ + + + NS A +DG + G +A TD S + E TK +TP R +Y EMAEQK E+E R++EN P++RN E E Sbjct: 3 RITVELLRKRAEHNEGIISTLEEISLHQEELERIE-VIGTLCRKLQILYLQNNIIEKIEDLAHMKELRYLNLAXXXXXXXXXXXXXXXXXXXDLTVNFVDFDTLEESIDHLKPLQHLRELYMLGNPCQSNWETGFREYVIASLAQLELLDGKEIQRSDRIKALQVFRERQKYV---------RREAKKILAKNALEREQEVTKNS-------------------ADDDGVIEVVGGEA----TDVSSKDTAKSTEKTKPSVMASTEKVPYTPHTRREMYLEMAEQKEEEEARRRENQPRERNTEAE 275
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Match: W7TJA0_9STRA (Leucine-rich repeat containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJA0_9STRA) HSP 1 Score: 183 bits (464), Expect = 2.640e-50 Identity = 129/321 (40.19%), Postives = 168/321 (52.34%), Query Frame = 1 Query: 10 KITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKILYLQNNIIGKMQNLHHMKELEYLNLALXXXXXXXXXXXXXXXXKLDLTVNFVDMDELENSVSAMVGKRHLKDLYMMGNPCQSWAGFE--------------------AYTIA-RLPQLERLDGKEITRTDRIKAQQRLPALRKEIPLLAQEVR-----QRKRAEKEAARLGSQEKHDGNNNSDNEHSRGGGVGADGHPTAPAKNDGAADRPGHDARPSGTDESCGGKGEGEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQV 894 +IT DL+R+RAEHNEG++ TLEEL+LHQEELE I+D LG CR +KILYLQNN++ +++NLHH+K LEYLN+AL KLDLTVNF+D D LE S++ + RHL+DLY +GNP Q+ FE Y IA RLPQL+ LDG+EITRT R+ A + P L + +LA R + K+A K+ S + P +NDG +G T H PE R AIY E+A QK+EK ERQ+ + PK R+ EQ Sbjct: 3 EITRDLLRKRAEHNEGILTTLEELALHQEELEGINDILGKTCREIKILYLQNNLLPRIENLHHLKCLEYLNVALNNISVVEGLGSCEFLRKLDLTVNFIDFDALEASITHLASLRHLRDLYFLGNPAQTRPWFEDEEVKCEAVVDKMLDKKQAFTYYIAHRLPQLQCLDGQEITRTTRLLAARVFPTLETRLRVLATRTRCEKEGKAKKAIKDTESCAS--------------------------SGPVENDGT---------------------DGSMPTSHDPETRRAIYLEIAAQKKEKLERQRADGPKKRDTAREQA 276 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1039.298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1039.298.1 >prot_E-siliculosus-1a_F_contig1039.298.1 ID=prot_E-siliculosus-1a_F_contig1039.298.1|Name=mRNA_E-siliculosus-1a_F_contig1039.298.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=299bp MPNKITIDLIRRRAEHNEGLIHTLEELSLHQEELESIDDTLGCNCRRLKIback to top mRNA from alignment at E-siliculosus-1a_F_contig1039:115..3176- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1039.298.1 ID=mRNA_E-siliculosus-1a_F_contig1039.298.1|Name=mRNA_E-siliculosus-1a_F_contig1039.298.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3062bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:115..3176- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1039:115..3176- >mRNA_E-siliculosus-1a_F_contig1039.298.1 ID=mRNA_E-siliculosus-1a_F_contig1039.298.1|Name=mRNA_E-siliculosus-1a_F_contig1039.298.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1794bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:115..3176- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |