mRNA_E-siliculosus-1a_F_contig10363.286.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10363.286.1 vs. uniprot
Match: A0A0D6E4V5_9GAMM (LuxR family transcriptional regulator n=3 Tax=Halomonas TaxID=2745 RepID=A0A0D6E4V5_9GAMM) HSP 1 Score: 409 bits (1051), Expect = 6.390e-144 Identity = 217/220 (98.64%), Postives = 217/220 (98.64%), Query Frame = 1 Query: 1 MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEADTMEATTDVVNRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLQLIAEAVGEILQGEVWLPEALANVLEETSEEESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKVVS 660 MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEAD MEATTDVVNRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLQLIAEAVGEILQGEVWLPEALANVLEETSEEESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIK HVTAILRKLGV SRTQAVIAAQKLEVEPPKVVS Sbjct: 1 MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEADXMEATTDVVNRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLQLIAEAVGEILQGEVWLPEALANVLEETSEEESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKXHVTAILRKLGVXSRTQAVIAAQKLEVEPPKVVS 220
BLAST of mRNA_E-siliculosus-1a_F_contig10363.286.1 vs. uniprot
Match: A0A0X8HBT8_9GAMM (Putative transcriptional regulatory protein NarL n=170 Tax=root TaxID=1 RepID=A0A0X8HBT8_9GAMM) HSP 1 Score: 378 bits (971), Expect = 9.970e-132 Identity = 199/220 (90.45%), Postives = 208/220 (94.55%), Query Frame = 1 Query: 1 MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEADTMEATTDVVNRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLQLIAEAVGEILQGEVWLPEALANVLEETSEEESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKVVS 660 MA A KFIVADDHPLFRAALTQALRQLAPQAEIVE+DTM AT +VV RHPDADLILLDLHMPGAHGFSGLIQLRGQ PDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSL LIAEAVGEIL GEVWLP+ LA+ + +++EEE+RFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKV S Sbjct: 1 MAFAQKFIVADDHPLFRAALTQALRQLAPQAEIVESDTMAATNEVVTRHPDADLILLDLHMPGAHGFSGLIQLRGQTPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLALIAEAVGEILDGEVWLPKELADAMGDSNEEETRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKVES 220
BLAST of mRNA_E-siliculosus-1a_F_contig10363.286.1 vs. uniprot
Match: A0A5B8SS05_9GAMM (Response regulator transcription factor n=1 Tax=Pistricoccus aurantiacus TaxID=1883414 RepID=A0A5B8SS05_9GAMM) HSP 1 Score: 370 bits (949), Expect = 2.240e-128 Identity = 193/220 (87.73%), Postives = 207/220 (94.09%), Query Frame = 1 Query: 1 MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEADTMEATTDVVNRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLQLIAEAVGEILQGEVWLPEALANVLEETSEEESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKVVS 660 MA+A KFIVADDHPLFRAALTQALRQLAP+AEI+EAD+M AT DVV RHPDADLILLDLHMPGAHGFSGLIQLRGQ PD+PVAVVSGSDEPYVVRRAIDYGASGFIPKSS+L+LIA+AVGEIL+GEVWLP +A L E +EEE++FA AIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLE+EPPKV S Sbjct: 1 MALAQKFIVADDHPLFRAALTQALRQLAPRAEILEADSMAATNDVVIRHPDADLILLDLHMPGAHGFSGLIQLRGQAPDVPVAVVSGSDEPYVVRRAIDYGASGFIPKSSTLELIAKAVGEILEGEVWLPPDMAQSLGEVNEEETKFAAAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEIEPPKVES 220
BLAST of mRNA_E-siliculosus-1a_F_contig10363.286.1 vs. uniprot
Match: A0A0P7DIJ3_9GAMM (LuxR family transcriptional regulator n=11 Tax=Bacteria TaxID=2 RepID=A0A0P7DIJ3_9GAMM) HSP 1 Score: 369 bits (948), Expect = 3.180e-128 Identity = 193/220 (87.73%), Postives = 207/220 (94.09%), Query Frame = 1 Query: 1 MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEADTMEATTDVVNRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLQLIAEAVGEILQGEVWLPEALANVLEETSEEESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKVVS 660 MA A KFIVADDHPLFRAALTQALRQ+A QAEIVEAD+MEAT +VV RHPDADLILLDLHMPGAHGFSGLIQLRGQ PDIPVAVVSGS+EPYVVRRAIDYGASGFIPKS+SL +IAEA+GEIL+GEVWLP +A + E+SE+ESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYEL+VSEATIKAHVTAILRKLGVHSRTQAVIAAQ+LEVEPPKV S Sbjct: 1 MAFAQKFIVADDHPLFRAALTQALRQVASQAEIVEADSMEATNEVVARHPDADLILLDLHMPGAHGFSGLIQLRGQTPDIPVAVVSGSEEPYVVRRAIDYGASGFIPKSASLDVIAEAIGEILEGEVWLPTDIAEAMGESSEDESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQRLEVEPPKVRS 220
BLAST of mRNA_E-siliculosus-1a_F_contig10363.286.1 vs. uniprot
Match: A0A1H2UP35_9GAMM (Two component transcriptional regulator, LuxR family n=2 Tax=Aidingimonas TaxID=1395977 RepID=A0A1H2UP35_9GAMM) HSP 1 Score: 367 bits (942), Expect = 2.710e-127 Identity = 191/218 (87.61%), Postives = 204/218 (93.58%), Query Frame = 1 Query: 1 MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEADTMEATTDVVNRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLQLIAEAVGEILQGEVWLPEALANVLEETSEEESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKV 654 MA A KFIVADDHPLFRAALTQALRQ+APQAEIVE+DTM+AT DVV RHPDADLILLDLHMPGAHGFSGLIQLRGQ PDIPVAV+SGSDEP+VVRRAIDYG+SGFIPKS+SL LIAEAVGEIL GEVWLP LA L + EEE+RFAEAIA+LTPQQFRVLNMLT+GLLNKQIA+EL+VSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKV Sbjct: 1 MAFAQKFIVADDHPLFRAALTQALRQVAPQAEIVESDTMDATIDVVLRHPDADLILLDLHMPGAHGFSGLIQLRGQSPDIPVAVISGSDEPHVVRRAIDYGSSGFIPKSASLSLIAEAVGEILDGEVWLPPELAETLGDVDEEEARFAEAIAALTPQQFRVLNMLTDGLLNKQIAFELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKV 218
BLAST of mRNA_E-siliculosus-1a_F_contig10363.286.1 vs. uniprot
Match: Q1QZ85_CHRSD (Two component transcriptional regulator, LuxR family n=9 Tax=Chromohalobacter TaxID=42054 RepID=Q1QZ85_CHRSD) HSP 1 Score: 365 bits (936), Expect = 2.140e-126 Identity = 188/220 (85.45%), Postives = 206/220 (93.64%), Query Frame = 1 Query: 1 MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEADTMEATTDVVNRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLQLIAEAVGEILQGEVWLPEALANVLEETSEEESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKVVS 660 MA A KFIVADDHPLFRAAL QALRQ+APQAEIVEADTMEATTD+V RHPDADLILLDLHMPGAHGFSGLIQLRGQ P++PV V+SGS+EP VVRRAIDYGASGFIPKSSSL +IAEA+ ++L+GEVWLPE + ++L E++EEE+RFAEAIASLTPQQFRVLNML EGLLNKQIAYEL+VSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKV S Sbjct: 1 MAFAQKFIVADDHPLFRAALNQALRQVAPQAEIVEADTMEATTDMVLRHPDADLILLDLHMPGAHGFSGLIQLRGQSPEVPVVVISGSEEPPVVRRAIDYGASGFIPKSSSLDVIAEAIRQVLEGEVWLPEEMVDILGESNEEEARFAEAIASLTPQQFRVLNMLNEGLLNKQIAYELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKVES 220
BLAST of mRNA_E-siliculosus-1a_F_contig10363.286.1 vs. uniprot
Match: A0A086D250_9GAMM (LuxR family transcriptional regulator n=13 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A086D250_9GAMM) HSP 1 Score: 362 bits (928), Expect = 3.680e-125 Identity = 187/218 (85.78%), Postives = 204/218 (93.58%), Query Frame = 1 Query: 1 MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEADTMEATTDVVNRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLQLIAEAVGEILQGEVWLPEALANVLEETSEEESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKV 654 MA A KFIVADDHPLFRAAL QALRQ++PQAEIVEADTMEATT+VV RHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPV VVSGS+E VVRRAIDYGASGFIPKS+SL IAEA+GE+L+GEVWLP +A+ + E +EE++RFAEAIASLTPQQFRVLNMLTEGLLNKQIAYEL+VSEATIKAHVTAILRKLGVHSRTQAVIAAQKLE++PPKV Sbjct: 1 MAFAQKFIVADDHPLFRAALNQALRQVSPQAEIVEADTMEATTEVVTRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVTVVSGSEELDVVRRAIDYGASGFIPKSASLDAIAEAIGEVLKGEVWLPAEMADAMGEGNEEDARFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEIDPPKV 218
BLAST of mRNA_E-siliculosus-1a_F_contig10363.286.1 vs. uniprot
Match: A0A1S1NUB5_9GAMM (DNA-binding response regulator n=2 Tax=Kushneria TaxID=504090 RepID=A0A1S1NUB5_9GAMM) HSP 1 Score: 353 bits (906), Expect = 8.260e-122 Identity = 182/218 (83.49%), Postives = 202/218 (92.66%), Query Frame = 1 Query: 1 MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEADTMEATTDVVNRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLQLIAEAVGEILQGEVWLPEALANVLEETSEEESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKV 654 MA A KFIVADDHPLFRAALTQ+LRQ+A AEIVEADTM+AT D V RHPD DLILLDL MPGAHGFSGLIQLRGQMPDIPVAV+SGS+E +VVRRAIDYGASGFIPKS+SL +I+EA+GEIL GEVWLP A+A+ L + +EEE++FAEAIASLTPQQFRVLNMLTEGLLNKQIAY+L+VSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEV+PPK+ Sbjct: 1 MAFAQKFIVADDHPLFRAALTQSLRQVAANAEIVEADTMDATLDAVTRHPDVDLILLDLRMPGAHGFSGLIQLRGQMPDIPVAVISGSEEVHVVRRAIDYGASGFIPKSASLTVISEAIGEILDGEVWLPPAVADALGDGNEEEAKFAEAIASLTPQQFRVLNMLTEGLLNKQIAYDLNVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVDPPKI 218
BLAST of mRNA_E-siliculosus-1a_F_contig10363.286.1 vs. uniprot
Match: UPI00046F9E5A (response regulator transcription factor n=1 Tax=Carnimonas nigrificans TaxID=64323 RepID=UPI00046F9E5A) HSP 1 Score: 345 bits (884), Expect = 1.790e-118 Identity = 177/218 (81.19%), Postives = 198/218 (90.83%), Query Frame = 1 Query: 1 MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEADTMEATTDVVNRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLQLIAEAVGEILQGEVWLPEALANVLEETSEEESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKV 654 MA+A KFIVADDHPLFRAALTQAL + + +IVEADTMEATT+ V +H DADLILLDLHMPGAHGFSGLIQLRGQ+PDIPV VVSGS+EP+VVRRAIDYGASGFIPKS+SL +I +A+ +L GEVWLPE +A+ L E +EEESRFAEAIASLTPQQFRVLNML EGLLNKQIAY+L+VSEATIKAHVTAILRKLGVHSRTQAVIAAQ+LE+EPPKV Sbjct: 1 MALAQKFIVADDHPLFRAALTQALANVVDKTDIVEADTMEATTEAVQQHSDADLILLDLHMPGAHGFSGLIQLRGQVPDIPVVVVSGSEEPHVVRRAIDYGASGFIPKSASLSVIGDAIRAVLDGEVWLPEHIADALGEANEEESRFAEAIASLTPQQFRVLNMLNEGLLNKQIAYDLNVSEATIKAHVTAILRKLGVHSRTQAVIAAQRLELEPPKV 218
BLAST of mRNA_E-siliculosus-1a_F_contig10363.286.1 vs. uniprot
Match: A0A2Z2H8Z7_9GAMM (DNA-binding response regulator n=7 Tax=Kushneria TaxID=504090 RepID=A0A2Z2H8Z7_9GAMM) HSP 1 Score: 340 bits (873), Expect = 8.470e-117 Identity = 177/218 (81.19%), Postives = 195/218 (89.45%), Query Frame = 1 Query: 1 MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEADTMEATTDVVNRHPDADLILLDLHMPGAHGFSGLIQLRGQMPDIPVAVVSGSDEPYVVRRAIDYGASGFIPKSSSLQLIAEAVGEILQGEVWLPEALANVLEETSEEESRFAEAIASLTPQQFRVLNMLTEGLLNKQIAYELSVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKV 654 MA A KFIVADDHPLFRAALTQ+LRQ+A AEIVEADTMEAT +VV RHPDADLILLDL MPGAHGFSGLIQLRGQMPDIPVAV+SGS+EP VVRR++DYGASGFIPKS+SL IA + IL GE+WLP +A+ L + EEE++FA AIASLTPQQFRVLNMLTEGLLNKQIAY+L+VSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEP +V Sbjct: 1 MAFAQKFIVADDHPLFRAALTQSLRQVAANAEIVEADTMEATIEVVTRHPDADLILLDLRMPGAHGFSGLIQLRGQMPDIPVAVISGSEEPQVVRRSLDYGASGFIPKSASLDTIAGGISAILDGEIWLPPEMADYLGDGDEEEAKFAAAIASLTPQQFRVLNMLTEGLLNKQIAYDLNVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPSRV 218 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10363.286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10363.286.1 >prot_E-siliculosus-1a_F_contig10363.286.1 ID=prot_E-siliculosus-1a_F_contig10363.286.1|Name=mRNA_E-siliculosus-1a_F_contig10363.286.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=221bp MAVAHKFIVADDHPLFRAALTQALRQLAPQAEIVEADTMEATTDVVNRHPback to top mRNA from alignment at E-siliculosus-1a_F_contig10363:18..680+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10363.286.1 ID=mRNA_E-siliculosus-1a_F_contig10363.286.1|Name=mRNA_E-siliculosus-1a_F_contig10363.286.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=663bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10363:18..680+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10363:18..680+ >mRNA_E-siliculosus-1a_F_contig10363.286.1 ID=mRNA_E-siliculosus-1a_F_contig10363.286.1|Name=mRNA_E-siliculosus-1a_F_contig10363.286.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1326bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10363:18..680+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |