mRNA_E-siliculosus-1a_F_contig1036.285.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1036.285.1 vs. uniprot
Match: D7FLC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC4_ECTSI) HSP 1 Score: 1406 bits (3640), Expect = 0.000e+0 Identity = 781/815 (95.83%), Postives = 786/815 (96.44%), Query Frame = 1 Query: 1 LMRAGSGPPLDAAQRAALGGGVVKGEMSRASGAGQEESLRKRPRESWSGLGDPAGPGLTVKTGGRGSGRAGGQSQGPASPAGGLSTPGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETEQSGFFGLVLGMFEKQTVTHNKMFLYRQMQAQPWPVRGDRGWNGGGGPAETTQMRSAWLFNDPCTGQWTIALDYQSQPSSPIYQYNLPPEYTRQGTPCMDPNTFNANSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRAEILSFFLVGIYEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDEQVAQGRVLEETSLVQGPVENGXXXXXXXXXXXXXXXXPSASSSSQNGVQHEAGLGPLGSLERVIAQVDMEESGDSGAGVSRQEHARPPVDGGYPNSRGGSTGSXXXXXXXXXXXXXXXXWTDMFQGMTVELAQEQAAQLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGQQGQRVEDGGMPXXXXXXXXGAPQFSQQHGGPGPSASSSYMCGPAGGRMSVQTGDTLSFFDDPPQGNQVQHQLPVGGGAGHGGAMNLEYVEFPNFHELLVFFGRTLTERYDTSREEQETIPSPMYMHNMDE 2445
+MRAGSGPPLDAAQRAALGGGVVKGE+SRA+GAGQEESLRKRPRESWSGLGDPAGPGLTVKTGGRGSGRAGGQSQGPASPAGGLSTPGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETEQSGFFGLVLGMFEKQTVTHNKMFLYRQMQAQPWPVRGDRGWNGGGGPAETTQMRSAWLFNDPCTGQWTIALDYQSQPSSPIYQYNLPPEYTRQGTPCMDP+TFN NSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRAEILSFFLVGIYEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDEQVAQGRVLEETSLVQGPVENGXXXXXXXXXXXXXXXX SQNG QHEAGLGPLGSLERVIAQVDMEESGDSGAGVSRQEHARPPV GGYPNSRGGSTGSXXXXXXXXXXXXX WTDMFQGMTVELAQEQAAQLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QGG+QGQRV DGGMP GAPQFSQQHGGPGPS SSSYMCGPA GRMSVQTGDTLSFFDDPPQGNQVQHQLPVGG AGHGGAMNLEYVEFPNFHELLVFFGRTLTERYDTSREEQETIPSPMYMHNMDE
Sbjct: 1 MMRAGSGPPLDAAQRAALGGGVVKGEISRAAGAGQEESLRKRPRESWSGLGDPAGPGLTVKTGGRGSGRAGGQSQGPASPAGGLSTPGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETEQSGFFGLVLGMFEKQTVTHNKMFLYRQMQAQPWPVRGDRGWNGGGGPAETTQMRSAWLFNDPCTGQWTIALDYQSQPSSPIYQYNLPPEYTRQGTPCMDPSTFNGNSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRAEILSFFLVGIYEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDEQVAQGRVLEETSLVQGPVENGXXXXXXXXXXXXXXXXXXXXXXSQNGAQHEAGLGPLGSLERVIAQVDMEESGDSGAGVSRQEHARPPVHGGYPNSRGGSTGSXXXXXXXXXXXXXG--WTDMFQGMTVELAQEQAAQLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH----QGGRQGQRVGDGGMPGGKGDRRGGAPQFSQQHGGPGPSTSSSYMCGPAVGRMSVQTGDTLSFFDDPPQGNQVQHQLPVGGAAGHGGAMNLEYVEFPNFHELLVFFGRTLTERYDTSREEQETIPSPMYMHNMDE 809
BLAST of mRNA_E-siliculosus-1a_F_contig1036.285.1 vs. uniprot
Match: A0A6H5J9Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z1_9PHAE) HSP 1 Score: 1069 bits (2765), Expect = 0.000e+0 Identity = 558/580 (96.21%), Postives = 559/580 (96.38%), Query Frame = 1 Query: 145 GLGDPAGPGLTVKTGGRGSGRAGGQSQGPASPAGGLSTPGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETEQSGFFGLVLGMFEKQTVTHNKMFLYRQMQAQPWPVRGDRGWNGGGGPAETTQMRSAWLFNDPCTGQWTIALDYQSQPSSPIYQYNLPPEYTRQGTPCMDPNTFNANSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRAEILSFFLVGIYEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDEQVAQGRVLEETSLVQGPVENGXXXXXXXXXXXXXXXXPSASSSSQNGVQHEAGLGPLGSLERVIAQVDMEESGDSGAGVSRQEHARPPVDGGYPNSRGGSTGSXXXXXXXXXXXXXXXX--WTDMFQGMTVEL 1878
GLGDPAGPGLTVKTGGRGSGRAGGQSQGPASPAGGLSTPGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETEQSGFFGLVLGMFEKQTVTHNKMFLYRQMQAQPWPVRGDRGWNGGGGPAET QMRSAWLFNDPCTGQWTIALDYQSQPSSPIYQYNLPPEY RQGTPCMDPNTFN NSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQR EILSFFLVGI EDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDEQVAQGRVLEETSLVQGPVENG XXXXXXXXXXXXX S SQNG QHE GLGPLGSLERVIAQVDMEESGDSGA VSRQEHARPPVDGGYPNSRGGS GSXXXXXXXXXXXXXX WTDMFQGMTVE+
Sbjct: 390 GLGDPAGPGLTVKTGGRGSGRAGGQSQGPASPAGGLSTPGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETEQSGFFGLVLGMFEKQTVTHNKMFLYRQMQAQPWPVRGDRGWNGGGGPAETMQMRSAWLFNDPCTGQWTIALDYQSQPSSPIYQYNLPPEYIRQGTPCMDPNTFNTNSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRGEILSFFLVGICEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDEQVAQGRVLEETSLVQGPVENGGGGXXXXXXXXXXXXXXXXXSGSQNGAQHEPGLGPLGSLERVIAQVDMEESGDSGACVSRQEHARPPVDGGYPNSRGGSAGSXXXXXXXXXXXXXXAGGGWTDMFQGMTVEV 969
BLAST of mRNA_E-siliculosus-1a_F_contig1036.285.1 vs. uniprot
Match: A0A6H5JDI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI1_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 2.730e-16 Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = -3 Query: 2155 MEIGELHVLKVHRAPVPRASPDRQLVLYLIALGRVVEETQRVPRLDGHPPPRRTAHVRGRSR 2340
MEIGELHVL+VHRAPVPRASPDRQLVLYLIALGRVVEE QRVP PRRT+ G +R
Sbjct: 1 MEIGELHVLQVHRAPVPRASPDRQLVLYLIALGRVVEEIQRVPL------PRRTSGCGGGNR 56 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1036.285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1036.285.1 >prot_E-siliculosus-1a_F_contig1036.285.1 ID=prot_E-siliculosus-1a_F_contig1036.285.1|Name=mRNA_E-siliculosus-1a_F_contig1036.285.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=815bp MRAGSGPPLDAAQRAALGGGVVKGEMSRASGAGQEESLRKRPRESWSGLGback to top mRNA from alignment at E-siliculosus-1a_F_contig1036:24242..36162+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1036.285.1 ID=mRNA_E-siliculosus-1a_F_contig1036.285.1|Name=mRNA_E-siliculosus-1a_F_contig1036.285.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11921bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1036:24242..36162+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1036:24242..36162+ >mRNA_E-siliculosus-1a_F_contig1036.285.1 ID=mRNA_E-siliculosus-1a_F_contig1036.285.1|Name=mRNA_E-siliculosus-1a_F_contig1036.285.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4890bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1036:24242..36162+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |