mRNA_E-siliculosus-1a_F_contig1035.278.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1035.278.1 vs. uniprot
Match: D8LQR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR7_ECTSI) HSP 1 Score: 1116 bits (2886), Expect = 0.000e+0 Identity = 750/873 (85.91%), Postives = 759/873 (86.94%), Query Frame = 1 Query: 1318 MPTQPNATLSKDSLEDGLVGGETRENSAATGWGSRRGEERRSRVPRTGAGXXXXXXXXXXXXXXXXXXXXXXSALRREALDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-NPARGVPNKLFVRRRSESFKESVSTGLAHAIAEMQAGLPSDDDMVGVQDVGRQGASKERRSGGNQQATLREGSWSAGADSGXXXXXXXXXXGGSLNAGAAGMPWPRTNPKQPPVGMLSEGSSVASSVEGFELPESFSMGLMAQEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSSRSKGVSGRGWDNQPPPETKSRRGRRSESRVTRGTRPEREAGGSGRQWQQGGGG---ANDGQGSQQRTAAADGRGGRQTGQPSPGEPLRVGGRELRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSGGRGEVGARAGVVGSGRFRLGRVGRGSGMAGGRASGRDWSGKELSRNDSTVSSEGDEMHYVNPMNLQRRSAPHINLYPKAGSGGXXXXXAHSEHRSHGLPNLLRKFTFLRRSWRGGKQQGQGTTERGKGGLNNGAMNYDQRMEFLADKAFRTSVSGRGSGDGGVSGLEELGLGATADFDGDELDMACRRLLDALWMSAKRGSDTLQLSVVDGRALLSGLLMGLAPPPPLEIDPATGKAXXXXXXXELSPPPLVDLGIPLPR-----------------------ALAALTAARAAGTAAKQFGSTPGLHQKAMRPILVGASGPFARAAREAGRGGSSREGSTRSSSSARRRETAALQRAMELAMGVESEKEVKARRMRERAREGATKAMKDKMPSGEVDKHKEWLTSPYRPAPSEARVQGRQLASRARVHRELRNASATVGLSLGT 3855
MPTQPNATLSKDSLEDGLVGG+TRENSAATGWGSRRGEE RSRVPRTGAG XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NPARGVPNKLFVRRRSESFKESVSTGLAHAIAEMQAGLPSDDDMVGVQDV RQGASKE+R+GGNQQAT EGSWSAGADSG GGSLNAGAAG PWPRTNP Q PVGMLSEGSSVASS EGFELPESFSMGL+A+EG XX XXXXXXXXXXXXXXXXXX KSSRSKGVSGRGWD+QPPPETKSRRGRRSESRVTRGTRPEREAGGSGRQWQQG ANDGQGSQQRTAA DGRGGRQTGQPSPG PLRVG RELRRG XXXXXXXXXXXXXXXXXXXX RGSGGRGEVGARAGVVGSGRFRLGRVGRGSGM GGRA GRDWSGKELSRNDSTVSSEGDEMHYVNPMNL+RRSAPHIN +PK GSGG H EHR HGLPNLLRKFTFLRRSWRGGKQQ QGTTERGKGGLNNG MNYDQRMEFLADKA RTSV GRGSGDG VSGLEELGLGATADFDGDELDMACRRLLDALWMSAKRGSDTLQLSVVDGRALLSGLLMGLAPPPPLEIDPATGKA XX ELSP PLVDLGIPLPR ALAALTAARAAGTAAKQFGSTPGLHQKAMRPILVGASGPFARAAREAGRGGSSREGSTRSSSSARRRE AALQRAMELAMGVESEKEVKARRMRERAREGAT AMKDKMPSGEVDKHKEWL SPYRPAPSEARVQGRQLASRARVHRELRNASA VGLSLG+
Sbjct: 1 MPTQPNATLSKDSLEDGLVGGQTRENSAATGWGSRRGEEWRSRVPRTGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPARGVPNKLFVRRRSESFKESVSTGLAHAIAEMQAGLPSDDDMVGVQDVCRQGASKEKRNGGNQQATPTEGSWSAGADSGGGGLLKSDEVGGSLNAGAAGRPWPRTNPNQLPVGMLSEGSSVASSAEGFELPESFSMGLIAKEGGGRGERRGPAGGXXASPIGXXXXXXXXXXXXXXXXXX-KSSRSKGVSGRGWDSQPPPETKSRRGRRSESRVTRGTRPEREAGGSGRQWQQGXXXXXXANDGQGSQQRTAA-DGRGGRQTGQPSPGAPLRVGARELRRGGSSXXXXXXXXXXXXXXXXXXXXTAA-RGSGGRGEVGARAGVVGSGRFRLGRVGRGSGMTGGRAGGRDWSGKELSRNDSTVSSEGDEMHYVNPMNLRRRSAPHINSHPKGGSGGGGSRSVHPEHRGHGLPNLLRKFTFLRRSWRGGKQQRQGTTERGKGGLNNGTMNYDQRMEFLADKALRTSVGGRGSGDGVVSGLEELGLGATADFDGDELDMACRRLLDALWMSAKRGSDTLQLSVVDGRALLSGLLMGLAPPPPLEIDPATGKAQEKEXXEELSPSPLVDLGIPLPRGVSTDFSYAVRLGVYARISNLPQALAALTAARAAGTAAKQFGSTPGLHQKAMRPILVGASGPFARAAREAGRGGSSREGSTRSSSSARRREKAALQRAMELAMGVESEKEVKARRMRERAREGATTAMKDKMPSGEVDKHKEWLASPYRPAPSEARVQGRQLASRARVHRELRNASAAVGLSLGS 870
BLAST of mRNA_E-siliculosus-1a_F_contig1035.278.1 vs. uniprot
Match: A0A6H5KPM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPM5_9PHAE) HSP 1 Score: 969 bits (2504), Expect = 0.000e+0 Identity = 764/1143 (66.84%), Postives = 779/1143 (68.15%), Query Frame = 1 Query: 1318 MPTQPNATLSKDSLEDGLVGGETRENSAATGWGSRRGEERRSRVPRTGAGXXXXXXXXXXXXXXXXXXXXXXSALRREALDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----NPARGVPNKLFVRRRSESFKESVSTGLAHAIAEMQAGLPSDDDMVGVQDVGRQGASKERRSGGNQQATLREGSWSAGADSGXXXXXXXXXXGGSLNAGAAGMPWPRTNPKQPPVGMLSEGSSVASSVEGFELPESFSMGLMAQEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSSRSKGVSGRGWDNQPPPETK----------------------------------------------------------------------------------SRRGRRSESRVTRGTRPEREAGGSGRQWQQGGGGANDGQGSQQRTAAA-------DGRGGRQTGQPSPGEPLRVGGRELRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSGGRGEVGARAGVVGSGRFRLGRVGRGSGMAGGRASGRDWSGKELSRNDSTVSSEGDEMHYVNPMNLQRRSAPHINLYPKAGSGGXXXXXAHSEHRSHGLPNLLRKFTFLRRSWRGGKQQGQGTTERGKGGLNNGAMNYDQRMEFLADKAFRTSVSGRGSGDGGVSGLEELGLGATADFDGDELDMACRRLLDALWMSAKRGSDTLQLSVVDGRALLSGLLMGLAPPPPLEIDPATGKAXXXXXXXELSPPPLVDLGIPLPRALAALTAARAAGTAAKQFGSTPGLHQKAMRPILVGASGPFARAAREAGRGGSSREGSTRSSSSARRRETAALQRAMELAMGVESEKEVKARRMRERAREG-ATKAMKDKMPSGEVDKHKEWLTSPYRPAPSEARVQGRQLASRARVHRELRNASATVGLSLGTSSXXXXXXXXXXXXXXXXXXXXXXXXXXSKSGWEHRRSSFPLSRARKDLHTAVSESSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGDVGXXXXXXXFGGSDVDPASGXXXXXXXXXXDECSSSFEDDXXXXXXXXXXXXXXXXXXXXVGDSSSVADSFCTAXXXXXXXXXXDSSYMGNGERRSAAGRG 4464
MPTQPNATLSKDSLEDGLVG ETRE S A GWGSRRGEE RS VPRT A SALRREALDP XXXXXXXXXXXXXXXXXXXXXXXXXXXXX NPARGVPNKLFVRRR ESFKESVSTGLAHAIAEMQ GLPSDDD+ GV+DVGRQGASKE+RSG XXXXXXXXXX GSLNAGAAG WPRTNPKQ P G+LSEGSSVASS EGFELPESFSMGLMA+EG XXXXXXXXXXXXX KSSRS GVSGRGWDN PPPETK SRRGRRSESRVTRGTRPEREAGGSGRQWQQG DGRGGR GQPSPG PLR+GGRELRRG RGSGGRGEVG RA GRDW GKELSRN+STVSSEGDEMHYVNPMNLQRRSAPHINLYPK GS G AHSEHR HGLP LLRKFTFLRRSWRGGKQQGQGTTER KGGLNNGAMN QRM LADKA RTSV G+GSGDGG+SG EELGLGATAD DG ELDMACRRLLDALWMSAKRGSDT QLSVVDGRALLSGLL+GLAPPPP EI+PATGKAXXXXXXX P PLVDLGIPLPRALAALTAARAAGTAAKQFGSTPGLHQKAMRP+LVGASGPFARAAREAGRGGSS EGSTRSSSS RRRETAALQRAMELAMGVESEKEVKARRMRERA EG AT AMKDKMPSGEVDKHKEWLTSPYRPAPSEARVQGRQLASRARVHRELRNASA VG SLGT XXXXXXXXXXXXXXX KSGWEHRRSSFPL +ARKDLHTAVS SSRXXXXXXXXXXXXXXXXX XXXXXX F DV XXXX F DP XXX DE SSSFED XXXXXXXXXXXX VG SSSVADS CTA XXX Y+GNG+RR AGRG
Sbjct: 1 MPTQPNATLSKDSLEDGLVGRETREKSPAAGWGSRRGEEPRSGVPRTDALGVAGGSAPPREDIDEGSPPQTLSALRREALDPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPARGVPNKLFVRRRPESFKESVSTGLAHAIAEMQTGLPSDDDVGGVKDVGRQGASKEKRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLNAGAAGRTWPRTNPKQLPFGVLSEGSSVASSAEGFELPESFSMGLMAKEGGGGGERRGPAVGGGASPIGSQAXXXXXXXXXXXXX---KSSRSIGVSGRGWDNHPPPETKVVTVTAGRQQQDKVAAGGREQVVLSLPSLGVGSKAAPNRRGPAAPAAAASDRCPSPASSVXXXXXXXXXXXXXXXXXXXXXXSRRGRRSESRVTRGTRPEREAGGSGRQWQQGXXXXXXXXXXXXXXXXXXXXXXXXDGRGGR--GQPSPGAPLRLGGRELRRGGSSGSSRRGRKKTGNEDRGAASTAA--RGSGGRGEVGLRAXXXXXXXXXXXXXXXXXXXXXXXXXGRDWRGKELSRNNSTVSSEGDEMHYVNPMNLQRRSAPHINLYPKGGSSGGGSGSAHSEHRGHGLPKLLRKFTFLRRSWRGGKQQGQGTTERSKGGLNNGAMN--QRMGSLADKALRTSVGGKGSGDGGISGPEELGLGATADLDGKELDMACRRLLDALWMSAKRGSDTFQLSVVDGRALLSGLLVGLAPPPPFEINPATGKAXXXXXXXXXXPSPLVDLGIPLPRALAALTAARAAGTAAKQFGSTPGLHQKAMRPVLVGASGPFARAAREAGRGGSSWEGSTRSSSSVRRRETAALQRAMELAMGVESEKEVKARRMRERATEGGATTAMKDKMPSGEVDKHKEWLTSPYRPAPSEARVQGRQLASRARVHRELRNASAAVGHSLGTGGGGGGKRGTSPXXXXXXXXXXXXXXX--KSGWEHRRSSFPLCQARKDLHTAVSASSRXXXXXXXXXXXXXXXXXSSVGXXXXXX--------------FDDVXXXXXSGRFSXXXXDPXXXXXXGYGGSDADEGSSSFEDSSSGEGDXXXXXXXXXXXXG-VGASSSVADSSCTADDDYGSLXXXXXXYVGNGDRRGVAGRG 1117 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1035.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1035.278.1 >prot_E-siliculosus-1a_F_contig1035.278.1 ID=prot_E-siliculosus-1a_F_contig1035.278.1|Name=mRNA_E-siliculosus-1a_F_contig1035.278.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1426bp MPHSLGLPGPNHGKAVALEGSRADRLAQAPPLVAAAAAAAAAAAASGGMGback to top mRNA from alignment at E-siliculosus-1a_F_contig1035:8649..24286+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1035.278.1 ID=mRNA_E-siliculosus-1a_F_contig1035.278.1|Name=mRNA_E-siliculosus-1a_F_contig1035.278.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=15638bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1035:8649..24286+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1035:8649..24286+ >mRNA_E-siliculosus-1a_F_contig1035.278.1 ID=mRNA_E-siliculosus-1a_F_contig1035.278.1|Name=mRNA_E-siliculosus-1a_F_contig1035.278.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=8556bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1035:8649..24286+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |