mRNA_E-siliculosus-1a_F_contig1034.276.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1034.276.1 vs. uniprot
Match: A0A6H5KVB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB6_9PHAE) HSP 1 Score: 859 bits (2219), Expect = 1.730e-303 Identity = 535/616 (86.85%), Postives = 550/616 (89.29%), Query Frame = 1 Query: 991 MQSSLGLPNAYCDVFDRIESRGAAWLVATGHLLLHAFDPPPRGDV---GSDSSSSSKLRNDGKGARGRCATSGEGRDGGRGDXXXXXXXXXXXQYRRLLDNCLEPSWYEKKSENKGATTTVVEALGGKAMPSLTAALTRLTNSSTSATSSLLSGTRSAKNNSIGQARSPAVTVPQEGSPDNNLQAQPRPPSTPPSQQTMTPLSLPSSAGTGHRRRSRSPSRRSHRQGGNRTGTRSPVANTRLPATTAVGPGGKTCAVCLRRSSPAAMCPKCGRRAAKALKDREGSRKARVILVPYGGHFGVGEADALQREGDSVKRWVRLLDDETGADFYHNVHYGSSVWKSGIELPKPAPVVKAARXXXXXXXXXXXXXXVVGSPKSAASVPRSTTPPAPGSPAARALPMARAATSPRAIGMAASGSIVHRTALVRKTMAAFSVASVAALRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-NKGTSSPRPIIKPAIKXXXXXXXXXXXXXXXQKNASASPTATAASPGRNRVVLRDAGDAEPEVVLDAHRRIYPPFRLVSWEDVEAAAVAAELAGMKGVSPRPGTGVSGRKSSSRGTPGDSAGRGRRPRLTTAVTKGGG 2826
M SSLGLPNAYCD+FDRIESRGAAWLVATGHLLLHA DPPPRGD GSDSSSS+ L NDGK A GR A SGEGRDGGRGD XXXXXXXXQYRRLLDNCLEPSW+EKKSE AT TV+EA+GGK MPSLTAALTRLTNSSTSATSS+ TRSAKN SIGQ SPAVTVPQEGSPDNNLQA+PRPPSTPPS QTMTPLSLPSSAGTG RRRSRSPSRRSHRQGGN TGTRSP ANTRLPATTAV PGGKTCAVCLRRSSPAAMC KCGRRAAKALKDR GSRKARVILVPYGGHFGVGEADALQREGDSVKRWVRLLDDETGADFYHNVHYGSSVWKSGIELPKPAPVVKAARXXXXXXXXXXXXX VVGSP SAASVPRSTTPPAPGSPAARALPMARAAT+PRA+GMAASGSIVHRTALVR+TM A S AS+AALRA XXXXXXXXXXXXXXXXXXXXXXXXXXXX NKGTSSPR II+ A++ QKNASASPTA AASPGRNRVV+RDAGDAEPEVVLDAHRRIYPPFRLVSWEDVEAAAVAAELAGMKGVSPRPGTGVSGRKS S GT GDSAGRGRRPRLTTAVTKGGG
Sbjct: 1 MWSSLGLPNAYCDIFDRIESRGAAWLVATGHLLLHALDPPPRGDAPAAGSDSSSSN-LCNDGKDAGGRRAMSGEGRDGGRGDDGQXXXXXXXXQYRRLLDNCLEPSWHEKKSEKTAATKTVIEAVGGKEMPSLTAALTRLTNSSTSATSSMPDSTRSAKNKSIGQVSSPAVTVPQEGSPDNNLQAKPRPPSTPPSPQTMTPLSLPSSAGTGRRRRSRSPSRRSHRQGGNSTGTRSPAANTRLPATTAVEPGGKTCAVCLRRSSPAAMCRKCGRRAAKALKDRAGSRKARVILVPYGGHFGVGEADALQREGDSVKRWVRLLDDETGADFYHNVHYGSSVWKSGIELPKPAPVVKAARXXXXXXXXXXXXXAVVGSPNSAASVPRSTTPPAPGSPAARALPMARAATNPRAMGMAASGSIVHRTALVRRTMMALSTASMAALRAAAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTSSPRTIIERAMEKAAAVSSPASSPSPPQKNASASPTAAAASPGRNRVVVRDAGDAEPEVVLDAHRRIYPPFRLVSWEDVEAAAVAAELAGMKGVSPRPGTGVSGRKSYSHGTSGDSAGRGRRPRLTTAVTKGGG 615
BLAST of mRNA_E-siliculosus-1a_F_contig1034.276.1 vs. uniprot
Match: D7FS65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS65_ECTSI) HSP 1 Score: 541 bits (1394), Expect = 2.650e-183 Identity = 299/318 (94.03%), Postives = 301/318 (94.65%), Query Frame = 1 Query: 1 MVGNGGSRRXXXXXXXXXXXXXXXXXXQ-EPEGPPQKFVLAGDDTGSGIEYNILDPESWQKLEHYCKKWGIKQAHLESIYSRFARTIIRTEHLDFTLKPQYHASLDFLADEFMTTAGEFAAQIFIQTWFLRRKRGLAPPQDRRCVDFTRLVIMCSDLARLGDYELLSNLWACVLHRFSGILPTGTVDLDTRVNVELVREVITVLHTTLDKKLDILIGMLLEESEEVEIQGGVASTRGLSSTXXXXXXXXT----RTGEEGQRKIIHKSNGEEAEGAPSQAQQRRYLTLRSILRFSFQHPPLMFPVVQFQRVLRCKIIG 939
MVGNGGSRR XXXXXXXXXXX EPEGPPQKFVLAGDDTGSGIEYNILDPESWQKLEHYCKKWGIKQAHLESIYSRFARTIIRTEHLDFTLKPQYHASLDFLADEFMTTAGEFAAQIFIQTWFLRRKRGLAPPQDRRCVDFTRLVIMCSDLARLGDYELL NLWACVLHRFSGILPTGTVDLDTRVNVELVREVITVLHT LDKKLD+LIGMLLEESEEVEIQG VASTRGLSSTXXXXXXXX RTGEEGQRKIIHKSNGEEAEGAPSQAQ+RRYLTLRSILRFSFQHPPLMFPVVQFQRVLRCKIIG
Sbjct: 1 MVGNGGSRRKEDARHSXXXXXXXXXXXXXEPEGPPQKFVLAGDDTGSGIEYNILDPESWQKLEHYCKKWGIKQAHLESIYSRFARTIIRTEHLDFTLKPQYHASLDFLADEFMTTAGEFAAQIFIQTWFLRRKRGLAPPQDRRCVDFTRLVIMCSDLARLGDYELLINLWACVLHRFSGILPTGTVDLDTRVNVELVREVITVLHTALDKKLDLLIGMLLEESEEVEIQGDVASTRGLSSTXXXXXXXXXXXXXRTGEEGQRKIIHKSNGEEAEGAPSQAQRRRYLTLRSILRFSFQHPPLMFPVVQFQRVLRCKIIG 318
BLAST of mRNA_E-siliculosus-1a_F_contig1034.276.1 vs. uniprot
Match: A0A836C822_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C822_9STRA) HSP 1 Score: 183 bits (464), Expect = 3.680e-45 Identity = 116/331 (35.05%), Postives = 161/331 (48.64%), Query Frame = 1 Query: 154 ILDPESWQKLEHYCKKWGIKQAHLESIYSRFARTIIRTEHLDFTLKPQYHASLDFLADEFMTTAGEFAAQIFIQTWFLRRKRGLAPPQDRRCVDFTRLVIMCSDLARLGDYELLSNLWACVLHRFS-GILPTGTVD--------LDTRVNVELVREVITVLHTTLDKKLDILIGMLLEESEEVEIQGGVASTRGLSSTXXXXXXXXTRTGEEGQRKIIHKSNGEEAEGAPSQAQQRRYLTLRSILRFSFQHPPLMFPVVQFQRVLRCKIIGSRYWLRRRRPAFERGVDMQSSLGLPNAYCDVFDRIESRGAAWLVATGHLLLHAFDPPPRG 1119
+LD + WQ L YC + G + +E+I++RFART+ EH DFT K +HASLDF+ DEF T GEF AQ+ +QTW+ + LAP DRR DF RLVI+ DLA + + ELL+ WA L + G G+ L + N EL RE + V+H + L+ +E+ GGV S +R +++ +F+HP L+FPVVQFQR LR +++G YW +RRRP G+ ++ LP A D+ DR+ S AAW+ TG LLL RG
Sbjct: 1 MLDDDQWQLLAEYCNERGFGKREVEAIHARFARTLNSEEHSDFTKKKIHHASLDFIQDEFYNTGGEFVAQLLLQTWYQQPHAMLAPQSDRRQFDFARLVILSCDLADMSNAELLTAFWASALQCYGCGTAGGGSGGGSSSWERALHLQANTELARETVEVIHRDARPRSVSLV------MDELLPPGGVVS-------------------------------------------------VRDLIQAAFEHPALLFPVVQFQRTLRRRLMGRAYWQQRRRPLAVPGLPC-TAAALPQAADDLLDRVRSYRAAWVATTGTLLLRVLRRGGRG 275 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1034.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1034.276.1 >prot_E-siliculosus-1a_F_contig1034.276.1 ID=prot_E-siliculosus-1a_F_contig1034.276.1|Name=mRNA_E-siliculosus-1a_F_contig1034.276.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=943bp MVGNGGSRRKEDARHSDSSDDDDDDENQEPEGPPQKFVLAGDDTGSGIEYback to top mRNA from alignment at E-siliculosus-1a_F_contig1034:32414..38035- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1034.276.1 ID=mRNA_E-siliculosus-1a_F_contig1034.276.1|Name=mRNA_E-siliculosus-1a_F_contig1034.276.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5622bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1034:32414..38035- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1034:32414..38035- >mRNA_E-siliculosus-1a_F_contig1034.276.1 ID=mRNA_E-siliculosus-1a_F_contig1034.276.1|Name=mRNA_E-siliculosus-1a_F_contig1034.276.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5658bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1034:32414..38035- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |