mRNA_E-siliculosus-1a_F_contig1034.275.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: D7FS66_ECTSI (Putative cyclin A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS66_ECTSI) HSP 1 Score: 585 bits (1508), Expect = 5.960e-209 Identity = 291/292 (99.66%), Postives = 291/292 (99.66%), Query Frame = 1 Query: 166 LPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVRQ 1041 LPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAA ELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVRQ Sbjct: 50 LPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVRQ 341
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: A0A6H5L2E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E4_9PHAE) HSP 1 Score: 573 bits (1478), Expect = 1.130e-200 Identity = 285/292 (97.60%), Postives = 288/292 (98.63%), Query Frame = 1 Query: 166 LPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVRQ 1041 LPPGVKDIDAGVSE+GESHLLNPDYAK+HALYLREQEKRNRPVAYIG KQ+DMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLT ITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAA ELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFG EGDVRQ Sbjct: 290 LPPGVKDIDAGVSEQGESHLLNPDYAKQHALYLREQEKRNRPVAYIGTKQRDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTSITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEGDVRQ 581
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: A0A835YJW4_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJW4_9STRA) HSP 1 Score: 234 bits (597), Expect = 2.760e-69 Identity = 128/266 (48.12%), Postives = 169/266 (63.53%), Query Frame = 1 Query: 226 LNPDYAKEHALYLREQEK--RNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHF 1017 N Y ++ +LR QE + RP AY+ Q+D+R MRS L+DW+ EVC +F+L T F ++L+DRSLSAF V R LQLLGCAC+++A+K+EE + P+ L +ISD+ YT ++++ ME V+ L F ++C+TP +F F AA NAR+ L YLLEL L DY VSLLPS KAAAA LAR T+ G AW+ +TGY+A LEPCVRR+ LH AE + LHA+RD+Y K HRVA V C E L F Sbjct: 212 FNRCYGAQYQHWLRTQEANLKFRPTAYLTQVQRDLRAVMRSTLIDWLVEVCTEFRLQPGTPFLVIELLDRSLSAFCVNRDNLQLLGCACLLVAAKFEEEHPPSVNSLVYISDSAYTISDMVRMEGQVLQHLNFAVSCVTPHHFAAEFSAAAGCNARQGYLCLYLLELALLDYSLVSLLPSHKAAAAALLARMTMRRGG---GAWSALARQFTGYSAATLEPCVRRMRVLHESAENSKLHAIRDRYCKQERHRVALVCCLKESELVF 474
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: UPI0003F0A1E2 (G2/mitotic-specific cyclin-A-like isoform X2 n=3 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A1E2) HSP 1 Score: 209 bits (532), Expect = 5.200e-60 Identity = 117/269 (43.49%), Postives = 167/269 (62.08%), Query Frame = 1 Query: 184 DIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQG-VSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEV 987 D+DA + +S L PDYAK+ YL+E E+RNRP A KQ D+ SMR +LVDW+ EV +++KL + TL+ AV+ IDR LS+ V R KLQL+G A + LA+K+EEIY P E +I+D+TYT+ +++ ME +V+ L F L T F DRF AA+++++ + +L EL LQ+Y+ + S AA+A+ LA TLHP P WT EHYT + ++ PCVR LH+ V + N AVR+KYK LH+V+ + Sbjct: 173 DLDA----KADSQLFVPDYAKDIFSYLKEAEQRNRPKANYMKKQPDITTSMRCILVDWLVEVAEEYKLHNETLYLAVNYIDRFLSSMSVLRSKLQLVGAASMFLAAKFEEIYPPEVGEFVYITDDTYTKKQVLRMEHLVLKVLSFDLAIPTINVFLDRFLRAAEADSKAECMARFLAELTLQEYEPYIRYSQSTIAASAVCLANHTLHPNQQP---WTATLEHYTSFTFQDILPCVRDLHHTFVNSVNNQQQAVREKYKTQKLHQVSLI 434
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: A0A2K1L0Q4_PHYPA (Cyclin N-terminal domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L0Q4_PHYPA) HSP 1 Score: 202 bits (514), Expect = 5.490e-57 Identity = 116/276 (42.03%), Postives = 168/276 (60.87%), Query Frame = 1 Query: 181 KDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLV-----SYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVT 990 +D+D G S+ + YA + ++LR E + RP ++ A QKD+ PSMR +L+DW+ EV +++KL TL+ V IDR LS V R +LQLLG +C+++A+KYEEI AP EE +I+DNTY R E++ ME V++ L+F LT T +F RF AA+++ + +LV +YL EL L +Y + LPS+ AA+A+Y+AR TL P CP W +HYTGY A LE CVR +H L ++ L A+R+KY+ VA +T Sbjct: 196 EDLDTGHSDP----QMCSAYAADIYMHLRMAEVKRRPTTDFMEAMQKDINPSMRGILIDWLVEVAEEYKLVPDTLYLTVAYIDRFLSCNTVTRQRLQLLGVSCMLIAAKYEEICAPRVEEFCYITDNTYQREEVLEMERKVLSQLKFELTTPTTKSFLRRFIRAAQASCKASTLVLEFLGNYLAELTLTEYSMLGFLPSMVAASAVYMARLTLDPSSCP---WDATLQHYTGYKASALEKCVRDIHDLQRNSKNCTLPAIREKYRLHKFKCVATLT 464
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: A0A836CJX2_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX2_9STRA) HSP 1 Score: 195 bits (496), Expect = 7.220e-56 Identity = 115/280 (41.07%), Postives = 166/280 (59.29%), Query Frame = 1 Query: 211 GESHLLNPD----YAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGV-SLLPSLKAAAALYLARQTL--HPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEG 1029 G+ H LN Y + + +L QE + RP Y+ +Q ++ + RS +VDW+ EVC +KL + TLF V+L+DRSL+A R LQ L CAC++LA+K+EE AP++ LA ISDN ++RA ++ E V+ AL+FR++C TP + +C AA +AR+ L Y+LEL L DY V + +PSL+AAAA +LAR T+ AW ++GY A +LE C RR+H LH AE L AVR+K+ + RVA + CA + +L G Sbjct: 16 GDEHDLNVAFLQCYGQHYVAWLYVQELQLRPADYMH-RQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARPGALRVAALCCASDAHLRCALRG 294
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: C3YZV0_BRAFL (Cyclin N-terminal domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YZV0_BRAFL) HSP 1 Score: 193 bits (490), Expect = 3.520e-55 Identity = 115/271 (42.44%), Postives = 161/271 (59.41%), Query Frame = 1 Query: 178 VKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQG-VSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEV 987 ++DIDA G+S L +YA E YLRE E R+RP KQ D+ SMR +LVDW+ EV +++KL + TL+ AV IDR LS+ V R KLQL+G A + LASKYEEIY P E +I+D+TYT+ +++ ME +++ L F + T FQ RF AAK N++ SL YL EL LQ+ + + +PS AAA+L LA+ TL+ + WT HY+GY +L PCV+ +H A + AVR+KY+ H V+ + Sbjct: 50 IEDIDA----RGDSVLEVAEYATEIFQYLREAELRHRPKPGYMKKQPDITNSMRCILVDWLVEVAEEYKLHNETLYLAVSYIDRFLSSMSVLRSKLQLVGTAAMFLASKYEEIYPPDVGEFVYITDDTYTKKQVLRMEHLILKVLSFDVAVPTINCFQKRFLQAAKVNSKTESLAMYLAELTLQEGETFLKYVPSTIAAASLCLAQHTLN-----MQPWTPTLMHYSGYTLADLLPCVQDMHRSFQAAPSSQQQAVREKYRSPKYHGVSTI 311
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: G9JVC5_BRAJU (Cyclin A3-1 (Fragment) n=1 Tax=Brassica juncea TaxID=3707 RepID=G9JVC5_BRAJU) HSP 1 Score: 190 bits (482), Expect = 1.190e-54 Identity = 116/265 (43.77%), Postives = 162/265 (61.13%), Query Frame = 1 Query: 256 LYLREQE--KRNRP-VAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAK-----SNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEE 1026 +YLR+ E +++RP + YI Q+D+ P+MR VLVDW+ EV +++KL S TL+ AV IDR LS V R KLQLLG + +++ASKYEEI P E+ +I+DNTYT+ EI+ ME ++ ALQF L T F RF A+ S+ + L SYL EL + DY + LPS+ AA+A+YLAR + P+ P W+ E YT Y AG+L CV +H L++ +G L AVR+KYK+ VA + + E L F E+ Sbjct: 3 VYLRQLEVKEKSRPLIDYIEKVQRDVTPNMRGVLVDWLVEVAEEYKLLSDTLYLAVSYIDRFLSLRTVNRQKLQLLGVSAMLIASKYEEITPPNVEDFCYITDNTYTKQEIVKMEADILLALQFELGNPTTNTFLRRFTRVAQEDFNMSHLQMEFLCSYLSELSMLDYSSLKFLPSVVAASAVYLARFIIRPKQHP---WSVMLEEYTRYKAGDLRECVCMIHDLYLSRKGGALQAVREKYKQHKFKCVATMPVSPELPLTFFED 264
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: A0A817B2C1_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A817B2C1_BRANA) HSP 1 Score: 190 bits (482), Expect = 2.020e-54 Identity = 115/275 (41.82%), Postives = 162/275 (58.91%), Query Frame = 1 Query: 238 YAKEHALYLREQEKR--NRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARE-----RSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVR 1038 Y + YLRE E + RP+ YI Q D+ PSMR VLVDW+ EV +++KL S TL+ V +DR LSA + R +LQL+G + +++ASKYEEI P E+ +I+DNT+TR ++++ME ++ ALQF L C T F RF A+ + E L YL EL L DY V LPSL A++A++LAR + P+ P W + E YT Y A +L+ CV +H L++ GN L AVR+KYK+ VA + + E L F E+ +R Sbjct: 5 YVADICAYLREMEGKLKQRPLHDYIEKVQNDITPSMRGVLVDWLVEVAEEYKLVSDTLYLTVSYVDRFLSAKPIHRQRLQLVGVSAMLIASKYEEISPPKVEDFVYITDNTFTRQDVVSMEADILLALQFELGCPTIKTFLRRFTRVAQEDFNESLLQIEFLCCYLSELSLLDYTCVKFLPSLLASSAVFLARFIIRPKQHP---WNQMLEEYTKYKASDLQQCVGIIHDLYLSRRGNVLEAVRNKYKQHKFKCVATLPVSPELPLAFFEDVTIR 276
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Match: M4FHY1_BRARP (Cyclin N-terminal domain-containing protein n=13 Tax=Brassiceae TaxID=981071 RepID=M4FHY1_BRARP) HSP 1 Score: 192 bits (487), Expect = 3.820e-54 Identity = 120/298 (40.27%), Postives = 171/298 (57.38%), Query Frame = 1 Query: 169 PPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKR--NRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARE-----RSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAAGELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVR 1038 PP D ++G + + P Y + YLRE E + RP+ YI Q D+ PSMR VLVDW+ EV +++KL S TL+ V +DR LSA + R +LQL+G + +++ASKYEEI P E+ +I+DNT+TR ++++ME ++ ALQF L C T F RF A+ + E L YL EL L DY V LPSL A++A++LAR + P+ P W + E YT Y A +L+ CV +H L++ GN L AVR+KYK+ VA + + E L F E+ +R Sbjct: 72 PPPALDFESGSVDP---QMCGP-YVADICAYLREMEGKLKQRPLHDYIEKVQNDITPSMRGVLVDWLVEVAEEYKLVSDTLYLTVSYVDRFLSAKPIHRQRLQLVGVSAMLIASKYEEISPPKVEDFVYITDNTFTRQDVVSMEADILLALQFELGCPTIKTFLRRFTRVAQEDFNESLLQIEFLCCYLSELSLLDYTCVKFLPSLLASSAVFLARFIIRPKQHP---WNQMLEEYTKYKASDLQQCVGIIHDLYLSRRGNVLEAVRNKYKQHKFKCVATMPVSPELPLAFFEDVTIR 362 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1034.275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1034.275.1 >prot_E-siliculosus-1a_F_contig1034.275.1 ID=prot_E-siliculosus-1a_F_contig1034.275.1|Name=mRNA_E-siliculosus-1a_F_contig1034.275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=348bp MRRRRGSGRRRRSKDGSSCSSQPPARPAAAAAQQRVGGARKPHAQQQQQQback to top mRNA from alignment at E-siliculosus-1a_F_contig1034:26305..29482+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1034.275.1 ID=mRNA_E-siliculosus-1a_F_contig1034.275.1|Name=mRNA_E-siliculosus-1a_F_contig1034.275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3178bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1034:26305..29482+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1034:26305..29482+ >mRNA_E-siliculosus-1a_F_contig1034.275.1 ID=mRNA_E-siliculosus-1a_F_contig1034.275.1|Name=mRNA_E-siliculosus-1a_F_contig1034.275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2088bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1034:26305..29482+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |